Gvermi8202.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8202.t1
Unique NameGvermi8202.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length615
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1557347..1559191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3880.AES91543
Preferred nameSOS2
PFAMsNAF,Pkinase
Max annot lvl35493|Streptophyta
KEGG koko:K07198
KEGG Pathwayko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,ko05418,map04068,map04140,map04150,map04151,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410,map05418
GOsGO:0000325,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009628,GO:0009651,GO:0009705,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0031090,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0098588,GO:0098805,GO:0140096,GO:1901564
Evalue3.94e-77
EggNOG OGsKOG0583@1|root,KOG0583@2759|Eukaryota,37I6U@33090|Viridiplantae,3GAMQ@35493|Streptophyta,4JNCD@91835|fabids
EC2.7.11.11
DescriptionCBL-interacting serine threonine-protein kinase
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001,ko03029,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8202Gvermi8202Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1557347..1559191 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8202.t1.stop1Gvermi8202.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1557347..1557349 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8202.t1.CDS1Gvermi8202.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1557347..1559191 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8202.t1.exon1Gvermi8202.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1557347..1559191 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8202.t1.start1Gvermi8202.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1559189..1559191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8202.t1Gvermi8202.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1557347..1559191 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8202.t1 ID=Gvermi8202.t1|Name=Gvermi8202.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=615bp
MGYFRVGKYIVKRKIGEGAFAEVRLAIHEESGEKFAVKIFDKACFPRPDF
ENNIRKEIQIMTYLNHPNIVSVKNVLVTPTKIYIVMELVTGGELYDEIVR
NTRLDETTSRLYFQQIVDAMVYCHRRGVVHRDLKPENLLLDDKGNIKITD
FGMSWMKDELDPKIQSKQLLKTQCGTPKYMAPEIILRAPDGYDGEKIDAW
ECGIVLYALLAGYLPFTGDDDVAVFQAVLRGEVKFPEHFNPMVRDVISKL
LRKDPSKRSSLYDIRTHPWYLIDYKGSALKENQETWMSLSSVQNPSHGSD
LAGSHSAIVATNTNDVTKLAFATQKQLSMRSNRQLATHNTYSQESQRKPV
TNLLGVQNAGASSKSNKTRKSHIGAQLNQKLRDGTLILNKDETGLDVITL
PPKPKGRAKPNLTLVGLSPFENDDTELKEVICHSGENVFSPRGLKEADDT
