Gvermi7987.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7987.t1
Unique Name	Gvermi7987.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	641

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:488169..490091 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7987	Gvermi7987	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 488169..490091 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7987.t1.start1	Gvermi7987.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 488169..488171 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7987.t1.CDS1	Gvermi7987.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 488169..490091 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7987.t1.exon1	Gvermi7987.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 488169..490091 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7987.t1.stop1	Gvermi7987.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 490089..490091 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7987.t1	Gvermi7987.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 488169..490091 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:488169..490091+
coding sequence from alignment at ScGOVlb_24226:488169..490091+

mRNA sequence

>Gvermi7987.t1 ID=Gvermi7987.t1|Name=Gvermi7987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=641bp
LSDTLIAIPIEKSSQIVSIRRSRGIIGCEAENSDPVEAQHSAPAFTKYES
KRPRKRTAASLQLSETPPPRRATAPSKRGGLRSETFAQRSECGRSSTKNC
NSSARNVSFNSRTKRNAAVSALLNIDSASKTKRLSEVKAGNRRSSNQEGA
LEAGLKLPTAATYDSTEQTSTIAQRTRRSTRLRDLRSVQHSKQTHEKATK
EDAHQYNALEVASKRASKSRKSSNQNQLSEREESAHDQKPSRQPLAKRKR
GRLSRSEKIPAVSSPKSRSGTDQEAKEYRSRTRRSTRLKVLAAADVQIES
TKIKKHDIVDKSRKKDLNYGNNISSKPAGRRECEEDSRTESKPIRTPTVR
FAGTDAPVLRPRKRVSFDPQTLTDNTSSVLGVILTETWSAKQREDFERQR
NRVPANDPRYWELIAVGVEGKSAAQCLELWESSWSSPPGMKSKKVGFTDS
GNEPLKKKAKISTPQVIRNVQKASKSKRGRNTAKYRASVRRLADTFARET
EDDALEPEIVTPKMSCKLTSTRFDMPGLHDGTPGTEVRQKRRNADKGGEL
ATPEILKRGKSFGLKEADQYVSLFRQRLGTGAIVPNSKQVKPSVQRNSAK
GAPRSIAQACKAEDYGDGTSLSDADGSQDSDSSCDADLFF*

