Gvermi8154.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8154.t1
Unique NameGvermi8154.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length399
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1310456..1311652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010695924.1
PFAMsHis_Phos_1
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464
Evalue2.19e-19
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota,37RJN@33090|Viridiplantae,3GDN0@35493|Streptophyta
DescriptionPhosphoglycerate mutase family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8154Gvermi8154Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1310456..1311652 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8154.t1.stop1Gvermi8154.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1310456..1310458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8154.t1.CDS1Gvermi8154.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1310456..1311652 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8154.t1.exon1Gvermi8154.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1310456..1311652 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8154.t1.start1Gvermi8154.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1311650..1311652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8154.t1Gvermi8154.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1310456..1311652 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8154.t1 ID=Gvermi8154.t1|Name=Gvermi8154.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=399bp
MPSFVPSVRFPVRHGDHGKKVLVSSNRPLFPVRHPYRTVRQIPVACTKQP
PGERRSDGTQKRLPNGASRTLFGRVFVEAVSLFVGAFLLLAVLFWRFWQL
ITHYAWHALIWLSNVRQLGKWAVSRMSERVPTRIQSFSKSIRHTFDAMLA
GLRSVENQRKQETSMHVHVSNDATRRSERFTSDAHVDVENVRDVFYRQDV
AVNTGRRLILLRHAKTTWDSDADVPDHDRVLSAKGKEEARIVGSELSRMM
WIPDVILCSDAVRTVQTLSLLEFSGNDRAATTCTESLYYAVTGEEMAVAV
DDALGEQGFIDDTTLMVICHNPGCEELVERLTGRRPVMGTGCAALLEYTE
SEEGSTGQNIQECLRLSANHGQWCLVEMIRPSAVLTAPHQVQSSNGSA*
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spliced messenger RNA

>Gvermi8154.t1 ID=Gvermi8154.t1|Name=Gvermi8154.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at ScGOVlb_24226:1310456..1311652- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCGTTCGTGCCTTCTGTGAGATTTCCGGTTCGCCACGGTGACCA
CGGGAAGAAGGTCCTCGTGTCATCAAACAGACCTCTCTTTCCAGTACGTC
ACCCTTATCGAACGGTGAGACAAATACCCGTGGCCTGCACCAAGCAGCCA
