Gvermi8148.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8148.t1
Unique NameGvermi8148.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length318
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1241548..1242677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8148Gvermi8148Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1241548..1242677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8148.t1Gvermi8148.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1241548..1242677 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8148.t1.start1Gvermi8148.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1241548..1241550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8148.t1.CDS1Gvermi8148.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1241548..1242066 +
Gvermi8148.t1.CDS2Gvermi8148.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1242155..1242340 +
Gvermi8148.t1.CDS3Gvermi8148.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1242429..1242677 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8148.t1.exon1Gvermi8148.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1241548..1242066 +
Gvermi8148.t1.exon2Gvermi8148.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1242155..1242340 +
Gvermi8148.t1.exon3Gvermi8148.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1242429..1242677 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8148.t1.intron1Gvermi8148.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 1242067..1242154 +
Gvermi8148.t1.intron2Gvermi8148.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 1242341..1242428 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8148.t1.stop1Gvermi8148.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1242675..1242677 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8148.t1 ID=Gvermi8148.t1|Name=Gvermi8148.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=318bp
MPPSGRTGDALDDLECILDSLPKVVIGDADEVVAIKDTLPPADFCEAQEQ
ETRSKGENDDETQAIKASMRMKSKKAMRENTAKNTRRKNDSRAPRAAQKR
PPKDKNRAQRCPPTHSIRKTNVRNQKERVDGASNRIRGTLCENSGDPTRN
SSQEKDDQQFLQNLQRMAEQRQQIEKRRCVARNAQIEKKMKVILGTAEQS
MREIVRSTASKISKTARSVVNMMPKALDKELEMFRTMLAEDKKLLNTKTD
SVTTVSGTLQNELKDLRMQLKANENGFDEKIQNATAHAKRSILKRRDFRG
SLIKVEHILKKSGKYQE*
back to top

spliced messenger RNA

>Gvermi8148.t1 ID=Gvermi8148.t1|Name=Gvermi8148.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=954bp|location=Sequence derived from alignment at ScGOVlb_24226:1241548..1242677+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCGAGCGGCCGAACTGGGGACGCCCTCGATGACCTTGAATGCAT
TTTGGATTCGCTCCCCAAAGTTGTCATCGGTGATGCCGACGAAGTCGTTG
CTATCAAAGATACACTTCCCCCGGCTGATTTCTGCGAAGCTCAGGAGCAA
GAAACGAGGAGCAAAGGAGAAAATGATGATGAGACACAAGCTATCAAGGC
CTCCATGCGAATGAAATCCAAGAAAGCCATGCGTGAAAATACTGCAAAGA
ACACAAGGCGCAAGAATGACTCTCGCGCTCCAAGAGCTGCTCAAAAGCGA
CCTCCTAAGGATAAAAATCGAGCACAACGATGCCCTCCTACGCATTCCAT
TCGTAAGACAAACGTGAGAAACCAAAAGGAGAGGGTCGATGGTGCATCGA
ATCGGATTCGAGGGACTTTATGCGAAAATAGTGGGGATCCCACTAGAAAT
TCGTCCCAGGAAAAAGACGACCAGCAATTCTTACAAAACCTCCAGCGCAT
GGCCGAACAAAGGCAACAGATTGAAAAGCGTAGGTGCGTGGCACGGAATG
CCCAGATTGAAAAGAAAATGAAGGTCATCCTGGGAACAGCAGAACAAAGC
ATGCGAGAAATAGTTAGATCCACAGCCAGTAAAATCTCAAAAACAGCTCG
AAGCGTGGTGAACATGATGCCTAAAGCTCTGGATAAAGAATTGGAAATGT
TTAGGACAATGCTTGCGGAAGATAAGAAACTATTGAACACCAAGACAGAT
TCCGTCACCACCGTCTCGGGCACGCTTCAGAATGAACTTAAAGATCTTCG
GATGCAACTCAAGGCGAACGAGAACGGTTTCGACGAGAAGATTCAGAATG
CTACTGCACATGCAAAGAGAAGCATTCTGAAGCGCCGAGACTTCCGCGGC
TCTCTCATTAAAGTAGAGCATATACTAAAGAAATCAGGCAAATATCAAGA
ATGA
back to top

protein sequence of Gvermi8148.t1

>Gvermi8148.t1 ID=Gvermi8148.t1|Name=Gvermi8148.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=318bp
MPPSGRTGDALDDLECILDSLPKVVIGDADEVVAIKDTLPPADFCEAQEQ
ETRSKGENDDETQAIKASMRMKSKKAMRENTAKNTRRKNDSRAPRAAQKR
PPKDKNRAQRCPPTHSIRKTNVRNQKERVDGASNRIRGTLCENSGDPTRN
SSQEKDDQQFLQNLQRMAEQRQQIEKRRCVARNAQIEKKMKVILGTAEQS
MREIVRSTASKISKTARSVVNMMPKALDKELEMFRTMLAEDKKLLNTKTD
SVTTVSGTLQNELKDLRMQLKANENGFDEKIQNATAHAKRSILKRRDFRG
SLIKVEHILKKSGKYQE*
back to top

