Gvermi8085.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8085.t1
Unique NameGvermi8085.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:957496..958005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3694.POPTR_0015s05600.1
PFAMszf-RING_2,zinc_ribbon_9
Max annot lvl35493|Streptophyta
KEGG koko:K11982
GOsGO:0000003,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009653,GO:0009791,GO:0009826,GO:0009888,GO:0009987,GO:0010026,GO:0010154,GO:0016043,GO:0016049,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0022412,GO:0022414,GO:0030154,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0036211,GO:0040007,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0048316,GO:0048468,GO:0048589,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0060560,GO:0061458,GO:0070647,GO:0071704,GO:0071840,GO:0090376,GO:0090378,GO:0090558,GO:0140096,GO:1901564
Evalue9.73e-28
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,37NKN@33090|Viridiplantae,3GG5Y@35493|Streptophyta,4JNF7@91835|fabids
EC2.3.2.27
DescriptionE3 ubiquitin-protein ligase
COG categoryO
BRITEko00000,ko01000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8085Gvermi8085Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 957496..958005 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8085.t1.start1Gvermi8085.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 957496..957498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8085.t1.CDS1Gvermi8085.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 957496..958005 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8085.t1.exon1Gvermi8085.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 957496..958005 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8085.t1.stop1Gvermi8085.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 958003..958005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8085.t1Gvermi8085.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 957496..958005 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8085.t1 ID=Gvermi8085.t1|Name=Gvermi8085.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=170bp
MELYFQEHDISGEDSERRSTSRPSIVLRFASSLATLYSTNEDGDEERLRE
QVRAILAELAEGDPSVSGTPPASEEAIRTLPYVNVEKNQKGQLSSCPICT
DQFELHEVARRLPCGHLFHSDCVTPWLKQHCTCPMCRRELPTDNREYEEE
KKRQRRQAAVSSMQSFMYS*
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spliced messenger RNA

>Gvermi8085.t1 ID=Gvermi8085.t1|Name=Gvermi8085.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=510bp|location=Sequence derived from alignment at ScGOVlb_24226:957496..958005+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTTTACTTTCAAGAACATGACATCAGTGGCGAGGATTCGGAACG
TCGATCAACATCGCGCCCGTCCATAGTCCTTCGTTTCGCCTCCTCCTTGG
CAACGCTGTACTCCACGAACGAAGACGGCGATGAAGAGCGTTTGAGAGAA
CAAGTGCGCGCAATTTTGGCAGAGCTGGCTGAAGGGGACCCGTCCGTGTC
CGGCACTCCCCCGGCCTCTGAAGAAGCGATTCGGACATTACCGTATGTCA
ACGTCGAGAAGAACCAAAAGGGACAGCTCAGCTCTTGCCCGATATGCACG
GATCAATTCGAACTGCACGAGGTGGCCAGAAGGTTGCCTTGCGGTCACTT
ATTTCACTCCGACTGTGTTACTCCATGGTTGAAGCAACACTGCACGTGCC
CCATGTGCAGACGAGAACTACCTACAGACAATCGCGAATACGAAGAGGAG
AAGAAACGGCAGAGGAGACAAGCTGCCGTTTCATCCATGCAGTCGTTTAT
GTACAGTTGA
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protein sequence of Gvermi8085.t1

>Gvermi8085.t1 ID=Gvermi8085.t1|Name=Gvermi8085.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=170bp
MELYFQEHDISGEDSERRSTSRPSIVLRFASSLATLYSTNEDGDEERLRE
QVRAILAELAEGDPSVSGTPPASEEAIRTLPYVNVEKNQKGQLSSCPICT
DQFELHEVARRLPCGHLFHSDCVTPWLKQHCTCPMCRRELPTDNREYEEE
KKRQRRQAAVSSMQSFMYS*
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mRNA from alignment at ScGOVlb_24226:957496..958005+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8085.t1 ID=Gvermi8085.t1|Name=Gvermi8085.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=510bp|location=Sequence derived from alignment at ScGOVlb_24226:957496..958005+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACTTTACTTTCAAGAACATGACATCAGTGGCGAGGATTCGGAACG
TCGATCAACATCGCGCCCGTCCATAGTCCTTCGTTTCGCCTCCTCCTTGG
CAACGCTGTACTCCACGAACGAAGACGGCGATGAAGAGCGTTTGAGAGAA
CAAGTGCGCGCAATTTTGGCAGAGCTGGCTGAAGGGGACCCGTCCGTGTC
CGGCACTCCCCCGGCCTCTGAAGAAGCGATTCGGACATTACCGTATGTCA
ACGTCGAGAAGAACCAAAAGGGACAGCTCAGCTCTTGCCCGATATGCACG
GATCAATTCGAACTGCACGAGGTGGCCAGAAGGTTGCCTTGCGGTCACTT
ATTTCACTCCGACTGTGTTACTCCATGGTTGAAGCAACACTGCACGTGCC
CCATGTGCAGACGAGAACTACCTACAGACAATCGCGAATACGAAGAGGAG
AAGAAACGGCAGAGGAGACAAGCTGCCGTTTCATCCATGCAGTCGTTTAT
GTACAGTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:957496..958005+

>Gvermi8085.t1 ID=Gvermi8085.t1|Name=Gvermi8085.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=510bp|location=Sequence derived from alignment at ScGOVlb_24226:957496..958005+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACTTTACTTTCAAGAACATGACATCAGTGGCGAGGATTCGGAACG
TCGATCAACATCGCGCCCGTCCATAGTCCTTCGTTTCGCCTCCTCCTTGG
CAACGCTGTACTCCACGAACGAAGACGGCGATGAAGAGCGTTTGAGAGAA
CAAGTGCGCGCAATTTTGGCAGAGCTGGCTGAAGGGGACCCGTCCGTGTC
CGGCACTCCCCCGGCCTCTGAAGAAGCGATTCGGACATTACCGTATGTCA
ACGTCGAGAAGAACCAAAAGGGACAGCTCAGCTCTTGCCCGATATGCACG
GATCAATTCGAACTGCACGAGGTGGCCAGAAGGTTGCCTTGCGGTCACTT
ATTTCACTCCGACTGTGTTACTCCATGGTTGAAGCAACACTGCACGTGCC
CCATGTGCAGACGAGAACTACCTACAGACAATCGCGAATACGAAGAGGAG
AAGAAACGGCAGAGGAGACAAGCTGCCGTTTCATCCATGCAGTCGTTTAT
GTACAGTTGA
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