Gvermi7986.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7986.t1
Unique Name	Gvermi7986.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	353

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:485640..486698 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005646537.1
PFAMs	Dus
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K05539
Evalue	2.92e-103
EggNOG OGs	COG0042@1\|root,KOG2335@2759\|Eukaryota,37PYT@33090\|Viridiplantae,34HKE@3041\|Chlorophyta
Description	Dihydrouridine synthase (Dus)
COG category	J
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7986	Gvermi7986	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 485640..486698 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7986.t1.start1	Gvermi7986.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 485640..485642 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7986.t1.CDS1	Gvermi7986.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 485640..486698 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7986.t1.exon1	Gvermi7986.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 485640..486698 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7986.t1.stop1	Gvermi7986.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 486696..486698 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7986.t1	Gvermi7986.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 485640..486698 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:485640..486698+
coding sequence from alignment at ScGOVlb_24226:485640..486698+

mRNA sequence

>Gvermi7986.t1 ID=Gvermi7986.t1|Name=Gvermi7986.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=353bp
MMDVTDRHFRALARLISRHATLYTEMVVDRTLIHNAALRRFALRVPDWPA
QHPLALQLGGSHPDHLRAAAALAAAFPYDELNLNCGCPSPKVAGNGCFGA
ALMRHPHLVADACRSIAAALPPHVRLTVKCRIGVDDLDSYEHLCHFVRVV
SQHGGVSHFIVHARKAILGGLSPHQNRTVPPLMYHYVYRLLRHFPHLRFT
INGGLHTVHHVKEQLARGVHGVMVGRAVMNRPWHALCDVDHVIYNCTCPS
DAQSPRTRRTVIRNYVHYAQLEMAASNCSPRALLRPLLNLFHGEKNGKRF
RRVIDEGLSESLSLERIVERACSVLPDDVLDALPPSLRQSPEPADAVSHA
PA*

spliced messenger RNA

>Gvermi7986.t1 ID=Gvermi7986.t1|Name=Gvermi7986.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at ScGOVlb_24226:485640..486698+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGACGTGACGGACCGCCACTTCCGCGCGCTGGCGCGCCTCATCTC
GCGCCACGCCACGCTCTACACCGAGATGGTCGTCGACCGCACGCTCATCC
ACAACGCCGCGCTGCGCCGCTTCGCGCTGCGCGTGCCCGACTGGCCCGCG
CAGCACCCGCTGGCGCTGCAGCTCGGCGGCTCGCACCCCGACCACCTGCG
CGCCGCCGCCGCCCTCGCCGCCGCCTTCCCCTACGACGAGCTCAACCTCA
ACTGCGGCTGCCCGTCGCCCAAGGTGGCCGGCAACGGCTGCTTCGGCGCC
GCGCTCATGCGCCACCCGCACCTCGTCGCCGACGCCTGCCGCAGCATCGC
CGCCGCCCTCCCGCCGCACGTGCGCCTCACCGTCAAGTGCCGCATCGGCG
TCGACGACCTCGACTCGTACGAGCACCTGTGCCACTTTGTGCGCGTCGTG
TCGCAACACGGCGGCGTGTCGCACTTCATCGTGCACGCCAGAAAGGCCAT
TCTGGGCGGCCTATCGCCGCACCAGAACCGCACCGTGCCGCCGCTCATGT
ACCACTACGTGTACCGCCTGCTGCGCCACTTCCCGCACCTGCGCTTCACC
ATCAACGGCGGCCTGCATACCGTGCACCACGTCAAGGAGCAGCTGGCGCG
CGGCGTGCACGGCGTCATGGTCGGCCGCGCCGTCATGAACCGCCCGTGGC
ACGCGCTCTGCGACGTGGACCACGTCATCTACAACTGCACGTGCCCCTCC
GACGCCCAATCGCCGCGCACGCGCCGCACCGTCATCCGCAACTACGTGCA
CTACGCGCAGCTCGAGATGGCCGCCTCCAACTGCTCGCCGCGCGCCTTGC
TGCGCCCGCTGCTCAACCTGTTCCACGGCGAGAAGAACGGAAAGCGCTTC
CGCCGCGTCATCGACGAGGGGCTCAGCGAATCGCTCAGCCTCGAGCGCAT
CGTTGAGCGCGCCTGCTCGGTGCTGCCGGACGACGTGTTGGATGCGCTGC
CGCCGTCCCTGCGCCAGTCGCCCGAGCCCGCGGACGCGGTGTCGCACGCG
CCTGCGTGA

protein sequence of Gvermi7986.t1

>Gvermi7986.t1 ID=Gvermi7986.t1|Name=Gvermi7986.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=353bp
MMDVTDRHFRALARLISRHATLYTEMVVDRTLIHNAALRRFALRVPDWPA
QHPLALQLGGSHPDHLRAAAALAAAFPYDELNLNCGCPSPKVAGNGCFGA
ALMRHPHLVADACRSIAAALPPHVRLTVKCRIGVDDLDSYEHLCHFVRVV
SQHGGVSHFIVHARKAILGGLSPHQNRTVPPLMYHYVYRLLRHFPHLRFT
INGGLHTVHHVKEQLARGVHGVMVGRAVMNRPWHALCDVDHVIYNCTCPS
DAQSPRTRRTVIRNYVHYAQLEMAASNCSPRALLRPLLNLFHGEKNGKRF
RRVIDEGLSESLSLERIVERACSVLPDDVLDALPPSLRQSPEPADAVSHA
PA*

