Gvermi8005.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8005.t2
Unique NameGvermi8005.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length562
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:615766..617451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8005Gvermi8005Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 615766..617451 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8005.t2.start1Gvermi8005.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 615766..615768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8005.t2.CDS1Gvermi8005.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 615766..617451 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8005.t2.exon1Gvermi8005.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 615766..617451 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8005.t2.stop1Gvermi8005.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 617449..617451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8005.t2Gvermi8005.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 615766..617451 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8005.t2 ID=Gvermi8005.t2|Name=Gvermi8005.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=562bp
MQLRVSAKPSALAVVIGVIELLLSEFFKFTSDAAAAWHRRRKLYRTGRFR
IRSNPFLRNPDTFFSSALLAVLLALTLVLELSISSATFPDSSRVPRSHNI
RCFGPKRETRYFNKHGPRTSELGDDRVAAYVTQANCRDSLIDLSIQGPAA
LGQGYPGCLPPFESQAVDVVLAIQGGAVGFVANSEAGDPHLDYGIERDGE
IAAPDMGEELAGTSFWHVMMRSKGGSVAFWTFGEQNASQRIASNLGIPTH
FLEDSPQSFDAESVANVSCFSNSLTCFLEAGRQALAATAVLRKYEEDNLG
VLVSSLKDVQSSLCIFESRMQVEVSWVYLNLFIPEVERNGRNGPTITRLK
IKGNARCLPRLPRQSARMYLDSMERIDLNETMNATEEATFDNMRDVLQKA
AVITGLKTLPGEGVPCQPKGVVNGSTVGTAELVATLVFSAVLLVTAVILM
ASSVVAHCTCPIRTDPFNALWPVQLLVEQRGTNDDELRDACEPRGGSDSR
DTAESATLARDIFSNAEDLWVGVSAQDGSVRLTAHTSQTATLATPGRGSR
DAAHSRSTTSS*
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spliced messenger RNA

>Gvermi8005.t2 ID=Gvermi8005.t2|Name=Gvermi8005.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1686bp|location=Sequence derived from alignment at ScGOVlb_24226:615766..617451+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTTCGCGTCTCTGCGAAGCCTTCCGCCTTGGCCGTCGTCATCGG
CGTCATTGAGCTGCTTCTCAGCGAATTCTTCAAGTTTACTTCCGACGCTG
