Gvermi7962.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7962.t1
Unique Name	Gvermi7962.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	556

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:326303..327970 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1385935.N836_07840
PFAMs	FIST,FIST_C
Max annot lvl	1117\|Cyanobacteria
Evalue	1.62e-27
EggNOG OGs	COG4398@1\|root,COG4398@2\|Bacteria,1G0TB@1117\|Cyanobacteria,1H74Y@1150\|Oscillatoriales
Description	PFAM FIST C domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7962	Gvermi7962	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 326303..327970 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7962.t1.start1	Gvermi7962.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 326303..326305 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7962.t1.CDS1	Gvermi7962.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 326303..327970 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7962.t1.exon1	Gvermi7962.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 326303..327970 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7962.t1.stop1	Gvermi7962.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 327968..327970 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7962.t1	Gvermi7962.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 326303..327970 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:326303..327970+
coding sequence from alignment at ScGOVlb_24226:326303..327970+

mRNA sequence

>Gvermi7962.t1 ID=Gvermi7962.t1|Name=Gvermi7962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=556bp
LHIESVASKAPALKRIFSHQHEIPMQHSRFQALPKATFCAPVTIKLVRVQ
TSSGNTSLLHRPSAFHHAKRSKRTRCDNWVAPVSCAKIDDSSSVKAPAAS
FSWSVGHSSRKEPLDALQEALSKAGNTLTALRQTVSVAFIFINSSFESSR
GANMSRVIQTAKKTLAMRRLITPQTKIFGSTSAQYIESDEEASASVALVH
FSEATVIKTFCIDDQNDFDIGWKQDQWHELVGVSPSPDRHLHIFMLQHPD
YERMEELLSGLDFSYPGVQKFGASAGKTNALHEGYLFHTNGVTSKQGVIG
LALSSPDVQMNVMVAQGARGVGPLLEVLEVKDGNEITRAREVNTPGAAVA
APMILLDMWANTDSISYDDRMRAKEYLLLGVEVSNIADLATSSISSSNDK
QKAPETQKPVEMVIRKVIGFNEVTKSLMVEGHVALGSRVRFQIRDDEAAR
AELTSLFNKMSLEASSKAMEGMSLMGGLMLVDTERGTHLFGSTMPDADRA
MFVDRFPVPLSIHTSDRQIGPLPAGGLLGTAGNTFILSASALYVTFYGRT
SIGME*