mRNA from alignment at ScGOVlb_24226:485640..486698+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7986.t1 ID=Gvermi7986.t1|Name=Gvermi7986.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at ScGOVlb_24226:485640..486698+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGACGTGACGGACCGCCACTTCCGCGCGCTGGCGCGCCTCATCTC
GCGCCACGCCACGCTCTACACCGAGATGGTCGTCGACCGCACGCTCATCC
ACAACGCCGCGCTGCGCCGCTTCGCGCTGCGCGTGCCCGACTGGCCCGCG
CAGCACCCGCTGGCGCTGCAGCTCGGCGGCTCGCACCCCGACCACCTGCG
CGCCGCCGCCGCCCTCGCCGCCGCCTTCCCCTACGACGAGCTCAACCTCA
ACTGCGGCTGCCCGTCGCCCAAGGTGGCCGGCAACGGCTGCTTCGGCGCC
GCGCTCATGCGCCACCCGCACCTCGTCGCCGACGCCTGCCGCAGCATCGC
CGCCGCCCTCCCGCCGCACGTGCGCCTCACCGTCAAGTGCCGCATCGGCG
TCGACGACCTCGACTCGTACGAGCACCTGTGCCACTTTGTGCGCGTCGTG
TCGCAACACGGCGGCGTGTCGCACTTCATCGTGCACGCCAGAAAGGCCAT
TCTGGGCGGCCTATCGCCGCACCAGAACCGCACCGTGCCGCCGCTCATGT
ACCACTACGTGTACCGCCTGCTGCGCCACTTCCCGCACCTGCGCTTCACC
ATCAACGGCGGCCTGCATACCGTGCACCACGTCAAGGAGCAGCTGGCGCG
CGGCGTGCACGGCGTCATGGTCGGCCGCGCCGTCATGAACCGCCCGTGGC
ACGCGCTCTGCGACGTGGACCACGTCATCTACAACTGCACGTGCCCCTCC
GACGCCCAATCGCCGCGCACGCGCCGCACCGTCATCCGCAACTACGTGCA
CTACGCGCAGCTCGAGATGGCCGCCTCCAACTGCTCGCCGCGCGCCTTGC
TGCGCCCGCTGCTCAACCTGTTCCACGGCGAGAAGAACGGAAAGCGCTTC
CGCCGCGTCATCGACGAGGGGCTCAGCGAATCGCTCAGCCTCGAGCGCAT
CGTTGAGCGCGCCTGCTCGGTGCTGCCGGACGACGTGTTGGATGCGCTGC
CGCCGTCCCTGCGCCAGTCGCCCGAGCCCGCGGACGCGGTGTCGCACGCG
CCTGCGTGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:485640..486698+

>Gvermi7986.t1 ID=Gvermi7986.t1|Name=Gvermi7986.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1059bp|location=Sequence derived from alignment at ScGOVlb_24226:485640..486698+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGACGTGACGGACCGCCACTTCCGCGCGCTGGCGCGCCTCATCTC
GCGCCACGCCACGCTCTACACCGAGATGGTCGTCGACCGCACGCTCATCC
ACAACGCCGCGCTGCGCCGCTTCGCGCTGCGCGTGCCCGACTGGCCCGCG
CAGCACCCGCTGGCGCTGCAGCTCGGCGGCTCGCACCCCGACCACCTGCG
CGCCGCCGCCGCCCTCGCCGCCGCCTTCCCCTACGACGAGCTCAACCTCA
ACTGCGGCTGCCCGTCGCCCAAGGTGGCCGGCAACGGCTGCTTCGGCGCC
GCGCTCATGCGCCACCCGCACCTCGTCGCCGACGCCTGCCGCAGCATCGC
CGCCGCCCTCCCGCCGCACGTGCGCCTCACCGTCAAGTGCCGCATCGGCG
TCGACGACCTCGACTCGTACGAGCACCTGTGCCACTTTGTGCGCGTCGTG
TCGCAACACGGCGGCGTGTCGCACTTCATCGTGCACGCCAGAAAGGCCAT
TCTGGGCGGCCTATCGCCGCACCAGAACCGCACCGTGCCGCCGCTCATGT
ACCACTACGTGTACCGCCTGCTGCGCCACTTCCCGCACCTGCGCTTCACC
ATCAACGGCGGCCTGCATACCGTGCACCACGTCAAGGAGCAGCTGGCGCG
CGGCGTGCACGGCGTCATGGTCGGCCGCGCCGTCATGAACCGCCCGTGGC
ACGCGCTCTGCGACGTGGACCACGTCATCTACAACTGCACGTGCCCCTCC
GACGCCCAATCGCCGCGCACGCGCCGCACCGTCATCCGCAACTACGTGCA
CTACGCGCAGCTCGAGATGGCCGCCTCCAACTGCTCGCCGCGCGCCTTGC
TGCGCCCGCTGCTCAACCTGTTCCACGGCGAGAAGAACGGAAAGCGCTTC
CGCCGCGTCATCGACGAGGGGCTCAGCGAATCGCTCAGCCTCGAGCGCAT
CGTTGAGCGCGCCTGCTCGGTGCTGCCGGACGACGTGTTGGATGCGCTGC
CGCCGTCCCTGCGCCAGTCGCCCGAGCCCGCGGACGCGGTGTCGCACGCG
CCTGCGTGA