CCGCGGCGTGGCACCGCCGTAGAAAGCTCTACCGCACCGGCCGCTTTCGC
ATACGCTCCAATCCCTTCTTGCGCAATCCAGACACGTTCTTCTCCTCTGC
ACTCCTGGCTGTGCTGCTCGCCCTCACACTCGTGCTCGAGCTGTCAATCA
GTTCCGCTACCTTTCCAGACTCTTCACGCGTTCCACGTTCCCACAATATT
CGATGCTTTGGCCCAAAACGCGAAACGCGCTACTTTAACAAGCATGGCCC
CCGGACAAGCGAACTTGGCGACGACAGAGTCGCTGCCTATGTTACCCAGG
CAAACTGTCGCGACAGCTTGATCGACCTTTCCATCCAAGGGCCCGCGGCA
TTGGGCCAAGGCTACCCCGGCTGCTTACCACCGTTCGAGTCGCAAGCTGT
GGATGTCGTCCTTGCAATTCAGGGAGGCGCTGTAGGCTTCGTTGCAAACA
GCGAGGCTGGCGATCCTCATCTCGACTACGGCATTGAGCGGGATGGAGAA
ATTGCTGCTCCGGATATGGGCGAAGAGCTTGCTGGGACAAGTTTTTGGCA
CGTCATGATGCGCTCGAAGGGTGGGAGTGTTGCGTTCTGGACGTTTGGCG
AGCAGAACGCTTCCCAGCGCATTGCGTCTAATCTGGGCATTCCAACGCAT
TTTCTCGAGGACTCACCGCAGTCTTTCGACGCTGAGAGTGTGGCTAACGT
CAGCTGTTTCAGCAATTCACTGACGTGTTTTCTAGAGGCAGGCCGACAGG
CGTTGGCTGCTACGGCGGTGCTGCGCAAATACGAAGAAGACAACCTGGGC
GTCTTAGTCTCAAGTCTGAAAGATGTTCAGTCTTCACTCTGCATATTCGA
ATCGCGAATGCAAGTGGAGGTTTCTTGGGTTTATCTTAACTTGTTCATTC
CGGAAGTGGAGCGAAATGGACGAAACGGACCAACGATAACGCGTTTGAAG
ATAAAGGGCAACGCCCGATGCCTACCGCGACTACCACGGCAGTCAGCGCG
CATGTATCTCGACAGCATGGAGCGCATTGACTTGAATGAAACGATGAATG
CCACCGAAGAGGCGACATTCGACAACATGCGCGACGTGCTTCAGAAAGCG
GCGGTGATAACAGGCTTGAAAACGCTGCCTGGAGAGGGTGTGCCTTGCCA
GCCGAAAGGCGTGGTGAACGGAAGCACGGTTGGCACAGCAGAACTTGTGG
CCACTTTGGTGTTTTCTGCTGTGCTACTGGTGACGGCTGTCATTCTTATG
GCTTCAAGTGTAGTGGCGCACTGTACTTGTCCAATTCGGACCGACCCATT
CAACGCACTTTGGCCGGTGCAGTTGCTGGTTGAGCAGAGAGGGACCAATG
ACGACGAGTTGCGAGATGCATGCGAGCCACGGGGCGGGTCGGATTCGCGA
GACACGGCCGAGTCGGCTACCCTCGCACGCGACATTTTCAGCAACGCCGA
AGACCTGTGGGTAGGCGTCTCCGCCCAAGATGGCTCTGTGCGGCTAACGG
CGCACACGTCGCAGACTGCCACGCTCGCAACACCTGGCCGTGGCAGCAGG
GACGCCGCACATTCCCGGAGCACGACATCGAGCTGA
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protein sequence of Gvermi8005.t2

>Gvermi8005.t2 ID=Gvermi8005.t2|Name=Gvermi8005.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=562bp
MQLRVSAKPSALAVVIGVIELLLSEFFKFTSDAAAAWHRRRKLYRTGRFR
IRSNPFLRNPDTFFSSALLAVLLALTLVLELSISSATFPDSSRVPRSHNI
RCFGPKRETRYFNKHGPRTSELGDDRVAAYVTQANCRDSLIDLSIQGPAA
LGQGYPGCLPPFESQAVDVVLAIQGGAVGFVANSEAGDPHLDYGIERDGE
IAAPDMGEELAGTSFWHVMMRSKGGSVAFWTFGEQNASQRIASNLGIPTH
FLEDSPQSFDAESVANVSCFSNSLTCFLEAGRQALAATAVLRKYEEDNLG
VLVSSLKDVQSSLCIFESRMQVEVSWVYLNLFIPEVERNGRNGPTITRLK
