Gvermi8085.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8085.t1
Unique NameGvermi8085.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length170
Homology
BLAST of Gvermi8085.t1 vs. uniprot
Match: R7QCG2_CHOCR (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCG2_CHOCR)

HSP 1 Score: 168 bits (426), Expect = 1.950e-50
Identity = 82/169 (48.52%), Postives = 116/169 (68.64%), Query Frame = 0
Query:    1 MELYFQEHDI--SGEDSERRSTSRPSIVLRFASSLATLYSTNEDGDEERLREQVRAILAELAEGDPSVSGTPPASEEAIRTLPYVNVEKNQKGQLSSCPICTDQFELHEVARRLPCGHLFHSDCVTPWLKQHCTCPMCRRELPTDNREYEEEKKRQRRQAAVSSMQSFM 167
            M+LY+QEHD+  +  D+    TS  +++LR A  +A + S     + ERL   V  +LA++++ DPS+ G PPAS E+IRTLP VN+     G  SSCPICT+++E +E A+RLPCGH FH+DCV PWL+ HCTCP+CR ELPTD+  Y + K+ ++R+ AVS +Q  M
Sbjct:    1 MDLYYQEHDVRPNERDTASTQTSTSTVMLRLALLVARM-SEATGPEHERLAAAVDHLLAQVSDTDPSMPGKPPASAESIRTLPVVNMRPGPSGP-SSCPICTEEYEFNEPAKRLPCGHTFHADCVVPWLRSHCTCPLCRAELPTDDLAYMQRKRLEKRREAVSQLQHHM 167          
BLAST of Gvermi8085.t1 vs. uniprot
Match: UPI001E1DB7B7 (E3 ubiquitin-protein ligase RNF181-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB7B7)

HSP 1 Score: 150 bits (379), Expect = 3.410e-43
Identity = 77/178 (43.26%), Postives = 112/178 (62.92%), Query Frame = 0
Query:    1 MELYFQEHDISGEDSERRSTSRPS----IVLRFASSLATLYSTN--EDGDEERLREQVRAILAELAEGDPSVSGTPPASEEAIRTLPYVNV---EKNQKGQLSSCPICTDQFELHEVARRLPCGHLFHSDCVTPWLKQHCTCPMCRRELPTDNREYEEEKKRQRRQAAVSSMQSFMYS 169
            M+LYF EH +    + R   +         L+ A+ LA L  T   ED + +RL    R++LA + + DPS+ GTPPAS++AI  L  V++     +    L SC +CT+ FE +E AR+LPCGH+FH DCV PWL+QHC+CPMCR E+P+ +  YE+ K  ++RQ+AV S++S MY+
Sbjct:    1 MDLYFAEHGVVPGSTSRGGAAELGEGALATLQAAAVLAQLTETAGVEDSETQRLGAVARSLLASVLDQDPSLQGTPPASDDAIAALERVHIVPRAASADADLLSCAVCTEYFERNEPARKLPCGHVFHGDCVIPWLRQHCSCPMCRHEIPSSDPVYEQGKVHRQRQSAVDSLRSSMYN 178          
BLAST of Gvermi8085.t1 vs. uniprot
Match: A0A830C0W6_9LAMI (RING-type E3 ubiquitin transferase n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830C0W6_9LAMI)

HSP 1 Score: 115 bits (289), Expect = 1.690e-28
Identity = 46/95 (48.42%), Postives = 71/95 (74.74%), Query Frame = 0
Query:   55 ILAELAEGDPSVSGTPPASEEAIRTLPYVNVEKN-QKGQLSSCPICTDQFELHEVARRLPCGHLFHSDCVTPWLKQHCTCPMCRRELPTDNREYE 148
            ++ +LAE DP+  GTPPAS+ A+  LP +NV+++  K +L+ C +C D FEL  V +++PC H++H+DC+ PWL+ H +CP+CR ELPTD+ +YE
Sbjct:  136 LIQQLAENDPNRYGTPPASKSAVEALPSINVDEDLMKSELAQCAVCKDDFELGTVVKQMPCKHVYHTDCILPWLELHNSCPVCRHELPTDDPDYE 230          
BLAST of Gvermi8085.t1 vs. uniprot
Match: D8T3I3_SELML (RING-type domain-containing protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T3I3_SELML)

