Gvermi8038.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8038.t1
Unique NameGvermi8038.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length113
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:777520..778190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog272952.HpaP812763
PFAMsRibosomal_L32e
Max annot lvl4776|Peronosporales
KEGG koko:K02912
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Evalue4.84e-39
EggNOG OGsCOG1717@1|root,KOG0878@2759|Eukaryota,3QFFD@4776|Peronosporales
DescriptionRibosomal_L32e
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8038Gvermi8038Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 777520..778190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8038.t1Gvermi8038.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 777520..778190 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8038.t1.start1Gvermi8038.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 777520..777522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8038.t1.CDS1Gvermi8038.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 777520..777541 +
Gvermi8038.t1.CDS2Gvermi8038.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 777770..777796 +
Gvermi8038.t1.CDS3Gvermi8038.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 777901..778190 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8038.t1.exon1Gvermi8038.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 777520..777541 +
Gvermi8038.t1.exon2Gvermi8038.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 777770..777796 +
Gvermi8038.t1.exon3Gvermi8038.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 777901..778190 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8038.t1.intron1Gvermi8038.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 777542..777769 +
Gvermi8038.t1.intron2Gvermi8038.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 777797..777900 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8038.t1.stop1Gvermi8038.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 778188..778190 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8038.t1 ID=Gvermi8038.t1|Name=Gvermi8038.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=113bp
LLDPNSTVLRARAKWQSIDSRVRRKWRGKVSMPNIGYGSNKKTRHMLPNG
FYKFVVHNVNELELLMMQNRVYCAEIASAVSARKRIAILDRAAQLDIKVT
NPTAKVSVEETE*
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spliced messenger RNA

>Gvermi8038.t1 ID=Gvermi8038.t1|Name=Gvermi8038.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=339bp|location=Sequence derived from alignment at ScGOVlb_24226:777520..778190+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCTCGACCCTAATTCAACAGTGCTGCGAGCCCGGGCAAAATGGCAAAG
CATTGATTCCCGTGTTCGTCGCAAGTGGCGTGGAAAGGTTTCCATGCCCA
ACATTGGATACGGCTCAAACAAGAAGACGCGTCACATGCTGCCGAACGGC
TTTTACAAGTTTGTGGTTCACAATGTCAACGAACTGGAGCTTTTAATGAT
GCAAAACCGCGTGTACTGCGCGGAGATTGCGAGCGCCGTTTCTGCTAGGA
AACGTATTGCCATTCTAGATCGTGCGGCCCAGCTTGACATTAAGGTCACT
AATCCTACCGCCAAGGTGAGCGTTGAAGAAACTGAGTAA
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protein sequence of Gvermi8038.t1

>Gvermi8038.t1 ID=Gvermi8038.t1|Name=Gvermi8038.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=113bp
LLDPNSTVLRARAKWQSIDSRVRRKWRGKVSMPNIGYGSNKKTRHMLPNG
FYKFVVHNVNELELLMMQNRVYCAEIASAVSARKRIAILDRAAQLDIKVT
NPTAKVSVEETE*
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mRNA from alignment at ScGOVlb_24226:777520..778190+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8038.t1 ID=Gvermi8038.t1|Name=Gvermi8038.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=671bp|location=Sequence derived from alignment at ScGOVlb_24226:777520..778190+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCTCGACCCTAATTCAACAGGTGAGTTCCCGTTTTCTGCAATGTATTG
CTAGCGCTCGCGCGTTTACTACCGCACCCAGCCACCTTGCACGGGGGCCT
TCTCTGCGTTGACACCGTCATCGGCCACGAGCAGTTTGTGCGCGATTGTG
GCGCTTTTACGTCAAAGACGTTTACGAGACTGCGATCGCCGATACAGGTA
TCAGTAGTGACAATTTGCTAACATTTCGAGTGCCAACTCACGTCTACCAG
TGCTGCGAGCCCGGGCAAAATGGCAAAGTCGCTCAACACGCTCAAGCTTG
TCAAGAAGCGTACGCGCAAGTTCAAGCGCCACCAATCGGACACGAAGATC
CGCGTTCCCGAGTCATGGCGCCGACCGAAAGGCATTGATTCCCGTGTTCG
TCGCAAGTGGCGTGGAAAGGTTTCCATGCCCAACATTGGATACGGCTCAA
ACAAGAAGACGCGTCACATGCTGCCGAACGGCTTTTACAAGTTTGTGGTT
CACAATGTCAACGAACTGGAGCTTTTAATGATGCAAAACCGCGTGTACTG
CGCGGAGATTGCGAGCGCCGTTTCTGCTAGGAAACGTATTGCCATTCTAG
ATCGTGCGGCCCAGCTTGACATTAAGGTCACTAATCCTACCGCCAAGGTG
AGCGTTGAAGAAACTGAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:777520..778190+

>Gvermi8038.t1 ID=Gvermi8038.t1|Name=Gvermi8038.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=339bp|location=Sequence derived from alignment at ScGOVlb_24226:777520..778190+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCTCGACCCTAATTCAACAGTGCTGCGAGCCCGGGCAAAATGGCAAAG
CATTGATTCCCGTGTTCGTCGCAAGTGGCGTGGAAAGGTTTCCATGCCCA
ACATTGGATACGGCTCAAACAAGAAGACGCGTCACATGCTGCCGAACGGC
TTTTACAAGTTTGTGGTTCACAATGTCAACGAACTGGAGCTTTTAATGAT
GCAAAACCGCGTGTACTGCGCGGAGATTGCGAGCGCCGTTTCTGCTAGGA
AACGTATTGCCATTCTAGATCGTGCGGCCCAGCTTGACATTAAGGTCACT
AATCCTACCGCCAAGGTGAGCGTTGAAGAAACTGAGTAA
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