VESSTPSFKTNFPRPRLAPFSLKSPRQKEADDDETPTSFRDLLKSPFGAM
MRSLRSSRAQERTGSHSEPPETLENNAPSKALGSISFAQSPTSINSPRTP
GQRNTRSYRTKKSFHASNPLSVSQASNEPIEDFRSETQELSEDITSPSPS
SFRKLTALLHKKGR*
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spliced messenger RNA

>Gvermi8202.t1 ID=Gvermi8202.t1|Name=Gvermi8202.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1845bp|location=Sequence derived from alignment at ScGOVlb_24226:1557347..1559191- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTACTTTCGTGTCGGAAAGTACATCGTAAAAAGGAAAATTGGCGA
GGGCGCTTTCGCAGAAGTTCGGCTCGCAATACACGAGGAATCCGGTGAGA
AGTTTGCTGTCAAGATATTCGATAAAGCATGCTTTCCTCGACCTGACTTT
GAGAACAATATTCGGAAAGAAATTCAGATTATGACGTATTTGAACCACCC
GAACATAGTAAGCGTGAAGAATGTGCTTGTGACCCCGACGAAAATATACA
TCGTTATGGAGCTTGTCACCGGAGGAGAATTATATGACGAAATTGTACGC
AACACTCGTCTAGATGAGACAACATCCCGTCTTTATTTCCAACAGATAGT
TGATGCCATGGTGTACTGTCACCGGCGAGGTGTCGTGCACAGAGATCTCA
AACCGGAGAATTTGCTGCTTGATGATAAGGGTAATATTAAGATTACTGAC
TTTGGAATGTCTTGGATGAAAGATGAGCTGGACCCTAAGATTCAATCTAA
GCAGCTGCTGAAAACTCAGTGTGGTACACCGAAATACATGGCTCCTGAGA
TCATTCTTCGAGCCCCCGATGGATATGACGGTGAGAAAATTGATGCGTGG
GAGTGCGGAATCGTTTTGTACGCTTTGCTTGCCGGATATTTGCCTTTCAC
GGGAGACGATGATGTTGCAGTATTCCAAGCTGTGCTGAGAGGTGAAGTTA
AGTTTCCAGAGCATTTCAACCCCATGGTACGCGACGTTATATCAAAGTTG
CTTCGAAAAGATCCCTCCAAGCGCTCCAGTCTTTACGACATTCGTACGCA
TCCATGGTATCTCATAGACTACAAGGGCAGCGCTTTGAAAGAAAACCAAG
AAACATGGATGAGTTTGTCTTCTGTCCAGAACCCGTCTCATGGTAGTGAC
TTGGCTGGTTCTCATTCAGCCATCGTTGCGACGAATACCAATGATGTTAC
AAAACTAGCATTTGCTACTCAGAAGCAATTAAGCATGCGATCAAATCGTC
AGCTAGCAACTCACAATACATATTCCCAGGAATCACAGAGAAAGCCTGTG
ACGAATCTTCTCGGGGTACAGAATGCAGGAGCCTCAAGCAAAAGCAACAA
AACAAGGAAGTCACACATTGGTGCTCAATTGAATCAAAAACTTAGAGACG
GTACTCTGATTCTAAACAAAGATGAAACAGGATTGGATGTGATTACCCTG
CCACCCAAACCGAAGGGTAGAGCGAAACCAAACCTAACATTAGTTGGCCT
TTCTCCGTTTGAAAATGACGACACGGAACTTAAGGAAGTTATATGCCACT
CGGGCGAAAATGTATTCAGTCCTCGGGGGCTAAAAGAAGCTGACGATACT
GTCGAGAGCAGCACACCTTCCTTCAAAACAAACTTCCCACGGCCTAGGCT
AGCTCCTTTCTCACTGAAGTCCCCTCGTCAGAAAGAAGCCGATGACGATG
AAACTCCGACATCGTTTCGGGATCTTCTGAAGAGTCCTTTTGGAGCAATG
ATGCGATCTTTGCGTAGCAGTCGTGCCCAGGAAAGAACTGGATCTCATTC
AGAACCGCCTGAAACTCTCGAAAACAATGCACCTAGCAAAGCGTTAGGCT
CCATCTCTTTTGCGCAGTCTCCGACATCGATCAATTCACCAAGAACACCA
GGCCAACGAAATACACGAAGCTATCGAACAAAAAAATCCTTCCATGCTTC
AAATCCACTGTCTGTATCTCAAGCCTCGAATGAACCAATCGAAGATTTCC
GCTCCGAAACACAGGAACTTTCGGAAGATATTACTTCACCTTCTCCTTCA
AGCTTTCGAAAACTCACTGCTCTTCTGCATAAGAAAGGAAGGTAA
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protein sequence of Gvermi8202.t1

>Gvermi8202.t1 ID=Gvermi8202.t1|Name=Gvermi8202.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=615bp
MGYFRVGKYIVKRKIGEGAFAEVRLAIHEESGEKFAVKIFDKACFPRPDF
ENNIRKEIQIMTYLNHPNIVSVKNVLVTPTKIYIVMELVTGGELYDEIVR
NTRLDETTSRLYFQQIVDAMVYCHRRGVVHRDLKPENLLLDDKGNIKITD
FGMSWMKDELDPKIQSKQLLKTQCGTPKYMAPEIILRAPDGYDGEKIDAW
ECGIVLYALLAGYLPFTGDDDVAVFQAVLRGEVKFPEHFNPMVRDVISKL
LRKDPSKRSSLYDIRTHPWYLIDYKGSALKENQETWMSLSSVQNPSHGSD
LAGSHSAIVATNTNDVTKLAFATQKQLSMRSNRQLATHNTYSQESQRKPV
TNLLGVQNAGASSKSNKTRKSHIGAQLNQKLRDGTLILNKDETGLDVITL
PPKPKGRAKPNLTLVGLSPFENDDTELKEVICHSGENVFSPRGLKEADDT
VESSTPSFKTNFPRPRLAPFSLKSPRQKEADDDETPTSFRDLLKSPFGAM
MRSLRSSRAQERTGSHSEPPETLENNAPSKALGSISFAQSPTSINSPRTP
GQRNTRSYRTKKSFHASNPLSVSQASNEPIEDFRSETQELSEDITSPSPS
SFRKLTALLHKKGR*
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mRNA from alignment at ScGOVlb_24226:1557347..1559191-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8202.t1 ID=Gvermi8202.t1|Name=Gvermi8202.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1845bp|location=Sequence derived from alignment at ScGOVlb_24226:1557347..1559191- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGTACTTTCGTGTCGGAAAGTACATCGTAAAAAGGAAAATTGGCGA
GGGCGCTTTCGCAGAAGTTCGGCTCGCAATACACGAGGAATCCGGTGAGA
AGTTTGCTGTCAAGATATTCGATAAAGCATGCTTTCCTCGACCTGACTTT
GAGAACAATATTCGGAAAGAAATTCAGATTATGACGTATTTGAACCACCC
GAACATAGTAAGCGTGAAGAATGTGCTTGTGACCCCGACGAAAATATACA
TCGTTATGGAGCTTGTCACCGGAGGAGAATTATATGACGAAATTGTACGC
AACACTCGTCTAGATGAGACAACATCCCGTCTTTATTTCCAACAGATAGT
TGATGCCATGGTGTACTGTCACCGGCGAGGTGTCGTGCACAGAGATCTCA
AACCGGAGAATTTGCTGCTTGATGATAAGGGTAATATTAAGATTACTGAC
TTTGGAATGTCTTGGATGAAAGATGAGCTGGACCCTAAGATTCAATCTAA
GCAGCTGCTGAAAACTCAGTGTGGTACACCGAAATACATGGCTCCTGAGA
TCATTCTTCGAGCCCCCGATGGATATGACGGTGAGAAAATTGATGCGTGG
GAGTGCGGAATCGTTTTGTACGCTTTGCTTGCCGGATATTTGCCTTTCAC
GGGAGACGATGATGTTGCAGTATTCCAAGCTGTGCTGAGAGGTGAAGTTA
AGTTTCCAGAGCATTTCAACCCCATGGTACGCGACGTTATATCAAAGTTG
CTTCGAAAAGATCCCTCCAAGCGCTCCAGTCTTTACGACATTCGTACGCA
TCCATGGTATCTCATAGACTACAAGGGCAGCGCTTTGAAAGAAAACCAAG
AAACATGGATGAGTTTGTCTTCTGTCCAGAACCCGTCTCATGGTAGTGAC
TTGGCTGGTTCTCATTCAGCCATCGTTGCGACGAATACCAATGATGTTAC
AAAACTAGCATTTGCTACTCAGAAGCAATTAAGCATGCGATCAAATCGTC
AGCTAGCAACTCACAATACATATTCCCAGGAATCACAGAGAAAGCCTGTG
ACGAATCTTCTCGGGGTACAGAATGCAGGAGCCTCAAGCAAAAGCAACAA
AACAAGGAAGTCACACATTGGTGCTCAATTGAATCAAAAACTTAGAGACG
GTACTCTGATTCTAAACAAAGATGAAACAGGATTGGATGTGATTACCCTG
CCACCCAAACCGAAGGGTAGAGCGAAACCAAACCTAACATTAGTTGGCCT
TTCTCCGTTTGAAAATGACGACACGGAACTTAAGGAAGTTATATGCCACT
CGGGCGAAAATGTATTCAGTCCTCGGGGGCTAAAAGAAGCTGACGATACT
GTCGAGAGCAGCACACCTTCCTTCAAAACAAACTTCCCACGGCCTAGGCT
AGCTCCTTTCTCACTGAAGTCCCCTCGTCAGAAAGAAGCCGATGACGATG
AAACTCCGACATCGTTTCGGGATCTTCTGAAGAGTCCTTTTGGAGCAATG
ATGCGATCTTTGCGTAGCAGTCGTGCCCAGGAAAGAACTGGATCTCATTC
AGAACCGCCTGAAACTCTCGAAAACAATGCACCTAGCAAAGCGTTAGGCT
CCATCTCTTTTGCGCAGTCTCCGACATCGATCAATTCACCAAGAACACCA
GGCCAACGAAATACACGAAGCTATCGAACAAAAAAATCCTTCCATGCTTC
AAATCCACTGTCTGTATCTCAAGCCTCGAATGAACCAATCGAAGATTTCC
GCTCCGAAACACAGGAACTTTCGGAAGATATTACTTCACCTTCTCCTTCA
AGCTTTCGAAAACTCACTGCTCTTCTGCATAAGAAAGGAAGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1557347..1559191-

>Gvermi8202.t1 ID=Gvermi8202.t1|Name=Gvermi8202.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1845bp|location=Sequence derived from alignment at ScGOVlb_24226:1557347..1559191- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGTACTTTCGTGTCGGAAAGTACATCGTAAAAAGGAAAATTGGCGA
GGGCGCTTTCGCAGAAGTTCGGCTCGCAATACACGAGGAATCCGGTGAGA
AGTTTGCTGTCAAGATATTCGATAAAGCATGCTTTCCTCGACCTGACTTT
GAGAACAATATTCGGAAAGAAATTCAGATTATGACGTATTTGAACCACCC
GAACATAGTAAGCGTGAAGAATGTGCTTGTGACCCCGACGAAAATATACA
TCGTTATGGAGCTTGTCACCGGAGGAGAATTATATGACGAAATTGTACGC
AACACTCGTCTAGATGAGACAACATCCCGTCTTTATTTCCAACAGATAGT
TGATGCCATGGTGTACTGTCACCGGCGAGGTGTCGTGCACAGAGATCTCA
AACCGGAGAATTTGCTGCTTGATGATAAGGGTAATATTAAGATTACTGAC
TTTGGAATGTCTTGGATGAAAGATGAGCTGGACCCTAAGATTCAATCTAA
GCAGCTGCTGAAAACTCAGTGTGGTACACCGAAATACATGGCTCCTGAGA
TCATTCTTCGAGCCCCCGATGGATATGACGGTGAGAAAATTGATGCGTGG
GAGTGCGGAATCGTTTTGTACGCTTTGCTTGCCGGATATTTGCCTTTCAC
GGGAGACGATGATGTTGCAGTATTCCAAGCTGTGCTGAGAGGTGAAGTTA
AGTTTCCAGAGCATTTCAACCCCATGGTACGCGACGTTATATCAAAGTTG
CTTCGAAAAGATCCCTCCAAGCGCTCCAGTCTTTACGACATTCGTACGCA
TCCATGGTATCTCATAGACTACAAGGGCAGCGCTTTGAAAGAAAACCAAG
AAACATGGATGAGTTTGTCTTCTGTCCAGAACCCGTCTCATGGTAGTGAC
TTGGCTGGTTCTCATTCAGCCATCGTTGCGACGAATACCAATGATGTTAC
AAAACTAGCATTTGCTACTCAGAAGCAATTAAGCATGCGATCAAATCGTC
AGCTAGCAACTCACAATACATATTCCCAGGAATCACAGAGAAAGCCTGTG
ACGAATCTTCTCGGGGTACAGAATGCAGGAGCCTCAAGCAAAAGCAACAA
AACAAGGAAGTCACACATTGGTGCTCAATTGAATCAAAAACTTAGAGACG
GTACTCTGATTCTAAACAAAGATGAAACAGGATTGGATGTGATTACCCTG
CCACCCAAACCGAAGGGTAGAGCGAAACCAAACCTAACATTAGTTGGCCT
TTCTCCGTTTGAAAATGACGACACGGAACTTAAGGAAGTTATATGCCACT
CGGGCGAAAATGTATTCAGTCCTCGGGGGCTAAAAGAAGCTGACGATACT
GTCGAGAGCAGCACACCTTCCTTCAAAACAAACTTCCCACGGCCTAGGCT
AGCTCCTTTCTCACTGAAGTCCCCTCGTCAGAAAGAAGCCGATGACGATG
AAACTCCGACATCGTTTCGGGATCTTCTGAAGAGTCCTTTTGGAGCAATG
ATGCGATCTTTGCGTAGCAGTCGTGCCCAGGAAAGAACTGGATCTCATTC
AGAACCGCCTGAAACTCTCGAAAACAATGCACCTAGCAAAGCGTTAGGCT
CCATCTCTTTTGCGCAGTCTCCGACATCGATCAATTCACCAAGAACACCA
GGCCAACGAAATACACGAAGCTATCGAACAAAAAAATCCTTCCATGCTTC
AAATCCACTGTCTGTATCTCAAGCCTCGAATGAACCAATCGAAGATTTCC
GCTCCGAAACACAGGAACTTTCGGAAGATATTACTTCACCTTCTCCTTCA
AGCTTTCGAAAACTCACTGCTCTTCTGCATAAGAAAGGAAGGTAA
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