IKGNARCLPRLPRQSARMYLDSMERIDLNETMNATEEATFDNMRDVLQKA
AVITGLKTLPGEGVPCQPKGVVNGSTVGTAELVATLVFSAVLLVTAVILM
ASSVVAHCTCPIRTDPFNALWPVQLLVEQRGTNDDELRDACEPRGGSDSR
DTAESATLARDIFSNAEDLWVGVSAQDGSVRLTAHTSQTATLATPGRGSR
DAAHSRSTTSS*
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mRNA from alignment at ScGOVlb_24226:615766..617451+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8005.t2 ID=Gvermi8005.t2|Name=Gvermi8005.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1686bp|location=Sequence derived from alignment at ScGOVlb_24226:615766..617451+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCTTCGCGTCTCTGCGAAGCCTTCCGCCTTGGCCGTCGTCATCGG
CGTCATTGAGCTGCTTCTCAGCGAATTCTTCAAGTTTACTTCCGACGCTG
CCGCGGCGTGGCACCGCCGTAGAAAGCTCTACCGCACCGGCCGCTTTCGC
ATACGCTCCAATCCCTTCTTGCGCAATCCAGACACGTTCTTCTCCTCTGC
ACTCCTGGCTGTGCTGCTCGCCCTCACACTCGTGCTCGAGCTGTCAATCA
GTTCCGCTACCTTTCCAGACTCTTCACGCGTTCCACGTTCCCACAATATT
CGATGCTTTGGCCCAAAACGCGAAACGCGCTACTTTAACAAGCATGGCCC
CCGGACAAGCGAACTTGGCGACGACAGAGTCGCTGCCTATGTTACCCAGG
CAAACTGTCGCGACAGCTTGATCGACCTTTCCATCCAAGGGCCCGCGGCA
TTGGGCCAAGGCTACCCCGGCTGCTTACCACCGTTCGAGTCGCAAGCTGT
GGATGTCGTCCTTGCAATTCAGGGAGGCGCTGTAGGCTTCGTTGCAAACA
GCGAGGCTGGCGATCCTCATCTCGACTACGGCATTGAGCGGGATGGAGAA
ATTGCTGCTCCGGATATGGGCGAAGAGCTTGCTGGGACAAGTTTTTGGCA
CGTCATGATGCGCTCGAAGGGTGGGAGTGTTGCGTTCTGGACGTTTGGCG
AGCAGAACGCTTCCCAGCGCATTGCGTCTAATCTGGGCATTCCAACGCAT
TTTCTCGAGGACTCACCGCAGTCTTTCGACGCTGAGAGTGTGGCTAACGT
CAGCTGTTTCAGCAATTCACTGACGTGTTTTCTAGAGGCAGGCCGACAGG
CGTTGGCTGCTACGGCGGTGCTGCGCAAATACGAAGAAGACAACCTGGGC
GTCTTAGTCTCAAGTCTGAAAGATGTTCAGTCTTCACTCTGCATATTCGA
ATCGCGAATGCAAGTGGAGGTTTCTTGGGTTTATCTTAACTTGTTCATTC
CGGAAGTGGAGCGAAATGGACGAAACGGACCAACGATAACGCGTTTGAAG
ATAAAGGGCAACGCCCGATGCCTACCGCGACTACCACGGCAGTCAGCGCG
CATGTATCTCGACAGCATGGAGCGCATTGACTTGAATGAAACGATGAATG
CCACCGAAGAGGCGACATTCGACAACATGCGCGACGTGCTTCAGAAAGCG
GCGGTGATAACAGGCTTGAAAACGCTGCCTGGAGAGGGTGTGCCTTGCCA
GCCGAAAGGCGTGGTGAACGGAAGCACGGTTGGCACAGCAGAACTTGTGG
CCACTTTGGTGTTTTCTGCTGTGCTACTGGTGACGGCTGTCATTCTTATG
GCTTCAAGTGTAGTGGCGCACTGTACTTGTCCAATTCGGACCGACCCATT
CAACGCACTTTGGCCGGTGCAGTTGCTGGTTGAGCAGAGAGGGACCAATG
ACGACGAGTTGCGAGATGCATGCGAGCCACGGGGCGGGTCGGATTCGCGA
GACACGGCCGAGTCGGCTACCCTCGCACGCGACATTTTCAGCAACGCCGA