spliced messenger RNA

>Gvermi7962.t1 ID=Gvermi7962.t1|Name=Gvermi7962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at ScGOVlb_24226:326303..327970+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCACATAGAAAGCGTCGCATCGAAGGCACCAGCCTTGAAACGCATCTT
CTCCCACCAGCACGAAATCCCGATGCAGCACAGCCGCTTTCAGGCTCTGC
CGAAGGCAACATTCTGTGCTCCTGTAACCATAAAGTTGGTGAGAGTGCAA
ACCTCCTCAGGAAACACTTCGCTGTTGCACAGGCCATCAGCGTTTCACCA
TGCTAAACGTTCGAAACGAACGCGGTGCGATAATTGGGTTGCGCCAGTAA
GTTGTGCCAAAATAGATGATTCCAGTTCCGTCAAGGCACCCGCTGCATCG
TTTTCTTGGTCTGTAGGGCACTCTAGTCGCAAAGAGCCCCTCGATGCTCT
TCAGGAGGCACTTTCCAAGGCGGGTAACACCCTTACAGCCTTGCGACAAA
CAGTGTCCGTTGCCTTTATTTTCATCAACTCATCATTCGAAAGTAGTCGC
GGTGCAAATATGTCACGCGTTATACAAACGGCTAAGAAAACATTGGCGAT
GAGAAGATTAATAACGCCGCAAACGAAGATTTTCGGGTCCACATCCGCTC
AATACATAGAATCTGATGAAGAGGCGTCTGCCTCAGTGGCATTGGTACAC
TTTTCAGAGGCGACGGTGATCAAAACGTTCTGTATTGATGACCAGAACGA
TTTTGATATCGGGTGGAAGCAGGACCAGTGGCATGAACTAGTAGGCGTTT
CACCGAGTCCCGATCGTCATCTTCACATTTTTATGTTACAACACCCGGAC
TATGAACGAATGGAAGAACTCCTTTCGGGTCTAGATTTCTCGTATCCGGG
AGTCCAAAAGTTTGGGGCTTCAGCAGGGAAGACAAACGCATTACATGAAG
GCTATCTGTTTCACACAAATGGTGTGACGTCGAAACAAGGTGTCATTGGC
CTAGCGCTTTCTAGTCCCGATGTGCAAATGAATGTCATGGTTGCTCAGGG
AGCGCGCGGCGTCGGCCCGCTGCTGGAAGTACTTGAAGTCAAGGACGGCA
ACGAAATCACCCGTGCACGAGAGGTCAACACCCCGGGGGCAGCTGTCGCG
GCCCCAATGATTCTTCTCGATATGTGGGCAAACACAGACAGCATTTCGTA
CGATGATAGAATGCGAGCCAAGGAGTACCTGCTTCTCGGAGTCGAAGTGT
CAAACATCGCTGACTTGGCAACCTCATCGATTTCTAGTTCCAATGACAAA
CAGAAGGCACCTGAAACTCAAAAACCTGTCGAAATGGTGATTCGCAAGGT
GATAGGTTTCAACGAGGTGACCAAATCGCTCATGGTTGAAGGGCATGTCG
CGTTGGGGAGCCGAGTGCGCTTCCAAATTCGCGATGATGAAGCGGCTCGA
GCCGAACTCACGTCATTGTTCAATAAGATGTCTCTGGAAGCGTCCTCGAA
GGCAATGGAAGGCATGTCTTTAATGGGGGGTTTAATGTTGGTAGACACTG
AACGCGGTACCCATCTGTTTGGAAGTACGATGCCTGACGCCGATCGTGCC
ATGTTCGTTGACCGTTTTCCAGTTCCATTGTCTATCCATACGTCGGATCG
TCAGATTGGTCCACTTCCTGCTGGAGGCTTACTAGGTACTGCCGGCAATA
CATTCATCCTGTCTGCATCCGCATTATATGTTACTTTTTATGGTCGCACT
AGCATTGGAATGGAATAG

protein sequence of Gvermi7962.t1

>Gvermi7962.t1 ID=Gvermi7962.t1|Name=Gvermi7962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=556bp
LHIESVASKAPALKRIFSHQHEIPMQHSRFQALPKATFCAPVTIKLVRVQ
TSSGNTSLLHRPSAFHHAKRSKRTRCDNWVAPVSCAKIDDSSSVKAPAAS
FSWSVGHSSRKEPLDALQEALSKAGNTLTALRQTVSVAFIFINSSFESSR
GANMSRVIQTAKKTLAMRRLITPQTKIFGSTSAQYIESDEEASASVALVH
FSEATVIKTFCIDDQNDFDIGWKQDQWHELVGVSPSPDRHLHIFMLQHPD
YERMEELLSGLDFSYPGVQKFGASAGKTNALHEGYLFHTNGVTSKQGVIG
LALSSPDVQMNVMVAQGARGVGPLLEVLEVKDGNEITRAREVNTPGAAVA
APMILLDMWANTDSISYDDRMRAKEYLLLGVEVSNIADLATSSISSSNDK
QKAPETQKPVEMVIRKVIGFNEVTKSLMVEGHVALGSRVRFQIRDDEAAR
AELTSLFNKMSLEASSKAMEGMSLMGGLMLVDTERGTHLFGSTMPDADRA
MFVDRFPVPLSIHTSDRQIGPLPAGGLLGTAGNTFILSASALYVTFYGRT
SIGME*