CCAGGTGAACGGCGCTCAGATGGCACCCAAAAACGCCTTCCAAATGGGGC
TTCAAGGACATTGTTTGGTCGCGTCTTCGTAGAGGCTGTATCGTTGTTCG
TGGGTGCATTCCTGCTTCTTGCGGTTCTGTTTTGGCGTTTCTGGCAGCTG
ATTACCCACTATGCGTGGCATGCATTGATATGGCTCTCTAATGTACGTCA
GCTCGGGAAATGGGCTGTTTCTCGTATGAGCGAGAGGGTACCTACCCGTA
TCCAGTCATTCTCCAAGTCCATTCGTCATACGTTTGATGCAATGCTTGCG
GGACTACGAAGCGTGGAAAATCAGCGTAAACAAGAGACATCTATGCATGT
GCACGTGAGCAACGACGCCACTCGGCGCTCAGAGCGCTTTACATCCGACG
CACATGTGGATGTTGAAAATGTTAGGGACGTGTTCTATCGCCAAGATGTT
GCAGTTAATACGGGGCGACGTCTTATACTTTTAAGACATGCAAAGACCAC
CTGGGATAGTGACGCAGACGTTCCGGATCATGATCGGGTTCTCAGCGCCA
AAGGGAAAGAGGAAGCAAGGATAGTTGGGTCTGAATTATCGCGAATGATG
TGGATTCCGGATGTTATCCTATGTTCAGATGCGGTAAGGACTGTACAAAC
GCTAAGCCTGTTGGAATTTTCGGGGAACGACAGAGCTGCGACAACTTGCA
CTGAATCCTTATACTACGCTGTCACTGGCGAAGAAATGGCTGTTGCGGTA
GACGACGCGTTAGGCGAACAGGGATTTATCGATGATACCACGCTCATGGT
CATTTGTCACAATCCAGGGTGCGAAGAACTTGTTGAGCGACTCACGGGTC
GCAGGCCGGTAATGGGAACTGGTTGCGCAGCTTTGTTGGAGTACACGGAA
AGCGAAGAGGGTTCTACTGGTCAAAACATCCAGGAGTGTCTTAGACTTTC
CGCTAATCATGGACAATGGTGCCTCGTTGAAATGATTCGTCCTTCTGCAG
TTTTAACTGCCCCACACCAAGTACAAAGTAGCAATGGAAGTGCGTGA
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protein sequence of Gvermi8154.t1

>Gvermi8154.t1 ID=Gvermi8154.t1|Name=Gvermi8154.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=399bp
MPSFVPSVRFPVRHGDHGKKVLVSSNRPLFPVRHPYRTVRQIPVACTKQP
PGERRSDGTQKRLPNGASRTLFGRVFVEAVSLFVGAFLLLAVLFWRFWQL
ITHYAWHALIWLSNVRQLGKWAVSRMSERVPTRIQSFSKSIRHTFDAMLA
GLRSVENQRKQETSMHVHVSNDATRRSERFTSDAHVDVENVRDVFYRQDV
AVNTGRRLILLRHAKTTWDSDADVPDHDRVLSAKGKEEARIVGSELSRMM
WIPDVILCSDAVRTVQTLSLLEFSGNDRAATTCTESLYYAVTGEEMAVAV
DDALGEQGFIDDTTLMVICHNPGCEELVERLTGRRPVMGTGCAALLEYTE
SEEGSTGQNIQECLRLSANHGQWCLVEMIRPSAVLTAPHQVQSSNGSA*
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mRNA from alignment at ScGOVlb_24226:1310456..1311652-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8154.t1 ID=Gvermi8154.t1|Name=Gvermi8154.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at ScGOVlb_24226:1310456..1311652- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCGTTCGTGCCTTCTGTGAGATTTCCGGTTCGCCACGGTGACCA
CGGGAAGAAGGTCCTCGTGTCATCAAACAGACCTCTCTTTCCAGTACGTC
ACCCTTATCGAACGGTGAGACAAATACCCGTGGCCTGCACCAAGCAGCCA
CCAGGTGAACGGCGCTCAGATGGCACCCAAAAACGCCTTCCAAATGGGGC
TTCAAGGACATTGTTTGGTCGCGTCTTCGTAGAGGCTGTATCGTTGTTCG
TGGGTGCATTCCTGCTTCTTGCGGTTCTGTTTTGGCGTTTCTGGCAGCTG
ATTACCCACTATGCGTGGCATGCATTGATATGGCTCTCTAATGTACGTCA
GCTCGGGAAATGGGCTGTTTCTCGTATGAGCGAGAGGGTACCTACCCGTA