HSP 1 Score: 110 bits (275), Expect = 1.780e-28
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 0
Query:   55 ILAELAEGDPSVSGTPPASEEAIRTLPYVNV-EKNQKGQLSSCPICTDQFELHEVARRLPCGHLFHSDCVTPWLKQHCTCPMCRRELPTDNREY 147
            ++ +LAE DP+  GTPPAS+ AI  +P V++  ++  G    C +C D+FEL    R++PC HL+H DC+ PWL QH +CP+CR E+PTD+ EY
Sbjct:    3 LIQQLAENDPNRYGTPPASKTAIEAMPVVSITSEHMSGDGGQCAVCKDEFELGSEVRQMPCKHLYHGDCILPWLAQHNSCPVCRHEMPTDDPEY 96          
BLAST of Gvermi8085.t1 vs. uniprot
Match: A0A5C7H6G6_9ROSI (RING-type E3 ubiquitin transferase n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7H6G6_9ROSI)

HSP 1 Score: 115 bits (289), Expect = 4.750e-28
Identity = 48/96 (50.00%), Postives = 69/96 (71.88%), Query Frame = 0
Query:   55 ILAELAEGDPSVSGTPPASEEAIRTLPYVNV-EKNQKGQLSSCPICTDQFELHEVARRLPCGHLFHSDCVTPWLKQHCTCPMCRRELPTDNREYEE 149
            ++ +LAE DP+  GTPPAS+ A+  LP + + E+      S C +C D FEL+E AR++PC H++HSDC+ PWL+ H +CP+CR ELPTD+ EYE+
Sbjct:  147 LIQQLAENDPNRYGTPPASKSAVEGLPNIKITEQMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHSDCILPWLEMHNSCPVCRYELPTDDAEYEQ 242          
BLAST of Gvermi8085.t1 vs. uniprot
Match: A0A7J9EI15_9ROSI (RING-type domain-containing protein n=1 Tax=Gossypium trilobum TaxID=34281 RepID=A0A7J9EI15_9ROSI)

HSP 1 Score: 112 bits (279), Expect = 6.180e-28
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 0
Query:   55 ILAELAEGDPSVSGTPPASEEAIRTLPYVNVEK-NQKGQLSSCPICTDQFELHEVARRLPCGHLFHSDCVTPWLKQHCTCPMCRRELPTDNREYE 148
            ++ +LAE DP+  GTPPAS+ A+ TLP VN+ K N   + + C +C D+FE    A+++PC HL+H DC+ PWL+ H +CP+CR ELPTD+ +YE
Sbjct:   32 LIQQLAENDPNRYGTPPASKSAMDTLPSVNISKHNLSSEFNQCAVCMDEFEDGTEAKQMPCKHLYHKDCIFPWLELHNSCPVCRHELPTDDPDYE 126          
BLAST of Gvermi8085.t1 vs. uniprot
Match: UPI000CD93744 (E3 ubiquitin-protein ligase RING1 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD93744)

HSP 1 Score: 115 bits (289), Expect = 7.290e-28
Identity = 53/137 (38.69%), Postives = 80/137 (58.39%), Query Frame = 0
Query:   24 SIVLRFASSLATLYSTNEDGDEERLR-----------EQVRAILAELAEGDPSVSGTPPASEEAIRTLPYVNVEKNQ-KGQLSSCPICTDQFELHEVARRLPCGHLFHSDCVTPWLKQHCTCPMCRRELPTDNREYE 148
            S +    +++  +   N DGD    R             +  ++ +LAE DP+  GTPPAS+  I+ LP + +  +  +   S C +C D FELHE A++LPC H++H DC+ PWL+ H +CP+CR ELPTD++EYE
Sbjct:  144 STLRAGGANIQFVIENNSDGDPSGFRLPANLGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSVIQNLPNIKITSDLLESDYSDCAVCKDSFELHEQAKQLPCKHVYHQDCIVPWLELHNSCPVCRYELPTDDQEYE 280          
BLAST of Gvermi8085.t1 vs. uniprot
Match: A0A2J6KV11_LACSA (RING-type E3 ubiquitin transferase n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6KV11_LACSA)

HSP 1 Score: 115 bits (289), Expect = 8.360e-28
Identity = 53/137 (38.69%), Postives = 80/137 (58.39%), Query Frame = 0
Query:   24 SIVLRFASSLATLYSTNEDGDEERLR-----------EQVRAILAELAEGDPSVSGTPPASEEAIRTLPYVNVEKNQ-KGQLSSCPICTDQFELHEVARRLPCGHLFHSDCVTPWLKQHCTCPMCRRELPTDNREYE 148
            S +    +++  +   N DGD    R             +  ++ +LAE DP+  GTPPAS+  I+ LP + +  +  +   S C +C D FELHE A++LPC H++H DC+ PWL+ H +CP+CR ELPTD++EYE
Sbjct:  144 STLRAGGANIQFVIENNSDGDPSGFRLPANLGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSVIQNLPNIKITSDLLESDYSDCAVCKDSFELHEQAKQLPCKHVYHQDCIVPWLELHNSCPVCRYELPTDDQEYE 280          
BLAST of Gvermi8085.t1 vs. uniprot
Match: A0A2P6P1I4_ROSCH (RING-type E3 ubiquitin transferase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P1I4_ROSCH)