mRNA from alignment at ScGOVlb_24226:326303..327970+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7962.t1 ID=Gvermi7962.t1|Name=Gvermi7962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at ScGOVlb_24226:326303..327970+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCACATAGAAAGCGTCGCATCGAAGGCACCAGCCTTGAAACGCATCTT
CTCCCACCAGCACGAAATCCCGATGCAGCACAGCCGCTTTCAGGCTCTGC
CGAAGGCAACATTCTGTGCTCCTGTAACCATAAAGTTGGTGAGAGTGCAA
ACCTCCTCAGGAAACACTTCGCTGTTGCACAGGCCATCAGCGTTTCACCA
TGCTAAACGTTCGAAACGAACGCGGTGCGATAATTGGGTTGCGCCAGTAA
GTTGTGCCAAAATAGATGATTCCAGTTCCGTCAAGGCACCCGCTGCATCG
TTTTCTTGGTCTGTAGGGCACTCTAGTCGCAAAGAGCCCCTCGATGCTCT
TCAGGAGGCACTTTCCAAGGCGGGTAACACCCTTACAGCCTTGCGACAAA
CAGTGTCCGTTGCCTTTATTTTCATCAACTCATCATTCGAAAGTAGTCGC
GGTGCAAATATGTCACGCGTTATACAAACGGCTAAGAAAACATTGGCGAT
GAGAAGATTAATAACGCCGCAAACGAAGATTTTCGGGTCCACATCCGCTC
AATACATAGAATCTGATGAAGAGGCGTCTGCCTCAGTGGCATTGGTACAC
TTTTCAGAGGCGACGGTGATCAAAACGTTCTGTATTGATGACCAGAACGA
TTTTGATATCGGGTGGAAGCAGGACCAGTGGCATGAACTAGTAGGCGTTT
CACCGAGTCCCGATCGTCATCTTCACATTTTTATGTTACAACACCCGGAC
TATGAACGAATGGAAGAACTCCTTTCGGGTCTAGATTTCTCGTATCCGGG
AGTCCAAAAGTTTGGGGCTTCAGCAGGGAAGACAAACGCATTACATGAAG
GCTATCTGTTTCACACAAATGGTGTGACGTCGAAACAAGGTGTCATTGGC
CTAGCGCTTTCTAGTCCCGATGTGCAAATGAATGTCATGGTTGCTCAGGG
AGCGCGCGGCGTCGGCCCGCTGCTGGAAGTACTTGAAGTCAAGGACGGCA
ACGAAATCACCCGTGCACGAGAGGTCAACACCCCGGGGGCAGCTGTCGCG
GCCCCAATGATTCTTCTCGATATGTGGGCAAACACAGACAGCATTTCGTA
CGATGATAGAATGCGAGCCAAGGAGTACCTGCTTCTCGGAGTCGAAGTGT
CAAACATCGCTGACTTGGCAACCTCATCGATTTCTAGTTCCAATGACAAA
CAGAAGGCACCTGAAACTCAAAAACCTGTCGAAATGGTGATTCGCAAGGT
GATAGGTTTCAACGAGGTGACCAAATCGCTCATGGTTGAAGGGCATGTCG
CGTTGGGGAGCCGAGTGCGCTTCCAAATTCGCGATGATGAAGCGGCTCGA
GCCGAACTCACGTCATTGTTCAATAAGATGTCTCTGGAAGCGTCCTCGAA
GGCAATGGAAGGCATGTCTTTAATGGGGGGTTTAATGTTGGTAGACACTG
AACGCGGTACCCATCTGTTTGGAAGTACGATGCCTGACGCCGATCGTGCC
ATGTTCGTTGACCGTTTTCCAGTTCCATTGTCTATCCATACGTCGGATCG
TCAGATTGGTCCACTTCCTGCTGGAGGCTTACTAGGTACTGCCGGCAATA
CATTCATCCTGTCTGCATCCGCATTATATGTTACTTTTTATGGTCGCACT
AGCATTGGAATGGAATAG

