Gvermi8153.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8153.t1
Unique NameGvermi8153.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1306819..1308321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8153Gvermi8153Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1306819..1308321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8153.t1Gvermi8153.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1306819..1308321 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8153.t1.stop1Gvermi8153.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1306819..1306821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8153.t1.CDS1Gvermi8153.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1306819..1307086 -
Gvermi8153.t1.CDS2Gvermi8153.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1307903..1308321 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8153.t1.exon1Gvermi8153.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1306819..1307086 -
Gvermi8153.t1.exon2Gvermi8153.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1307903..1308321 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8153.t1.intron1Gvermi8153.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 1307087..1307902 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8153.t1.start1Gvermi8153.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1308319..1308321 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8153.t1 ID=Gvermi8153.t1|Name=Gvermi8153.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=229bp
MESANSTASSQVQTFSTAALLLLVGVVDLIWYVRALLATRELSPWITATV
VNMIFGGVFAVGYVFMRNGPAVFCIPSRVFAFLWPLLANFAVLWYMSYVI
IAEKNVVLGVLPYSDGRLDSVVPMRTGGEQKKSQLIRVFAAQDLPCVISN
STSYEQLAAPTNSILEAGGDLMLQMRFLQMTSVGQLRLASSNRLKLRSDR
AKTTGSIDKRNTVRQGFRQTIRDVYRTR*
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spliced messenger RNA

>Gvermi8153.t1 ID=Gvermi8153.t1|Name=Gvermi8153.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=687bp|location=Sequence derived from alignment at ScGOVlb_24226:1306819..1308321- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGCGCCAACTCGACAGCGTCATCCCAGGTGCAGACGTTTTCCAC
AGCAGCTTTGCTGCTGTTGGTGGGAGTAGTGGATTTGATATGGTATGTTC
GCGCTCTACTCGCAACACGCGAGCTTTCCCCGTGGATTACAGCCACCGTG
GTAAACATGATTTTCGGTGGCGTGTTTGCTGTAGGCTACGTCTTCATGCG
AAATGGCCCCGCCGTGTTCTGCATACCAAGCCGTGTGTTTGCGTTCTTGT
GGCCCCTGCTGGCCAACTTTGCGGTGCTGTGGTACATGTCGTACGTGATA
ATCGCTGAAAAGAATGTAGTTCTTGGCGTACTGCCGTACTCTGACGGGCG
GCTGGACTCGGTAGTGCCGATGCGCACAGGCGGCGAGCAAAAGAAGAGCC
AACTGATCCGCGTCTTCGCCGCTCAGGACCTGCCGTGTGTCATTTCCAAC
TCAACGTCATATGAACAACTTGCTGCGCCCACAAACTCCATTCTAGAAGC
TGGCGGCGATCTCATGTTACAGATGCGTTTCTTGCAAATGACTTCCGTCG
GACAGCTTCGTTTGGCCTCTTCGAACAGATTGAAACTGCGCTCTGATCGA
GCCAAGACCACGGGCTCCATCGACAAACGAAACACTGTTAGACAGGGCTT
TCGACAGACCATCCGAGACGTGTACAGAACGCGTTGA
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protein sequence of Gvermi8153.t1