spliced messenger RNA

>Gvermi7987.t1 ID=Gvermi7987.t1|Name=Gvermi7987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1923bp|location=Sequence derived from alignment at ScGOVlb_24226:488169..490091+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGAGCGATACGCTCATTGCAATCCCCATCGAGAAGTCGTCTCAAATCGT
CAGCATCCGACGAAGCAGGGGCATAATCGGCTGCGAAGCGGAGAACTCCG
ACCCCGTGGAAGCGCAACACTCCGCACCCGCTTTCACCAAATATGAGAGC
AAAAGGCCACGAAAACGGACTGCCGCGAGTTTGCAGCTGTCGGAAACGCC
GCCACCGCGAAGAGCGACAGCGCCGTCCAAGCGCGGGGGGCTTCGTTCGG
AAACTTTTGCGCAACGCAGCGAATGTGGTCGGTCTTCCACCAAGAACTGC
AACTCTTCTGCTCGCAACGTCTCATTCAATTCGAGAACAAAGCGAAACGC
CGCTGTCTCTGCGCTTCTGAACATCGATTCTGCGTCGAAAACAAAACGCT
TATCGGAAGTTAAAGCTGGAAATCGGCGCTCAAGCAACCAGGAGGGTGCC
CTTGAAGCGGGTCTCAAGCTTCCAACCGCCGCAACATATGATTCAACTGA
GCAAACGTCGACAATTGCGCAACGAACGCGAAGATCAACGAGACTTCGTG
ATCTGAGATCCGTACAGCACTCCAAGCAAACACATGAAAAGGCAACAAAG
GAAGATGCGCACCAATACAATGCGCTAGAGGTAGCTTCTAAAAGGGCTTC
AAAGAGTCGAAAGAGCTCAAATCAGAATCAACTTTCAGAAAGAGAGGAGA
GCGCACATGACCAGAAGCCATCAAGACAGCCGCTTGCAAAGAGGAAAAGA
GGTCGTTTATCAAGATCCGAGAAAATTCCCGCAGTTTCATCCCCCAAAAG
TCGCTCCGGGACAGATCAGGAGGCGAAAGAATATCGCAGTAGAACGAGAC
GCTCGACCCGCTTGAAAGTCCTAGCGGCTGCTGATGTGCAAATCGAATCA
ACAAAAATAAAGAAGCATGACATTGTTGACAAGTCGCGGAAGAAAGATTT
GAATTATGGGAACAATATATCATCAAAGCCGGCTGGGAGACGGGAATGCG
AAGAAGATTCTAGAACTGAAAGCAAACCAATCAGGACACCAACTGTTCGA
TTTGCTGGCACAGACGCTCCGGTTTTGAGACCGCGGAAGAGGGTGTCTTT
TGATCCGCAGACATTAACTGATAACACCTCTTCTGTTTTAGGAGTAATCC
TGACGGAAACATGGTCCGCAAAACAACGGGAGGATTTTGAAAGGCAACGA
AACAGGGTTCCAGCAAATGATCCGCGCTACTGGGAATTAATAGCTGTCGG
AGTCGAAGGGAAGAGCGCAGCTCAATGTTTGGAGCTATGGGAGTCATCGT
GGTCTTCCCCGCCGGGTATGAAGAGCAAGAAAGTTGGGTTTACTGATAGC
GGAAATGAACCACTGAAGAAGAAGGCTAAAATATCCACCCCGCAAGTCAT
CCGAAACGTCCAGAAGGCATCAAAATCGAAGCGCGGACGAAACACAGCCA
AGTACAGAGCGTCTGTTCGTCGTCTTGCAGATACTTTTGCGCGTGAAACT
GAGGATGACGCCCTCGAACCTGAAATTGTGACACCTAAAATGTCTTGCAA
GTTGACGAGCACGAGATTCGACATGCCCGGGTTGCACGACGGAACACCCG
GTACTGAGGTTCGTCAAAAGCGCCGAAATGCCGATAAGGGAGGCGAGCTG
GCAACCCCGGAGATCCTAAAGCGTGGCAAATCCTTCGGCTTGAAGGAAGC
AGACCAATACGTTTCTCTGTTTAGACAGCGTCTGGGTACAGGAGCGATAG
TGCCTAATTCAAAACAGGTCAAACCTAGTGTTCAACGTAATTCGGCCAAA
GGAGCCCCTCGAAGCATTGCTCAAGCCTGTAAGGCCGAAGATTATGGAGA
TGGAACATCTCTTTCTGATGCCGACGGTTCTCAAGATAGTGATTCGTCAT
GCGACGCGGATTTATTCTTCTAG

protein sequence of Gvermi7987.t1

>Gvermi7987.t1 ID=Gvermi7987.t1|Name=Gvermi7987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=641bp
LSDTLIAIPIEKSSQIVSIRRSRGIIGCEAENSDPVEAQHSAPAFTKYES
KRPRKRTAASLQLSETPPPRRATAPSKRGGLRSETFAQRSECGRSSTKNC
NSSARNVSFNSRTKRNAAVSALLNIDSASKTKRLSEVKAGNRRSSNQEGA
LEAGLKLPTAATYDSTEQTSTIAQRTRRSTRLRDLRSVQHSKQTHEKATK
EDAHQYNALEVASKRASKSRKSSNQNQLSEREESAHDQKPSRQPLAKRKR
GRLSRSEKIPAVSSPKSRSGTDQEAKEYRSRTRRSTRLKVLAAADVQIES
TKIKKHDIVDKSRKKDLNYGNNISSKPAGRRECEEDSRTESKPIRTPTVR
FAGTDAPVLRPRKRVSFDPQTLTDNTSSVLGVILTETWSAKQREDFERQR
NRVPANDPRYWELIAVGVEGKSAAQCLELWESSWSSPPGMKSKKVGFTDS
GNEPLKKKAKISTPQVIRNVQKASKSKRGRNTAKYRASVRRLADTFARET
EDDALEPEIVTPKMSCKLTSTRFDMPGLHDGTPGTEVRQKRRNADKGGEL
ATPEILKRGKSFGLKEADQYVSLFRQRLGTGAIVPNSKQVKPSVQRNSAK
GAPRSIAQACKAEDYGDGTSLSDADGSQDSDSSCDADLFF*