HSP 1 Score: 115 bits (288), Expect = 1.190e-27
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 0
Query:   55 ILAELAEGDPSVSGTPPASEEAIRTLPYVNVEKNQKGQLSS-CPICTDQFELHEVARRLPCGHLFHSDCVTPWLKQHCTCPMCRRELPTDNREYEE 149
            ++ +LAE DP+  GTPPAS+ AI  LP V + K      SS C +C D FEL E A+++PC HL+HSDC+ PWL+ H +CP+CR ELPTD+ EYE+
Sbjct:  182 LIQQLAENDPNRYGTPPASKSAIEALPVVKISKELLDSDSSQCAVCKDSFELGEEAKQMPCKHLYHSDCILPWLELHNSCPVCRHELPTDDSEYEQ 277          
BLAST of Gvermi8085.t1 vs. uniprot
Match: UPI000D62D084 (E3 ubiquitin-protein ligase RING1-like isoform X2 n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D62D084)

HSP 1 Score: 113 bits (283), Expect = 3.340e-27
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 0
Query:   55 ILAELAEGDPSVSGTPPASEEAIRTLPYVNVEKNQ-KGQLSSCPICTDQFELHEVARRLPCGHLFHSDCVTPWLKQHCTCPMCRRELPTDNREYE 148
            ++ +LAE DP+  GTPPAS+  +R LP + +  +  +   S C +C D FELHE A++LPC H++H DC+ PWL+ H +CP+CR ELPTD+ EYE
Sbjct:  152 LIQQLAENDPNRYGTPPASKSVVRNLPSIKITDDLLESDYSDCAVCKDSFELHEEAKQLPCKHVYHQDCIIPWLELHNSCPVCRFELPTDDPEYE 246          
The following BLAST results are available for this feature:
BLAST of Gvermi8085.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QCG2_CHOCR1.950e-5048.52RING-type domain-containing protein n=1 Tax=Chondr... [more]
UPI001E1DB7B73.410e-4343.26E3 ubiquitin-protein ligase RNF181-like n=1 Tax=Me... [more]
A0A830C0W6_9LAMI1.690e-2848.42RING-type E3 ubiquitin transferase n=1 Tax=Phtheir... [more]
D8T3I3_SELML1.780e-2847.87RING-type domain-containing protein (Fragment) n=3... [more]
A0A5C7H6G6_9ROSI4.750e-2850.00RING-type E3 ubiquitin transferase n=1 Tax=Acer ya... [more]
A0A7J9EI15_9ROSI6.180e-2849.47RING-type domain-containing protein n=1 Tax=Gossyp... [more]
UPI000CD937447.290e-2838.69E3 ubiquitin-protein ligase RING1 n=1 Tax=Lactuca ... [more]
A0A2J6KV11_LACSA8.360e-2838.69RING-type E3 ubiquitin transferase n=2 Tax=Lactuca... [more]
A0A2P6P1I4_ROSCH1.190e-2753.13RING-type E3 ubiquitin transferase n=1 Tax=Rosa ch... [more]
UPI000D62D0843.340e-2749.47E3 ubiquitin-protein ligase RING1-like isoform X2 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 144..164
NoneNo IPR availablePANTHERPTHR15710E3 UBIQUITIN-PROTEIN LIGASE PRAJAcoord: 56..159
NoneNo IPR availablePANTHERPTHR15710:SF41OS06G0101300 PROTEINcoord: 56..159
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 96..137
e-value: 1.00647E-22
score: 83.1201
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 80..143
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 96..136
e-value: 1.5E-6
score: 37.8
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 95..137
e-value: 2.6E-13
score: 50.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 96..137
score: 12.872856
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 61..144
e-value: 7.4E-23
score: 82.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:957496..958005 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8085.t1Gvermi8085.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 957496..958005 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8085.t1 ID=Gvermi8085.t1|Name=Gvermi8085.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=170bp
MELYFQEHDISGEDSERRSTSRPSIVLRFASSLATLYSTNEDGDEERLRE
QVRAILAELAEGDPSVSGTPPASEEAIRTLPYVNVEKNQKGQLSSCPICT
DQFELHEVARRLPCGHLFHSDCVTPWLKQHCTCPMCRRELPTDNREYEEE
KKRQRRQAAVSSMQSFMYS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD