Gvermi7979.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7979.t1
Unique NameGvermi7979.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length377
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:471657..472787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7979Gvermi7979Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 471657..472787 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7979.t1.start1Gvermi7979.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 471657..471659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7979.t1.CDS1Gvermi7979.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 471657..472787 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7979.t1.exon1Gvermi7979.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 471657..472787 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7979.t1.stop1Gvermi7979.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 472785..472787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7979.t1Gvermi7979.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 471657..472787 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7979.t1 ID=Gvermi7979.t1|Name=Gvermi7979.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=377bp
LPTLPSQPSSRSFSTLHPFISSLYDAFSKRDASCLQQHLHPDVQWDTALF
QVSSVDRVLDALDDFLSFAVDPTIAVYQAHHNASDRVLTLAYTLSFDYPL
PWRPRVSVSADTTVSFSPDAAAKALRIVDGWYAAPLTLIVQALPRPTDIF
WLYPSPHAETDRGQRKVLRTVGRFALVRQAPRHEYRIEAPLGSFEHELAW
AMPALPPHAFEGALKSTETYAAVSPVALRLAAGARALADGSLLFEWAVPV
PTALTGSGGAAPPQAPRAARARLTAVPARVLAVARFGGYSTQTEVRKRLG
ALLGALRERALVPDDDEPSLQFGGRNVWVRSYDCKIGFNSKGVLSIAMHG
GSQGIRRVNEIALDVTDFVSEEQLRG*
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spliced messenger RNA

>Gvermi7979.t1 ID=Gvermi7979.t1|Name=Gvermi7979.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at ScGOVlb_24226:471657..472787+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCCCACGCTGCCCTCGCAGCCCTCCTCCCGCTCGTTTAGCACGTTGCA
CCCATTCATTTCTTCGCTGTACGACGCGTTTTCGAAGCGCGATGCGTCCT
GCCTCCAACAACACCTGCACCCGGATGTGCAGTGGGACACCGCTCTGTTT
CAAGTCTCTTCCGTCGATCGCGTGTTGGACGCCCTGGACGACTTTCTGTC
CTTCGCCGTCGACCCGACCATCGCTGTGTACCAGGCGCACCACAACGCGT
CCGACCGCGTGCTCACGCTCGCCTACACGCTGTCCTTCGACTACCCCCTG
CCGTGGCGCCCTCGCGTGTCCGTGTCCGCGGACACCACCGTGAGCTTCTC
CCCAGACGCCGCCGCAAAAGCGCTTCGAATCGTGGACGGCTGGTACGCGG
CGCCGCTCACGCTCATCGTGCAGGCGCTGCCGCGGCCCACCGACATCTTT
TGGCTGTACCCGTCGCCGCACGCCGAGACGGACCGCGGCCAGCGCAAGGT
GCTGCGCACCGTGGGCCGCTTCGCGCTGGTGCGCCAGGCGCCGCGGCACG
AGTACCGCATCGAGGCGCCGCTGGGCAGCTTCGAGCACGAGCTGGCGTGG
GCCATGCCGGCGCTGCCGCCGCACGCGTTCGAGGGCGCGCTCAAGAGCAC
GGAGACGTACGCGGCCGTGAGCCCCGTGGCGCTGCGGCTGGCGGCCGGCG
CGCGCGCGCTGGCGGACGGCTCGCTGCTCTTCGAGTGGGCCGTGCCCGTG
CCGACGGCGCTGACGGGCAGCGGCGGCGCGGCGCCGCCGCAGGCGCCGCG
CGCGGCGCGCGCGCGGTTGACGGCCGTGCCGGCGCGCGTGCTGGCCGTCG
CGCGCTTCGGCGGCTACAGCACGCAGACGGAGGTGCGCAAGCGGCTGGGC
GCGCTGCTGGGCGCGCTGCGCGAGCGCGCGCTGGTGCCCGACGACGACGA
GCCGTCGCTGCAGTTCGGCGGGCGCAACGTGTGGGTGCGCAGCTACGATT
GTAAAATCGGCTTCAATAGCAAGGGCGTGCTCAGCATCGCCATGCACGGC
GGCAGTCAGGGCATTCGTCGCGTCAACGAAATCGCCCTGGACGTGACGGA
TTTTGTGTCCGAGGAACAGCTCCGCGGCTGA
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protein sequence of Gvermi7979.t1