mRNA from alignment at ScGOVlb_24226:488169..490091+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7987.t1 ID=Gvermi7987.t1|Name=Gvermi7987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1923bp|location=Sequence derived from alignment at ScGOVlb_24226:488169..490091+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGAGCGATACGCTCATTGCAATCCCCATCGAGAAGTCGTCTCAAATCGT
CAGCATCCGACGAAGCAGGGGCATAATCGGCTGCGAAGCGGAGAACTCCG
ACCCCGTGGAAGCGCAACACTCCGCACCCGCTTTCACCAAATATGAGAGC
AAAAGGCCACGAAAACGGACTGCCGCGAGTTTGCAGCTGTCGGAAACGCC
GCCACCGCGAAGAGCGACAGCGCCGTCCAAGCGCGGGGGGCTTCGTTCGG
AAACTTTTGCGCAACGCAGCGAATGTGGTCGGTCTTCCACCAAGAACTGC
AACTCTTCTGCTCGCAACGTCTCATTCAATTCGAGAACAAAGCGAAACGC
CGCTGTCTCTGCGCTTCTGAACATCGATTCTGCGTCGAAAACAAAACGCT
TATCGGAAGTTAAAGCTGGAAATCGGCGCTCAAGCAACCAGGAGGGTGCC
CTTGAAGCGGGTCTCAAGCTTCCAACCGCCGCAACATATGATTCAACTGA
GCAAACGTCGACAATTGCGCAACGAACGCGAAGATCAACGAGACTTCGTG
ATCTGAGATCCGTACAGCACTCCAAGCAAACACATGAAAAGGCAACAAAG
GAAGATGCGCACCAATACAATGCGCTAGAGGTAGCTTCTAAAAGGGCTTC
AAAGAGTCGAAAGAGCTCAAATCAGAATCAACTTTCAGAAAGAGAGGAGA
GCGCACATGACCAGAAGCCATCAAGACAGCCGCTTGCAAAGAGGAAAAGA
GGTCGTTTATCAAGATCCGAGAAAATTCCCGCAGTTTCATCCCCCAAAAG
TCGCTCCGGGACAGATCAGGAGGCGAAAGAATATCGCAGTAGAACGAGAC
GCTCGACCCGCTTGAAAGTCCTAGCGGCTGCTGATGTGCAAATCGAATCA
ACAAAAATAAAGAAGCATGACATTGTTGACAAGTCGCGGAAGAAAGATTT
GAATTATGGGAACAATATATCATCAAAGCCGGCTGGGAGACGGGAATGCG
AAGAAGATTCTAGAACTGAAAGCAAACCAATCAGGACACCAACTGTTCGA
TTTGCTGGCACAGACGCTCCGGTTTTGAGACCGCGGAAGAGGGTGTCTTT
TGATCCGCAGACATTAACTGATAACACCTCTTCTGTTTTAGGAGTAATCC
TGACGGAAACATGGTCCGCAAAACAACGGGAGGATTTTGAAAGGCAACGA
AACAGGGTTCCAGCAAATGATCCGCGCTACTGGGAATTAATAGCTGTCGG
AGTCGAAGGGAAGAGCGCAGCTCAATGTTTGGAGCTATGGGAGTCATCGT
GGTCTTCCCCGCCGGGTATGAAGAGCAAGAAAGTTGGGTTTACTGATAGC
GGAAATGAACCACTGAAGAAGAAGGCTAAAATATCCACCCCGCAAGTCAT
CCGAAACGTCCAGAAGGCATCAAAATCGAAGCGCGGACGAAACACAGCCA
AGTACAGAGCGTCTGTTCGTCGTCTTGCAGATACTTTTGCGCGTGAAACT
GAGGATGACGCCCTCGAACCTGAAATTGTGACACCTAAAATGTCTTGCAA
GTTGACGAGCACGAGATTCGACATGCCCGGGTTGCACGACGGAACACCCG
GTACTGAGGTTCGTCAAAAGCGCCGAAATGCCGATAAGGGAGGCGAGCTG
GCAACCCCGGAGATCCTAAAGCGTGGCAAATCCTTCGGCTTGAAGGAAGC
AGACCAATACGTTTCTCTGTTTAGACAGCGTCTGGGTACAGGAGCGATAG
TGCCTAATTCAAAACAGGTCAAACCTAGTGTTCAACGTAATTCGGCCAAA
GGAGCCCCTCGAAGCATTGCTCAAGCCTGTAAGGCCGAAGATTATGGAGA
TGGAACATCTCTTTCTGATGCCGACGGTTCTCAAGATAGTGATTCGTCAT
GCGACGCGGATTTATTCTTCTAG