TCCAGTCATTCTCCAAGTCCATTCGTCATACGTTTGATGCAATGCTTGCG
GGACTACGAAGCGTGGAAAATCAGCGTAAACAAGAGACATCTATGCATGT
GCACGTGAGCAACGACGCCACTCGGCGCTCAGAGCGCTTTACATCCGACG
CACATGTGGATGTTGAAAATGTTAGGGACGTGTTCTATCGCCAAGATGTT
GCAGTTAATACGGGGCGACGTCTTATACTTTTAAGACATGCAAAGACCAC
CTGGGATAGTGACGCAGACGTTCCGGATCATGATCGGGTTCTCAGCGCCA
AAGGGAAAGAGGAAGCAAGGATAGTTGGGTCTGAATTATCGCGAATGATG
TGGATTCCGGATGTTATCCTATGTTCAGATGCGGTAAGGACTGTACAAAC
GCTAAGCCTGTTGGAATTTTCGGGGAACGACAGAGCTGCGACAACTTGCA
CTGAATCCTTATACTACGCTGTCACTGGCGAAGAAATGGCTGTTGCGGTA
GACGACGCGTTAGGCGAACAGGGATTTATCGATGATACCACGCTCATGGT
CATTTGTCACAATCCAGGGTGCGAAGAACTTGTTGAGCGACTCACGGGTC
GCAGGCCGGTAATGGGAACTGGTTGCGCAGCTTTGTTGGAGTACACGGAA
AGCGAAGAGGGTTCTACTGGTCAAAACATCCAGGAGTGTCTTAGACTTTC
CGCTAATCATGGACAATGGTGCCTCGTTGAAATGATTCGTCCTTCTGCAG
TTTTAACTGCCCCACACCAAGTACAAAGTAGCAATGGAAGTGCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1310456..1311652-

>Gvermi8154.t1 ID=Gvermi8154.t1|Name=Gvermi8154.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1197bp|location=Sequence derived from alignment at ScGOVlb_24226:1310456..1311652- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCGTTCGTGCCTTCTGTGAGATTTCCGGTTCGCCACGGTGACCA
CGGGAAGAAGGTCCTCGTGTCATCAAACAGACCTCTCTTTCCAGTACGTC
ACCCTTATCGAACGGTGAGACAAATACCCGTGGCCTGCACCAAGCAGCCA
CCAGGTGAACGGCGCTCAGATGGCACCCAAAAACGCCTTCCAAATGGGGC
TTCAAGGACATTGTTTGGTCGCGTCTTCGTAGAGGCTGTATCGTTGTTCG
TGGGTGCATTCCTGCTTCTTGCGGTTCTGTTTTGGCGTTTCTGGCAGCTG
ATTACCCACTATGCGTGGCATGCATTGATATGGCTCTCTAATGTACGTCA
GCTCGGGAAATGGGCTGTTTCTCGTATGAGCGAGAGGGTACCTACCCGTA
TCCAGTCATTCTCCAAGTCCATTCGTCATACGTTTGATGCAATGCTTGCG
GGACTACGAAGCGTGGAAAATCAGCGTAAACAAGAGACATCTATGCATGT
GCACGTGAGCAACGACGCCACTCGGCGCTCAGAGCGCTTTACATCCGACG
CACATGTGGATGTTGAAAATGTTAGGGACGTGTTCTATCGCCAAGATGTT
GCAGTTAATACGGGGCGACGTCTTATACTTTTAAGACATGCAAAGACCAC
CTGGGATAGTGACGCAGACGTTCCGGATCATGATCGGGTTCTCAGCGCCA
AAGGGAAAGAGGAAGCAAGGATAGTTGGGTCTGAATTATCGCGAATGATG
TGGATTCCGGATGTTATCCTATGTTCAGATGCGGTAAGGACTGTACAAAC
GCTAAGCCTGTTGGAATTTTCGGGGAACGACAGAGCTGCGACAACTTGCA
CTGAATCCTTATACTACGCTGTCACTGGCGAAGAAATGGCTGTTGCGGTA
GACGACGCGTTAGGCGAACAGGGATTTATCGATGATACCACGCTCATGGT
CATTTGTCACAATCCAGGGTGCGAAGAACTTGTTGAGCGACTCACGGGTC
GCAGGCCGGTAATGGGAACTGGTTGCGCAGCTTTGTTGGAGTACACGGAA
AGCGAAGAGGGTTCTACTGGTCAAAACATCCAGGAGTGTCTTAGACTTTC
CGCTAATCATGGACAATGGTGCCTCGTTGAAATGATTCGTCCTTCTGCAG
TTTTAACTGCCCCACACCAAGTACAAAGTAGCAATGGAAGTGCGTGA
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