Gvermi8013.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8013.t1
Unique Name	Gvermi8013.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	387

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:665227..666387 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706452.1
PFAMs	zf-RING_2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13148,ko:K19041
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010498,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0022414,GO:0030163,GO:0031090,GO:0032182,GO:0032183,GO:0032184,GO:0032446,GO:0032501,GO:0032502,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051603,GO:0061458,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue	9.15e-75
EggNOG OGs	KOG0800@1\|root,KOG0800@2759\|Eukaryota
EC	2.3.2.27
Description	ubiquitin-protein transferase activity
COG category	O
BRITE	ko00000,ko01000,ko03041,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8013	Gvermi8013	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 665227..666387 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8013.t1.start1	Gvermi8013.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 665227..665229 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8013.t1.CDS1	Gvermi8013.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 665227..666387 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8013.t1.exon1	Gvermi8013.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 665227..666387 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8013.t1.stop1	Gvermi8013.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 666385..666387 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8013.t1	Gvermi8013.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 665227..666387 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:665227..666387+
coding sequence from alignment at ScGOVlb_24226:665227..666387+

mRNA sequence

>Gvermi8013.t1 ID=Gvermi8013.t1|Name=Gvermi8013.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=387bp
MPPSTPRRRSGIFHVESTRLRSNVADQVQRDLLPAGRMLSVFLVLCELLA
EFAVLAWSRGQTCKPPLRFWLLVLIVLQLTTVLLNCLNICQRRAGMDSLR
HHRNGLSSSELDMYADDPAAPPPPPPSVSNDVVVHVMPHHPPSADPDTSP
LLHHDPSYDHPAHTSASPHIATHHPQSPHPPSSPSSSREFAPYHQQPDHA
PYNIVSSQFVDRFIRIVNLWYLAWFIVGSIWVSDGGTCATEAPHLYRLIV
ALTIIYYALLFLPLACFCLIVCCLPLFILVYRIMLPYAERERRRARAADP
AQVQNLNSITFSPETFTAHTGSENLDDASCVICLCDYEDGEVVRFLPCKH
HFHKDCVDVWLRLDKACCLCKQDIDAHNSSPASSPV*

spliced messenger RNA

>Gvermi8013.t1 ID=Gvermi8013.t1|Name=Gvermi8013.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1161bp|location=Sequence derived from alignment at ScGOVlb_24226:665227..666387+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCAGCACGCCGCGCCGCCGCAGCGGCATCTTCCATGTCGAGTC
CACCCGCCTCCGCTCCAACGTCGCCGATCAAGTGCAGCGCGACCTCCTCC
CCGCAGGCCGCATGCTCTCCGTCTTCCTCGTCTTATGCGAATTGCTCGCC
GAGTTTGCCGTCCTGGCCTGGTCGCGCGGCCAAACCTGCAAGCCCCCTCT
TCGCTTTTGGCTTCTGGTCCTCATCGTCCTTCAACTCACCACCGTTCTGC
TCAACTGTCTCAACATCTGCCAGCGAAGGGCCGGCATGGATTCCCTACGC
CACCACAGGAACGGCCTCTCCTCCTCTGAGCTTGACATGTAcgccgacga
ccccgccgccccgccgccgccccctccctccgTCTCAAACGATGTTGTCG
TGCACGTCATGCCGCACCACCCCCCTTCCGCAGATCCTGACACAAGCCCT
CTGCTCCATCATGACCCGTCCTATGATCACCCTGCCCACACTTCGGCCTC
TCCACATATTGCCACCCATCATCCGCAATCCCCCCACCCCCCTTCGTCCC
CGTCCTCCTCCCGTGAGTTCGCCCCCTACCACCAACAGCCCGACCACGCC
CCCTACAACATCGTCTCGTCGCAGTTTGTTGATCGCTTCATACGCATTGT
CAACCTCTGGTACCTCGCTTGGTTTATCGTAGGCTCCATATGGGTTTCGG
ATGGCGGCACGTGCGCCACGGAGGCCCCGCATCTCTACCGACTCATCGTT
GCCCTCACTATAATCTACTACGCCCTTCTCTTCCTCCCTCTGGCCTGTTT
CTGTCTCATCGTTTGCTGTCTCCCCTTGTTCATCCTTGTTTACCGAATCA
TGCTCCCGTACGCCGAGCGCGAAAGACGCCGAGCGCGCGCAGCCGACCCA
GCCCAGGTCCAAAACCTCAATTCCATCACCTTTTCGCCCGAAACCTTCAC
GGCCCACACGGGCAGCGAAAATTTGGACGACGCCAGCTGTGTCATCTGTT
TGTGCGACTACGAGGACGGTGAGGTGGTCAGGTTCCTACCCTGCAAGCAC
CACTTTCACAAGGATTGCGTCGACGTGTGGTTGCGGCTCGACAAGGCGTG
TTGCCTATGCAAACAAGATATTGATGCCCACAATTCATCCCCTGCGTCAT
CTCCGGTTTGA