Coding sequence (CDS) from alignment at ScGOVlb_24226:488169..490091+

>Gvermi7987.t1 ID=Gvermi7987.t1|Name=Gvermi7987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1923bp|location=Sequence derived from alignment at ScGOVlb_24226:488169..490091+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGAGCGATACGCTCATTGCAATCCCCATCGAGAAGTCGTCTCAAATCGT
CAGCATCCGACGAAGCAGGGGCATAATCGGCTGCGAAGCGGAGAACTCCG
ACCCCGTGGAAGCGCAACACTCCGCACCCGCTTTCACCAAATATGAGAGC
AAAAGGCCACGAAAACGGACTGCCGCGAGTTTGCAGCTGTCGGAAACGCC
GCCACCGCGAAGAGCGACAGCGCCGTCCAAGCGCGGGGGGCTTCGTTCGG
AAACTTTTGCGCAACGCAGCGAATGTGGTCGGTCTTCCACCAAGAACTGC
AACTCTTCTGCTCGCAACGTCTCATTCAATTCGAGAACAAAGCGAAACGC
CGCTGTCTCTGCGCTTCTGAACATCGATTCTGCGTCGAAAACAAAACGCT
TATCGGAAGTTAAAGCTGGAAATCGGCGCTCAAGCAACCAGGAGGGTGCC
CTTGAAGCGGGTCTCAAGCTTCCAACCGCCGCAACATATGATTCAACTGA
GCAAACGTCGACAATTGCGCAACGAACGCGAAGATCAACGAGACTTCGTG
ATCTGAGATCCGTACAGCACTCCAAGCAAACACATGAAAAGGCAACAAAG
GAAGATGCGCACCAATACAATGCGCTAGAGGTAGCTTCTAAAAGGGCTTC
AAAGAGTCGAAAGAGCTCAAATCAGAATCAACTTTCAGAAAGAGAGGAGA
GCGCACATGACCAGAAGCCATCAAGACAGCCGCTTGCAAAGAGGAAAAGA
GGTCGTTTATCAAGATCCGAGAAAATTCCCGCAGTTTCATCCCCCAAAAG
TCGCTCCGGGACAGATCAGGAGGCGAAAGAATATCGCAGTAGAACGAGAC
GCTCGACCCGCTTGAAAGTCCTAGCGGCTGCTGATGTGCAAATCGAATCA
ACAAAAATAAAGAAGCATGACATTGTTGACAAGTCGCGGAAGAAAGATTT
GAATTATGGGAACAATATATCATCAAAGCCGGCTGGGAGACGGGAATGCG
AAGAAGATTCTAGAACTGAAAGCAAACCAATCAGGACACCAACTGTTCGA
TTTGCTGGCACAGACGCTCCGGTTTTGAGACCGCGGAAGAGGGTGTCTTT
TGATCCGCAGACATTAACTGATAACACCTCTTCTGTTTTAGGAGTAATCC
TGACGGAAACATGGTCCGCAAAACAACGGGAGGATTTTGAAAGGCAACGA
AACAGGGTTCCAGCAAATGATCCGCGCTACTGGGAATTAATAGCTGTCGG
AGTCGAAGGGAAGAGCGCAGCTCAATGTTTGGAGCTATGGGAGTCATCGT
GGTCTTCCCCGCCGGGTATGAAGAGCAAGAAAGTTGGGTTTACTGATAGC
GGAAATGAACCACTGAAGAAGAAGGCTAAAATATCCACCCCGCAAGTCAT
CCGAAACGTCCAGAAGGCATCAAAATCGAAGCGCGGACGAAACACAGCCA
AGTACAGAGCGTCTGTTCGTCGTCTTGCAGATACTTTTGCGCGTGAAACT
GAGGATGACGCCCTCGAACCTGAAATTGTGACACCTAAAATGTCTTGCAA
GTTGACGAGCACGAGATTCGACATGCCCGGGTTGCACGACGGAACACCCG
GTACTGAGGTTCGTCAAAAGCGCCGAAATGCCGATAAGGGAGGCGAGCTG
GCAACCCCGGAGATCCTAAAGCGTGGCAAATCCTTCGGCTTGAAGGAAGC
AGACCAATACGTTTCTCTGTTTAGACAGCGTCTGGGTACAGGAGCGATAG
TGCCTAATTCAAAACAGGTCAAACCTAGTGTTCAACGTAATTCGGCCAAA
GGAGCCCCTCGAAGCATTGCTCAAGCCTGTAAGGCCGAAGATTATGGAGA
TGGAACATCTCTTTCTGATGCCGACGGTTCTCAAGATAGTGATTCGTCAT
GCGACGCGGATTTATTCTTCTAG