AGACCTGTGGGTAGGCGTCTCCGCCCAAGATGGCTCTGTGCGGCTAACGG
CGCACACGTCGCAGACTGCCACGCTCGCAACACCTGGCCGTGGCAGCAGG
GACGCCGCACATTCCCGGAGCACGACATCGAGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:615766..617451+

>Gvermi8005.t2 ID=Gvermi8005.t2|Name=Gvermi8005.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1686bp|location=Sequence derived from alignment at ScGOVlb_24226:615766..617451+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCTTCGCGTCTCTGCGAAGCCTTCCGCCTTGGCCGTCGTCATCGG
CGTCATTGAGCTGCTTCTCAGCGAATTCTTCAAGTTTACTTCCGACGCTG
CCGCGGCGTGGCACCGCCGTAGAAAGCTCTACCGCACCGGCCGCTTTCGC
ATACGCTCCAATCCCTTCTTGCGCAATCCAGACACGTTCTTCTCCTCTGC
ACTCCTGGCTGTGCTGCTCGCCCTCACACTCGTGCTCGAGCTGTCAATCA
GTTCCGCTACCTTTCCAGACTCTTCACGCGTTCCACGTTCCCACAATATT
CGATGCTTTGGCCCAAAACGCGAAACGCGCTACTTTAACAAGCATGGCCC
CCGGACAAGCGAACTTGGCGACGACAGAGTCGCTGCCTATGTTACCCAGG
CAAACTGTCGCGACAGCTTGATCGACCTTTCCATCCAAGGGCCCGCGGCA
TTGGGCCAAGGCTACCCCGGCTGCTTACCACCGTTCGAGTCGCAAGCTGT
GGATGTCGTCCTTGCAATTCAGGGAGGCGCTGTAGGCTTCGTTGCAAACA
GCGAGGCTGGCGATCCTCATCTCGACTACGGCATTGAGCGGGATGGAGAA
ATTGCTGCTCCGGATATGGGCGAAGAGCTTGCTGGGACAAGTTTTTGGCA
CGTCATGATGCGCTCGAAGGGTGGGAGTGTTGCGTTCTGGACGTTTGGCG
AGCAGAACGCTTCCCAGCGCATTGCGTCTAATCTGGGCATTCCAACGCAT
TTTCTCGAGGACTCACCGCAGTCTTTCGACGCTGAGAGTGTGGCTAACGT
CAGCTGTTTCAGCAATTCACTGACGTGTTTTCTAGAGGCAGGCCGACAGG
CGTTGGCTGCTACGGCGGTGCTGCGCAAATACGAAGAAGACAACCTGGGC
GTCTTAGTCTCAAGTCTGAAAGATGTTCAGTCTTCACTCTGCATATTCGA
ATCGCGAATGCAAGTGGAGGTTTCTTGGGTTTATCTTAACTTGTTCATTC
CGGAAGTGGAGCGAAATGGACGAAACGGACCAACGATAACGCGTTTGAAG
ATAAAGGGCAACGCCCGATGCCTACCGCGACTACCACGGCAGTCAGCGCG
CATGTATCTCGACAGCATGGAGCGCATTGACTTGAATGAAACGATGAATG
CCACCGAAGAGGCGACATTCGACAACATGCGCGACGTGCTTCAGAAAGCG
GCGGTGATAACAGGCTTGAAAACGCTGCCTGGAGAGGGTGTGCCTTGCCA
GCCGAAAGGCGTGGTGAACGGAAGCACGGTTGGCACAGCAGAACTTGTGG
CCACTTTGGTGTTTTCTGCTGTGCTACTGGTGACGGCTGTCATTCTTATG
GCTTCAAGTGTAGTGGCGCACTGTACTTGTCCAATTCGGACCGACCCATT
CAACGCACTTTGGCCGGTGCAGTTGCTGGTTGAGCAGAGAGGGACCAATG
ACGACGAGTTGCGAGATGCATGCGAGCCACGGGGCGGGTCGGATTCGCGA
GACACGGCCGAGTCGGCTACCCTCGCACGCGACATTTTCAGCAACGCCGA
AGACCTGTGGGTAGGCGTCTCCGCCCAAGATGGCTCTGTGCGGCTAACGG
CGCACACGTCGCAGACTGCCACGCTCGCAACACCTGGCCGTGGCAGCAGG
GACGCCGCACATTCCCGGAGCACGACATCGAGCTGA
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