Gvermi8016.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8016.t1
Unique NameGvermi8016.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:670478..671107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMB139CT
Preferred nameTPP1
PFAMsPeptidase_S24,Peptidase_S26
Max annot lvl2759|Eukaryota
KEGG koko:K03100
KEGG Pathwayko02024,ko03060,map02024,map03060
GOsGO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009668,GO:0009987,GO:0010027,GO:0010467,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0019538,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0051604,GO:0055035,GO:0061024,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564
Evalue6.26e-69
EggNOG OGsCOG0681@1|root,KOG0171@2759|Eukaryota
EC3.4.21.89
Descriptionserine-type peptidase activity
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8016Gvermi8016Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 670478..671107 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8016.t1.start1Gvermi8016.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 670478..670480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8016.t1.CDS1Gvermi8016.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 670478..671107 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8016.t1.exon1Gvermi8016.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 670478..671107 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8016.t1.stop1Gvermi8016.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 671105..671107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8016.t1Gvermi8016.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 670478..671107 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8016.t1 ID=Gvermi8016.t1|Name=Gvermi8016.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=210bp
MNLMPEQRDSERNQTKEASKPLEIEKKPWFRRVLEDDQFDDLRTFTLAFL
VALFVRSTMIEPRYIPSLSMYPTFDIGDQFLVDKLSRFVRPPHDNDIVVF
EPPLALQERGYKKSDAFIKRIVARGGDRVHIHDGLVEVNGVARKEQFIKE
SPNYEWGPGTVPDGFVMVLGDNRNNSYDSHVWGFLPEHNIIGRALVRYWP
PARFGTTFF*
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spliced messenger RNA

>Gvermi8016.t1 ID=Gvermi8016.t1|Name=Gvermi8016.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=630bp|location=Sequence derived from alignment at ScGOVlb_24226:670478..671107+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCTTATGCCAGAGCAGCGAGACTCCGAAAGGAATCAGACAAAAGA
AGCTTCCAAACCTCTTGAAATCGAAAAAAAACCTTGGTTTCGGCGAGTGT
TAGAAGACGACCAATTCGATGACTTGCGCACGTTTACCCTGGCTTTTTTG
GTTGCGCTGTTCGTACGTTCCACCATGATCGAACCGAGATACATTCCCTC
CCTTTCTATGTACCCCACGTTTGATATTGGCGACCAATTTCTGGTAGACA
AGTTATCCCGTTTCGTACGCCCCCCCCACGACAACGATATCGTTGTGTTC
GAACCCCCGCTTGCCTTGCAAGAACGAGGGTACAAAAAGAGCGATGCGTT
TATCAAGCGCATCGTCGCGCGCGGTGGCGATCGCGTGCACATACACGACG
GTCTGGTGGAAGTTAACGGAGTTGCCAGGAAAGAGCAATTTATTAAGGAG
AGTCCTAATTACGAGTGGGGTCCTGGAACCGTGCCTGACGGATTTGTCAT
GGTGTTGGGAGACAACCGAAACAACAGCTACGACTCACATGTGTGGGGAT
TTTTGCCAGAGCACAACATTATCGGAAGAGCTCTGGTGCGATATTGGCCG
CCGGCTCGCTTTGGCACAACATTCTTTTGA
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protein sequence of Gvermi8016.t1

>Gvermi8016.t1 ID=Gvermi8016.t1|Name=Gvermi8016.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=210bp
MNLMPEQRDSERNQTKEASKPLEIEKKPWFRRVLEDDQFDDLRTFTLAFL
VALFVRSTMIEPRYIPSLSMYPTFDIGDQFLVDKLSRFVRPPHDNDIVVF
EPPLALQERGYKKSDAFIKRIVARGGDRVHIHDGLVEVNGVARKEQFIKE
SPNYEWGPGTVPDGFVMVLGDNRNNSYDSHVWGFLPEHNIIGRALVRYWP
PARFGTTFF*
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mRNA from alignment at ScGOVlb_24226:670478..671107+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8016.t1 ID=Gvermi8016.t1|Name=Gvermi8016.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=630bp|location=Sequence derived from alignment at ScGOVlb_24226:670478..671107+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCTTATGCCAGAGCAGCGAGACTCCGAAAGGAATCAGACAAAAGA
AGCTTCCAAACCTCTTGAAATCGAAAAAAAACCTTGGTTTCGGCGAGTGT
TAGAAGACGACCAATTCGATGACTTGCGCACGTTTACCCTGGCTTTTTTG
GTTGCGCTGTTCGTACGTTCCACCATGATCGAACCGAGATACATTCCCTC
CCTTTCTATGTACCCCACGTTTGATATTGGCGACCAATTTCTGGTAGACA
AGTTATCCCGTTTCGTACGCCCCCCCCACGACAACGATATCGTTGTGTTC
GAACCCCCGCTTGCCTTGCAAGAACGAGGGTACAAAAAGAGCGATGCGTT
TATCAAGCGCATCGTCGCGCGCGGTGGCGATCGCGTGCACATACACGACG
GTCTGGTGGAAGTTAACGGAGTTGCCAGGAAAGAGCAATTTATTAAGGAG
AGTCCTAATTACGAGTGGGGTCCTGGAACCGTGCCTGACGGATTTGTCAT
GGTGTTGGGAGACAACCGAAACAACAGCTACGACTCACATGTGTGGGGAT
TTTTGCCAGAGCACAACATTATCGGAAGAGCTCTGGTGCGATATTGGCCG
CCGGCTCGCTTTGGCACAACATTCTTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:670478..671107+

>Gvermi8016.t1 ID=Gvermi8016.t1|Name=Gvermi8016.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=630bp|location=Sequence derived from alignment at ScGOVlb_24226:670478..671107+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCTTATGCCAGAGCAGCGAGACTCCGAAAGGAATCAGACAAAAGA
AGCTTCCAAACCTCTTGAAATCGAAAAAAAACCTTGGTTTCGGCGAGTGT
TAGAAGACGACCAATTCGATGACTTGCGCACGTTTACCCTGGCTTTTTTG
GTTGCGCTGTTCGTACGTTCCACCATGATCGAACCGAGATACATTCCCTC
CCTTTCTATGTACCCCACGTTTGATATTGGCGACCAATTTCTGGTAGACA
AGTTATCCCGTTTCGTACGCCCCCCCCACGACAACGATATCGTTGTGTTC
GAACCCCCGCTTGCCTTGCAAGAACGAGGGTACAAAAAGAGCGATGCGTT
TATCAAGCGCATCGTCGCGCGCGGTGGCGATCGCGTGCACATACACGACG
GTCTGGTGGAAGTTAACGGAGTTGCCAGGAAAGAGCAATTTATTAAGGAG
AGTCCTAATTACGAGTGGGGTCCTGGAACCGTGCCTGACGGATTTGTCAT
GGTGTTGGGAGACAACCGAAACAACAGCTACGACTCACATGTGTGGGGAT
TTTTGCCAGAGCACAACATTATCGGAAGAGCTCTGGTGCGATATTGGCCG
CCGGCTCGCTTTGGCACAACATTCTTTTGA
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