protein sequence of Gvermi8013.t1

>Gvermi8013.t1 ID=Gvermi8013.t1|Name=Gvermi8013.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=387bp
MPPSTPRRRSGIFHVESTRLRSNVADQVQRDLLPAGRMLSVFLVLCELLA
EFAVLAWSRGQTCKPPLRFWLLVLIVLQLTTVLLNCLNICQRRAGMDSLR
HHRNGLSSSELDMYADDPAAPPPPPPSVSNDVVVHVMPHHPPSADPDTSP
LLHHDPSYDHPAHTSASPHIATHHPQSPHPPSSPSSSREFAPYHQQPDHA
PYNIVSSQFVDRFIRIVNLWYLAWFIVGSIWVSDGGTCATEAPHLYRLIV
ALTIIYYALLFLPLACFCLIVCCLPLFILVYRIMLPYAERERRRARAADP
AQVQNLNSITFSPETFTAHTGSENLDDASCVICLCDYEDGEVVRFLPCKH
HFHKDCVDVWLRLDKACCLCKQDIDAHNSSPASSPV*

mRNA from alignment at ScGOVlb_24226:665227..666387+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8013.t1 ID=Gvermi8013.t1|Name=Gvermi8013.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1161bp|location=Sequence derived from alignment at ScGOVlb_24226:665227..666387+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGCCCAGCACGCCGCGCCGCCGCAGCGGCATCTTCCATGTCGAGTC
CACCCGCCTCCGCTCCAACGTCGCCGATCAAGTGCAGCGCGACCTCCTCC
CCGCAGGCCGCATGCTCTCCGTCTTCCTCGTCTTATGCGAATTGCTCGCC
GAGTTTGCCGTCCTGGCCTGGTCGCGCGGCCAAACCTGCAAGCCCCCTCT
TCGCTTTTGGCTTCTGGTCCTCATCGTCCTTCAACTCACCACCGTTCTGC
TCAACTGTCTCAACATCTGCCAGCGAAGGGCCGGCATGGATTCCCTACGC
CACCACAGGAACGGCCTCTCCTCCTCTGAGCTTGACATGTAcgccgacga
ccccgccgccccgccgccgccccctccctccgTCTCAAACGATGTTGTCG
TGCACGTCATGCCGCACCACCCCCCTTCCGCAGATCCTGACACAAGCCCT
CTGCTCCATCATGACCCGTCCTATGATCACCCTGCCCACACTTCGGCCTC
TCCACATATTGCCACCCATCATCCGCAATCCCCCCACCCCCCTTCGTCCC
CGTCCTCCTCCCGTGAGTTCGCCCCCTACCACCAACAGCCCGACCACGCC
CCCTACAACATCGTCTCGTCGCAGTTTGTTGATCGCTTCATACGCATTGT
CAACCTCTGGTACCTCGCTTGGTTTATCGTAGGCTCCATATGGGTTTCGG
ATGGCGGCACGTGCGCCACGGAGGCCCCGCATCTCTACCGACTCATCGTT
GCCCTCACTATAATCTACTACGCCCTTCTCTTCCTCCCTCTGGCCTGTTT
CTGTCTCATCGTTTGCTGTCTCCCCTTGTTCATCCTTGTTTACCGAATCA
TGCTCCCGTACGCCGAGCGCGAAAGACGCCGAGCGCGCGCAGCCGACCCA
GCCCAGGTCCAAAACCTCAATTCCATCACCTTTTCGCCCGAAACCTTCAC
GGCCCACACGGGCAGCGAAAATTTGGACGACGCCAGCTGTGTCATCTGTT
TGTGCGACTACGAGGACGGTGAGGTGGTCAGGTTCCTACCCTGCAAGCAC
CACTTTCACAAGGATTGCGTCGACGTGTGGTTGCGGCTCGACAAGGCGTG
TTGCCTATGCAAACAAGATATTGATGCCCACAATTCATCCCCTGCGTCAT
CTCCGGTTTGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:665227..666387+