mRNA from alignment at ScGOVlb_24226:1241548..1242677+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8148.t1 ID=Gvermi8148.t1|Name=Gvermi8148.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1130bp|location=Sequence derived from alignment at ScGOVlb_24226:1241548..1242677+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCCGAGCGGCCGAACTGGGGACGCCCTCGATGACCTTGAATGCAT
TTTGGATTCGCTCCCCAAAGTTGTCATCGGTGATGCCGACGAAGTCGTTG
CTATCAAAGATACACTTCCCCCGGCTGATTTCTGCGAAGCTCAGGAGCAA
GAAACGAGGAGCAAAGGAGAAAATGATGATGAGACACAAGCTATCAAGGC
CTCCATGCGAATGAAATCCAAGAAAGCCATGCGTGAAAATACTGCAAAGA
ACACAAGGCGCAAGAATGACTCTCGCGCTCCAAGAGCTGCTCAAAAGCGA
CCTCCTAAGGATAAAAATCGAGCACAACGATGCCCTCCTACGCATTCCAT
TCGTAAGACAAACGTGAGAAACCAAAAGGAGAGGGTCGATGGTGCATCGA
ATCGGATTCGAGGGACTTTATGCGAAAATAGTGGGGATCCCACTAGAAAT
TCGTCCCAGGAAAAAGACGACCAGCAATTCTTACAAAACCTCCAGCGCAT
GGCCGAACAAAGGCAACAGGTAGGTTCGCAGATGTGATCCGAGTCGCGAA
CAGTTCAAGTTTGAACACGGTCATAATACATGTATACGATTCTGACCATG
TTCACAGATTGAAAAGCGTAGGTGCGTGGCACGGAATGCCCAGATTGAAA
AGAAAATGAAGGTCATCCTGGGAACAGCAGAACAAAGCATGCGAGAAATA
GTTAGATCCACAGCCAGTAAAATCTCAAAAACAGCTCGAAGCGTGGTGAA
CATGATGCCTAAAGCTCTGGATAAAGAATTGGAAATGTTTAGGGTACGTG
AAGACGCCAACGTATGCAGTAAATCTCATTAGATTTGTTCCTTTTGAGCT
CTGACGTGCCATTCTCTCTGTCATCTGGAAGACAATGCTTGCGGAAGATA
AGAAACTATTGAACACCAAGACAGATTCCGTCACCACCGTCTCGGGCACG
CTTCAGAATGAACTTAAAGATCTTCGGATGCAACTCAAGGCGAACGAGAA
CGGTTTCGACGAGAAGATTCAGAATGCTACTGCACATGCAAAGAGAAGCA
TTCTGAAGCGCCGAGACTTCCGCGGCTCTCTCATTAAAGTAGAGCATATA
CTAAAGAAATCAGGCAAATATCAAGAATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24226:1241548..1242677+

>Gvermi8148.t1 ID=Gvermi8148.t1|Name=Gvermi8148.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=954bp|location=Sequence derived from alignment at ScGOVlb_24226:1241548..1242677+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCCGAGCGGCCGAACTGGGGACGCCCTCGATGACCTTGAATGCAT
TTTGGATTCGCTCCCCAAAGTTGTCATCGGTGATGCCGACGAAGTCGTTG
CTATCAAAGATACACTTCCCCCGGCTGATTTCTGCGAAGCTCAGGAGCAA
GAAACGAGGAGCAAAGGAGAAAATGATGATGAGACACAAGCTATCAAGGC
CTCCATGCGAATGAAATCCAAGAAAGCCATGCGTGAAAATACTGCAAAGA
ACACAAGGCGCAAGAATGACTCTCGCGCTCCAAGAGCTGCTCAAAAGCGA
CCTCCTAAGGATAAAAATCGAGCACAACGATGCCCTCCTACGCATTCCAT
TCGTAAGACAAACGTGAGAAACCAAAAGGAGAGGGTCGATGGTGCATCGA
ATCGGATTCGAGGGACTTTATGCGAAAATAGTGGGGATCCCACTAGAAAT
TCGTCCCAGGAAAAAGACGACCAGCAATTCTTACAAAACCTCCAGCGCAT
GGCCGAACAAAGGCAACAGATTGAAAAGCGTAGGTGCGTGGCACGGAATG
CCCAGATTGAAAAGAAAATGAAGGTCATCCTGGGAACAGCAGAACAAAGC
ATGCGAGAAATAGTTAGATCCACAGCCAGTAAAATCTCAAAAACAGCTCG
AAGCGTGGTGAACATGATGCCTAAAGCTCTGGATAAAGAATTGGAAATGT
TTAGGACAATGCTTGCGGAAGATAAGAAACTATTGAACACCAAGACAGAT
TCCGTCACCACCGTCTCGGGCACGCTTCAGAATGAACTTAAAGATCTTCG
GATGCAACTCAAGGCGAACGAGAACGGTTTCGACGAGAAGATTCAGAATG
CTACTGCACATGCAAAGAGAAGCATTCTGAAGCGCCGAGACTTCCGCGGC
TCTCTCATTAAAGTAGAGCATATACTAAAGAAATCAGGCAAATATCAAGA
ATGA
back to top