Coding sequence (CDS) from alignment at ScGOVlb_24226:326303..327970+

>Gvermi7962.t1 ID=Gvermi7962.t1|Name=Gvermi7962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1668bp|location=Sequence derived from alignment at ScGOVlb_24226:326303..327970+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCACATAGAAAGCGTCGCATCGAAGGCACCAGCCTTGAAACGCATCTT
CTCCCACCAGCACGAAATCCCGATGCAGCACAGCCGCTTTCAGGCTCTGC
CGAAGGCAACATTCTGTGCTCCTGTAACCATAAAGTTGGTGAGAGTGCAA
ACCTCCTCAGGAAACACTTCGCTGTTGCACAGGCCATCAGCGTTTCACCA
TGCTAAACGTTCGAAACGAACGCGGTGCGATAATTGGGTTGCGCCAGTAA
GTTGTGCCAAAATAGATGATTCCAGTTCCGTCAAGGCACCCGCTGCATCG
TTTTCTTGGTCTGTAGGGCACTCTAGTCGCAAAGAGCCCCTCGATGCTCT
TCAGGAGGCACTTTCCAAGGCGGGTAACACCCTTACAGCCTTGCGACAAA
CAGTGTCCGTTGCCTTTATTTTCATCAACTCATCATTCGAAAGTAGTCGC
GGTGCAAATATGTCACGCGTTATACAAACGGCTAAGAAAACATTGGCGAT
GAGAAGATTAATAACGCCGCAAACGAAGATTTTCGGGTCCACATCCGCTC
AATACATAGAATCTGATGAAGAGGCGTCTGCCTCAGTGGCATTGGTACAC
TTTTCAGAGGCGACGGTGATCAAAACGTTCTGTATTGATGACCAGAACGA
TTTTGATATCGGGTGGAAGCAGGACCAGTGGCATGAACTAGTAGGCGTTT
CACCGAGTCCCGATCGTCATCTTCACATTTTTATGTTACAACACCCGGAC
TATGAACGAATGGAAGAACTCCTTTCGGGTCTAGATTTCTCGTATCCGGG
AGTCCAAAAGTTTGGGGCTTCAGCAGGGAAGACAAACGCATTACATGAAG
GCTATCTGTTTCACACAAATGGTGTGACGTCGAAACAAGGTGTCATTGGC
CTAGCGCTTTCTAGTCCCGATGTGCAAATGAATGTCATGGTTGCTCAGGG
AGCGCGCGGCGTCGGCCCGCTGCTGGAAGTACTTGAAGTCAAGGACGGCA
ACGAAATCACCCGTGCACGAGAGGTCAACACCCCGGGGGCAGCTGTCGCG
GCCCCAATGATTCTTCTCGATATGTGGGCAAACACAGACAGCATTTCGTA
CGATGATAGAATGCGAGCCAAGGAGTACCTGCTTCTCGGAGTCGAAGTGT
CAAACATCGCTGACTTGGCAACCTCATCGATTTCTAGTTCCAATGACAAA
CAGAAGGCACCTGAAACTCAAAAACCTGTCGAAATGGTGATTCGCAAGGT
GATAGGTTTCAACGAGGTGACCAAATCGCTCATGGTTGAAGGGCATGTCG
CGTTGGGGAGCCGAGTGCGCTTCCAAATTCGCGATGATGAAGCGGCTCGA
GCCGAACTCACGTCATTGTTCAATAAGATGTCTCTGGAAGCGTCCTCGAA
GGCAATGGAAGGCATGTCTTTAATGGGGGGTTTAATGTTGGTAGACACTG
AACGCGGTACCCATCTGTTTGGAAGTACGATGCCTGACGCCGATCGTGCC
ATGTTCGTTGACCGTTTTCCAGTTCCATTGTCTATCCATACGTCGGATCG
TCAGATTGGTCCACTTCCTGCTGGAGGCTTACTAGGTACTGCCGGCAATA
CATTCATCCTGTCTGCATCCGCATTATATGTTACTTTTTATGGTCGCACT
AGCATTGGAATGGAATAG