Gvermi8094.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8094.t1
Unique NameGvermi8094.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length261
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:986935..987717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_81061
Preferred nameDCAF13
PFAMsSof1,WD40
Max annot lvl2759|Eukaryota
KEGG koko:K11806
GOsGO:0000151,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006464,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0030054,GO:0030331,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031461,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035257,GO:0035258,GO:0036211,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043687,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0051427,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1990234,GO:1990904
Evalue1.24e-56
EggNOG OGsKOG0268@1|root,KOG0268@2759|Eukaryota
Descriptionmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG categoryS
BRITEko00000,ko03009,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8094Gvermi8094Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 986935..987717 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8094.t1.start1Gvermi8094.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 986935..986937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8094.t1.CDS1Gvermi8094.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 986935..987717 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8094.t1.exon1Gvermi8094.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 986935..987717 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8094.t1.stop1Gvermi8094.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 987715..987717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8094.t1Gvermi8094.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 986935..987717 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8094.t1 ID=Gvermi8094.t1|Name=Gvermi8094.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=261bp
LQTLALSADSLHCVRWNPAEPSVLASAGADRAITLYDVRARAPIRRLVLA
MRTNDLSWNPVEPMNFVAANDDHNCYSYDMRRLSARGATAVHVGHTAAVM
AVDFAPTGRQFVSGSYDKTLRIFDHTAGRSRELYHTRRMQRVFAAVFSLD
AAYVVSGSDDADVRVWKSERSRPLKPLFAAERQRLHAARKLVHRYQAIPH
VRRIAKQRHAPAHVRAVTAVKAAIDKSAARKLRNRRAHTKPHLRPNKTQL
RNRNIVRELE*
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spliced messenger RNA

>Gvermi8094.t1 ID=Gvermi8094.t1|Name=Gvermi8094.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=783bp|location=Sequence derived from alignment at ScGOVlb_24226:986935..987717+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCAGACGCTGGCGCTGTCCGCCGACTCGCTGCACTGCGTGCGCTGGAA
CCCGGCCGAGCCCTCCGTGCTGGCGTCGGCCGGCGCCGACCGCGCCATCA
CGCTGTACGACGTGCGCGCGCGCGCGCCCATCCGCCGCCTCGTGCTCGCC
ATGCGCACCAACGACCTGTCGTGGAACCCGGTGGAGCCCATGAACTTTGT
GGCCGCCAACGACGACCACAACTGCTACTCGTACGACATGCGCCGCCTGT
CCGCGCGCGGCGCCACCGCCGTGCACGTCGGCCACACCGCCGCCGTCATG
GCCGTCGACTTTGCGCCCACGGGCCGCCAGTTTGTGTCGGGCAGCTACGA
CAAGACGCTGCGCATCTTCGACCACACGGCCGGCCGCAGCCGCGAGCTGT
ACCACACGCGCCGCATGCAGCGCGTCTTTGCCGCCGTCTTCTCGCTGGAC
GCCGCCTACGTCGTGTCGGGCAGCGACGACGCCGACGTGCGCGTGTGGAA
GAGCGAGCGCAGCCGCCCGCTCAAGCCGCTGTTCGCCGCCGAGCGCCAGC
GCCTGCACGCCGCGCGCAAGCTCGTGCACCGCTACCAGGCCATCCCGCAC
GTGCGCCGCATCGCCAAGCAGCGCCACGCCCCCGCCCACGTGCGCGCCGT
CACCGCCGTCAAGGCCGCCATCGACAAGAGCGCCGCCCGCAAGCTGCGCA
ACCGCCGCGCGCACACCAAGCCGCACCTGCGCCCCAACAAGACGCAGCTG
CGCAACCGCAACATTGTGCGCGAACTCGAGTAG
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protein sequence of Gvermi8094.t1