>Gvermi8013.t1 ID=Gvermi8013.t1|Name=Gvermi8013.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1161bp|location=Sequence derived from alignment at ScGOVlb_24226:665227..666387+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGCCCAGCACGCCGCGCCGCCGCAGCGGCATCTTCCATGTCGAGTC
CACCCGCCTCCGCTCCAACGTCGCCGATCAAGTGCAGCGCGACCTCCTCC
CCGCAGGCCGCATGCTCTCCGTCTTCCTCGTCTTATGCGAATTGCTCGCC
GAGTTTGCCGTCCTGGCCTGGTCGCGCGGCCAAACCTGCAAGCCCCCTCT
TCGCTTTTGGCTTCTGGTCCTCATCGTCCTTCAACTCACCACCGTTCTGC
TCAACTGTCTCAACATCTGCCAGCGAAGGGCCGGCATGGATTCCCTACGC
CACCACAGGAACGGCCTCTCCTCCTCTGAGCTTGACATGTAcgccgacga
ccccgccgccccgccgccgccccctccctccgTCTCAAACGATGTTGTCG
TGCACGTCATGCCGCACCACCCCCCTTCCGCAGATCCTGACACAAGCCCT
CTGCTCCATCATGACCCGTCCTATGATCACCCTGCCCACACTTCGGCCTC
TCCACATATTGCCACCCATCATCCGCAATCCCCCCACCCCCCTTCGTCCC
CGTCCTCCTCCCGTGAGTTCGCCCCCTACCACCAACAGCCCGACCACGCC
CCCTACAACATCGTCTCGTCGCAGTTTGTTGATCGCTTCATACGCATTGT
CAACCTCTGGTACCTCGCTTGGTTTATCGTAGGCTCCATATGGGTTTCGG
ATGGCGGCACGTGCGCCACGGAGGCCCCGCATCTCTACCGACTCATCGTT
GCCCTCACTATAATCTACTACGCCCTTCTCTTCCTCCCTCTGGCCTGTTT
CTGTCTCATCGTTTGCTGTCTCCCCTTGTTCATCCTTGTTTACCGAATCA
TGCTCCCGTACGCCGAGCGCGAAAGACGCCGAGCGCGCGCAGCCGACCCA
GCCCAGGTCCAAAACCTCAATTCCATCACCTTTTCGCCCGAAACCTTCAC
GGCCCACACGGGCAGCGAAAATTTGGACGACGCCAGCTGTGTCATCTGTT
TGTGCGACTACGAGGACGGTGAGGTGGTCAGGTTCCTACCCTGCAAGCAC
CACTTTCACAAGGATTGCGTCGACGTGTGGTTGCGGCTCGACAAGGCGTG
TTGCCTATGCAAACAAGATATTGATGCCCACAATTCATCCCCTGCGTCAT
CTCCGGTTTGA