>Gvermi8153.t1 ID=Gvermi8153.t1|Name=Gvermi8153.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=229bp
MESANSTASSQVQTFSTAALLLLVGVVDLIWYVRALLATRELSPWITATV
VNMIFGGVFAVGYVFMRNGPAVFCIPSRVFAFLWPLLANFAVLWYMSYVI
IAEKNVVLGVLPYSDGRLDSVVPMRTGGEQKKSQLIRVFAAQDLPCVISN
STSYEQLAAPTNSILEAGGDLMLQMRFLQMTSVGQLRLASSNRLKLRSDR
AKTTGSIDKRNTVRQGFRQTIRDVYRTR*
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mRNA from alignment at ScGOVlb_24226:1306819..1308321-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8153.t1 ID=Gvermi8153.t1|Name=Gvermi8153.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at ScGOVlb_24226:1306819..1308321- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAAGCGCCAACTCGACAGCGTCATCCCAGGTGCAGACGTTTTCCAC
AGCAGCTTTGCTGCTGTTGGTGGGAGTAGTGGATTTGATATGGTATGTTC
GCGCTCTACTCGCAACACGCGAGCTTTCCCCGTGGATTACAGCCACCGTG
GTAAACATGATTTTCGGTGGCGTGTTTGCTGTAGGCTACGTCTTCATGCG
AAATGGCCCCGCCGTGTTCTGCATACCAAGCCGTGTGTTTGCGTTCTTGT
GGCCCCTGCTGGCCAACTTTGCGGTGCTGTGGTACATGTCGTACGTGATA
ATCGCTGAAAAGAATGTAGTTCTTGGCGTACTGCCGTACTCTGACGGGCG
GCTGGACTCGGTAGTGCCGATGCGCACAGGCGGCGAGCAAAAGAAGAGCC
AACTGATCCGCGTCTTCGCGTGGCTGGCGGTGGTGGTCATGGCCTTTGCG
TGCGTGCGCGCGGCGTGGAAGGAGTCGCTGGTGGCGGGGTGGAAATCCGC
AACGGCGGGCGCATGGGGCAGCTTCGTGTACATCAACTGCTCGGCGGGGG
TTGTGTTCGTGGCGGTGTATATCGTGGCGCGCGAGGGCGCGTGTGTCGGC
AGCGCGCTGTGGGTGGCGGCGCTTCTGCTGCTGGGCAACATGGCGACGTT
TGCGTACGTTGCGGCCGTGGCCTCGCGCGCGCTGGCGACGGAAACGCCGT
TCCCGCATGTGATGCTGAGCATGAGCCGCACGCCGCGCGCCCGTGCCACG
TAGCTCTCAGCCACGGCGCCAAAAAAAGCGCCGCCGCGCTCCGCACGCCT
CGCCCCGTGCCACCCACGATGCGCTCTTGTTTGCTTCGCTGCCCCTCACC
GGGTGCCCGCGCGCGGTGACGCCGCACCCGCCCTTCCTCCCCTTCCCGCC
GTCCCCCTTCCCCCCAACCACGCTCTCTTCCCCGGCTTTGAAGCCTTTTT
GCGCGCCCCCGCCTTGTGCTTTTTCTCTCGTGTGTGGCGCCTGCCATCCC
GCGCACTCCTCCCCGCCATGTCCGCCTCTCAGACTGACTCGTCCACCGTG
GCTATTCCGTGGTTCAACAACATTTGGTTAAATGATTCGACCACCGAGTC
TAGCGCCGCGGCGCCCTGCCGGCGCACGCGTCTGACGTCGCGGTCGGCAT
CAAGCTCGCATCATACCATATCCACCCTGTCAGCCATCGACCACATATCG
CTCTGCAGTGTTCCGTCGTCGGTCCGTCAATGCAGCGCTCAGGACCTGCC
GTGTGTCATTTCCAACTCAACGTCATATGAACAACTTGCTGCGCCCACAA
ACTCCATTCTAGAAGCTGGCGGCGATCTCATGTTACAGATGCGTTTCTTG
CAAATGACTTCCGTCGGACAGCTTCGTTTGGCCTCTTCGAACAGATTGAA
ACTGCGCTCTGATCGAGCCAAGACCACGGGCTCCATCGACAAACGAAACA
CTGTTAGACAGGGCTTTCGACAGACCATCCGAGACGTGTACAGAACGCGT
TGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1306819..1308321-

>Gvermi8153.t1 ID=Gvermi8153.t1|Name=Gvermi8153.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=687bp|location=Sequence derived from alignment at ScGOVlb_24226:1306819..1308321- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAAGCGCCAACTCGACAGCGTCATCCCAGGTGCAGACGTTTTCCAC
AGCAGCTTTGCTGCTGTTGGTGGGAGTAGTGGATTTGATATGGTATGTTC
GCGCTCTACTCGCAACACGCGAGCTTTCCCCGTGGATTACAGCCACCGTG
GTAAACATGATTTTCGGTGGCGTGTTTGCTGTAGGCTACGTCTTCATGCG
AAATGGCCCCGCCGTGTTCTGCATACCAAGCCGTGTGTTTGCGTTCTTGT
GGCCCCTGCTGGCCAACTTTGCGGTGCTGTGGTACATGTCGTACGTGATA
ATCGCTGAAAAGAATGTAGTTCTTGGCGTACTGCCGTACTCTGACGGGCG
GCTGGACTCGGTAGTGCCGATGCGCACAGGCGGCGAGCAAAAGAAGAGCC
AACTGATCCGCGTCTTCGCCGCTCAGGACCTGCCGTGTGTCATTTCCAAC
TCAACGTCATATGAACAACTTGCTGCGCCCACAAACTCCATTCTAGAAGC
TGGCGGCGATCTCATGTTACAGATGCGTTTCTTGCAAATGACTTCCGTCG
GACAGCTTCGTTTGGCCTCTTCGAACAGATTGAAACTGCGCTCTGATCGA
GCCAAGACCACGGGCTCCATCGACAAACGAAACACTGTTAGACAGGGCTT
TCGACAGACCATCCGAGACGTGTACAGAACGCGTTGA
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