>Gvermi8094.t1 ID=Gvermi8094.t1|Name=Gvermi8094.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=261bp
LQTLALSADSLHCVRWNPAEPSVLASAGADRAITLYDVRARAPIRRLVLA
MRTNDLSWNPVEPMNFVAANDDHNCYSYDMRRLSARGATAVHVGHTAAVM
AVDFAPTGRQFVSGSYDKTLRIFDHTAGRSRELYHTRRMQRVFAAVFSLD
AAYVVSGSDDADVRVWKSERSRPLKPLFAAERQRLHAARKLVHRYQAIPH
VRRIAKQRHAPAHVRAVTAVKAAIDKSAARKLRNRRAHTKPHLRPNKTQL
RNRNIVRELE*
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mRNA from alignment at ScGOVlb_24226:986935..987717+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8094.t1 ID=Gvermi8094.t1|Name=Gvermi8094.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=783bp|location=Sequence derived from alignment at ScGOVlb_24226:986935..987717+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCAGACGCTGGCGCTGTCCGCCGACTCGCTGCACTGCGTGCGCTGGAA
CCCGGCCGAGCCCTCCGTGCTGGCGTCGGCCGGCGCCGACCGCGCCATCA
CGCTGTACGACGTGCGCGCGCGCGCGCCCATCCGCCGCCTCGTGCTCGCC
ATGCGCACCAACGACCTGTCGTGGAACCCGGTGGAGCCCATGAACTTTGT
GGCCGCCAACGACGACCACAACTGCTACTCGTACGACATGCGCCGCCTGT
CCGCGCGCGGCGCCACCGCCGTGCACGTCGGCCACACCGCCGCCGTCATG
GCCGTCGACTTTGCGCCCACGGGCCGCCAGTTTGTGTCGGGCAGCTACGA
CAAGACGCTGCGCATCTTCGACCACACGGCCGGCCGCAGCCGCGAGCTGT
ACCACACGCGCCGCATGCAGCGCGTCTTTGCCGCCGTCTTCTCGCTGGAC
GCCGCCTACGTCGTGTCGGGCAGCGACGACGCCGACGTGCGCGTGTGGAA
GAGCGAGCGCAGCCGCCCGCTCAAGCCGCTGTTCGCCGCCGAGCGCCAGC
GCCTGCACGCCGCGCGCAAGCTCGTGCACCGCTACCAGGCCATCCCGCAC
GTGCGCCGCATCGCCAAGCAGCGCCACGCCCCCGCCCACGTGCGCGCCGT
CACCGCCGTCAAGGCCGCCATCGACAAGAGCGCCGCCCGCAAGCTGCGCA
ACCGCCGCGCGCACACCAAGCCGCACCTGCGCCCCAACAAGACGCAGCTG
CGCAACCGCAACATTGTGCGCGAACTCGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:986935..987717+

>Gvermi8094.t1 ID=Gvermi8094.t1|Name=Gvermi8094.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=783bp|location=Sequence derived from alignment at ScGOVlb_24226:986935..987717+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCAGACGCTGGCGCTGTCCGCCGACTCGCTGCACTGCGTGCGCTGGAA
CCCGGCCGAGCCCTCCGTGCTGGCGTCGGCCGGCGCCGACCGCGCCATCA
CGCTGTACGACGTGCGCGCGCGCGCGCCCATCCGCCGCCTCGTGCTCGCC
ATGCGCACCAACGACCTGTCGTGGAACCCGGTGGAGCCCATGAACTTTGT
GGCCGCCAACGACGACCACAACTGCTACTCGTACGACATGCGCCGCCTGT
CCGCGCGCGGCGCCACCGCCGTGCACGTCGGCCACACCGCCGCCGTCATG
GCCGTCGACTTTGCGCCCACGGGCCGCCAGTTTGTGTCGGGCAGCTACGA
CAAGACGCTGCGCATCTTCGACCACACGGCCGGCCGCAGCCGCGAGCTGT
ACCACACGCGCCGCATGCAGCGCGTCTTTGCCGCCGTCTTCTCGCTGGAC
GCCGCCTACGTCGTGTCGGGCAGCGACGACGCCGACGTGCGCGTGTGGAA
GAGCGAGCGCAGCCGCCCGCTCAAGCCGCTGTTCGCCGCCGAGCGCCAGC
GCCTGCACGCCGCGCGCAAGCTCGTGCACCGCTACCAGGCCATCCCGCAC
GTGCGCCGCATCGCCAAGCAGCGCCACGCCCCCGCCCACGTGCGCGCCGT
CACCGCCGTCAAGGCCGCCATCGACAAGAGCGCCGCCCGCAAGCTGCGCA
ACCGCCGCGCGCACACCAAGCCGCACCTGCGCCCCAACAAGACGCAGCTG
CGCAACCGCAACATTGTGCGCGAACTCGAGTAG
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