>Gvermi7979.t1 ID=Gvermi7979.t1|Name=Gvermi7979.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=377bp
LPTLPSQPSSRSFSTLHPFISSLYDAFSKRDASCLQQHLHPDVQWDTALF
QVSSVDRVLDALDDFLSFAVDPTIAVYQAHHNASDRVLTLAYTLSFDYPL
PWRPRVSVSADTTVSFSPDAAAKALRIVDGWYAAPLTLIVQALPRPTDIF
WLYPSPHAETDRGQRKVLRTVGRFALVRQAPRHEYRIEAPLGSFEHELAW
AMPALPPHAFEGALKSTETYAAVSPVALRLAAGARALADGSLLFEWAVPV
PTALTGSGGAAPPQAPRAARARLTAVPARVLAVARFGGYSTQTEVRKRLG
ALLGALRERALVPDDDEPSLQFGGRNVWVRSYDCKIGFNSKGVLSIAMHG
GSQGIRRVNEIALDVTDFVSEEQLRG*
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mRNA from alignment at ScGOVlb_24226:471657..472787+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7979.t1 ID=Gvermi7979.t1|Name=Gvermi7979.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at ScGOVlb_24226:471657..472787+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCCCACGCTGCCCTCGCAGCCCTCCTCCCGCTCGTTTAGCACGTTGCA
CCCATTCATTTCTTCGCTGTACGACGCGTTTTCGAAGCGCGATGCGTCCT
GCCTCCAACAACACCTGCACCCGGATGTGCAGTGGGACACCGCTCTGTTT
CAAGTCTCTTCCGTCGATCGCGTGTTGGACGCCCTGGACGACTTTCTGTC
CTTCGCCGTCGACCCGACCATCGCTGTGTACCAGGCGCACCACAACGCGT
CCGACCGCGTGCTCACGCTCGCCTACACGCTGTCCTTCGACTACCCCCTG
CCGTGGCGCCCTCGCGTGTCCGTGTCCGCGGACACCACCGTGAGCTTCTC
CCCAGACGCCGCCGCAAAAGCGCTTCGAATCGTGGACGGCTGGTACGCGG
CGCCGCTCACGCTCATCGTGCAGGCGCTGCCGCGGCCCACCGACATCTTT
TGGCTGTACCCGTCGCCGCACGCCGAGACGGACCGCGGCCAGCGCAAGGT
GCTGCGCACCGTGGGCCGCTTCGCGCTGGTGCGCCAGGCGCCGCGGCACG
AGTACCGCATCGAGGCGCCGCTGGGCAGCTTCGAGCACGAGCTGGCGTGG
GCCATGCCGGCGCTGCCGCCGCACGCGTTCGAGGGCGCGCTCAAGAGCAC
GGAGACGTACGCGGCCGTGAGCCCCGTGGCGCTGCGGCTGGCGGCCGGCG
CGCGCGCGCTGGCGGACGGCTCGCTGCTCTTCGAGTGGGCCGTGCCCGTG
CCGACGGCGCTGACGGGCAGCGGCGGCGCGGCGCCGCCGCAGGCGCCGCG
CGCGGCGCGCGCGCGGTTGACGGCCGTGCCGGCGCGCGTGCTGGCCGTCG
CGCGCTTCGGCGGCTACAGCACGCAGACGGAGGTGCGCAAGCGGCTGGGC
GCGCTGCTGGGCGCGCTGCGCGAGCGCGCGCTGGTGCCCGACGACGACGA
GCCGTCGCTGCAGTTCGGCGGGCGCAACGTGTGGGTGCGCAGCTACGATT
GTAAAATCGGCTTCAATAGCAAGGGCGTGCTCAGCATCGCCATGCACGGC
GGCAGTCAGGGCATTCGTCGCGTCAACGAAATCGCCCTGGACGTGACGGA
TTTTGTGTCCGAGGAACAGCTCCGCGGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:471657..472787+

>Gvermi7979.t1 ID=Gvermi7979.t1|Name=Gvermi7979.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1131bp|location=Sequence derived from alignment at ScGOVlb_24226:471657..472787+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCCCACGCTGCCCTCGCAGCCCTCCTCCCGCTCGTTTAGCACGTTGCA
CCCATTCATTTCTTCGCTGTACGACGCGTTTTCGAAGCGCGATGCGTCCT
GCCTCCAACAACACCTGCACCCGGATGTGCAGTGGGACACCGCTCTGTTT
CAAGTCTCTTCCGTCGATCGCGTGTTGGACGCCCTGGACGACTTTCTGTC
CTTCGCCGTCGACCCGACCATCGCTGTGTACCAGGCGCACCACAACGCGT
CCGACCGCGTGCTCACGCTCGCCTACACGCTGTCCTTCGACTACCCCCTG
CCGTGGCGCCCTCGCGTGTCCGTGTCCGCGGACACCACCGTGAGCTTCTC
CCCAGACGCCGCCGCAAAAGCGCTTCGAATCGTGGACGGCTGGTACGCGG
CGCCGCTCACGCTCATCGTGCAGGCGCTGCCGCGGCCCACCGACATCTTT
TGGCTGTACCCGTCGCCGCACGCCGAGACGGACCGCGGCCAGCGCAAGGT
GCTGCGCACCGTGGGCCGCTTCGCGCTGGTGCGCCAGGCGCCGCGGCACG
AGTACCGCATCGAGGCGCCGCTGGGCAGCTTCGAGCACGAGCTGGCGTGG
GCCATGCCGGCGCTGCCGCCGCACGCGTTCGAGGGCGCGCTCAAGAGCAC
GGAGACGTACGCGGCCGTGAGCCCCGTGGCGCTGCGGCTGGCGGCCGGCG
CGCGCGCGCTGGCGGACGGCTCGCTGCTCTTCGAGTGGGCCGTGCCCGTG
CCGACGGCGCTGACGGGCAGCGGCGGCGCGGCGCCGCCGCAGGCGCCGCG
CGCGGCGCGCGCGCGGTTGACGGCCGTGCCGGCGCGCGTGCTGGCCGTCG
CGCGCTTCGGCGGCTACAGCACGCAGACGGAGGTGCGCAAGCGGCTGGGC
GCGCTGCTGGGCGCGCTGCGCGAGCGCGCGCTGGTGCCCGACGACGACGA
GCCGTCGCTGCAGTTCGGCGGGCGCAACGTGTGGGTGCGCAGCTACGATT
GTAAAATCGGCTTCAATAGCAAGGGCGTGCTCAGCATCGCCATGCACGGC
GGCAGTCAGGGCATTCGTCGCGTCAACGAAATCGCCCTGGACGTGACGGA
TTTTGTGTCCGAGGAACAGCTCCGCGGCTGA
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