Gvermi8088.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8088.t1
Unique NameGvermi8088.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:960623..961443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3827.XP_004508199.1
PFAMsFAA_hydrolase
Max annot lvl35493|Streptophyta
KEGG rclassRC00326,RC00446
KEGG koko:K01557
KEGG ReactionR01085
KEGG Pathwayko00350,ko01100,ko01120,map00350,map01100,map01120
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0016787,GO:0016822,GO:0016823,GO:0018773,GO:0034545,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914
Evalue1.42e-62
EggNOG OGsCOG0179@1|root,KOG1535@2759|Eukaryota,37QKD@33090|Viridiplantae,3G8YQ@35493|Streptophyta,4JRZF@91835|fabids
EC3.7.1.5
DescriptionAcylpyruvase FAHD1
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8088Gvermi8088Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 960623..961443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8088.t1Gvermi8088.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 960623..961443 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8088.t1.stop1Gvermi8088.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 960623..960625 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8088.t1.CDS1Gvermi8088.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 960623..961092 -
Gvermi8088.t1.CDS2Gvermi8088.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 961161..961311 -
Gvermi8088.t1.CDS3Gvermi8088.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 961381..961443 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8088.t1.exon1Gvermi8088.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 960623..961092 -
Gvermi8088.t1.exon2Gvermi8088.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 961161..961311 -
Gvermi8088.t1.exon3Gvermi8088.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 961381..961443 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8088.t1.intron1Gvermi8088.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 961093..961160 -
Gvermi8088.t1.intron2Gvermi8088.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 961312..961380 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8088.t1.start1Gvermi8088.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 961441..961443 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8088.t1 ID=Gvermi8088.t1|Name=Gvermi8088.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=228bp
MANALRHADALLQKASRKAIAVGLNYVDHAKEMGSKADRIAPIWFFKPST
SYLPQNAGPIQIPPTAVAHHEVELGVVIGQPARDVRAADAAKHIAGYVCA
IDVTARNWQSEAKKVGRPWAIAKGCDTFLPLSTVLPADAIVMDEKGVIDV
NLYLDVNGERRQYGSTKDMIWTVPELIEHISSHVTLEEWDLILTGTPSGV
GEFRPGDKVTAGIEGLVDMEFGAVVRN*
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spliced messenger RNA

>Gvermi8088.t1 ID=Gvermi8088.t1|Name=Gvermi8088.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=684bp|location=Sequence derived from alignment at ScGOVlb_24226:960623..961443- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAACGCTCTCCGTCACGCCGATGCGTTGCTTCAAAAAGCATCGCG
AAAAGCAATAGCGGTTGGGCTAAACTACGTCGACCATGCAAAGGAAATGG
GCTCCAAGGCGGATCGAATAGCACCCATTTGGTTCTTCAAACCCTCCACA
TCATACCTTCCTCAAAACGCGGGCCCGATCCAAATTCCCCCCACAGCCGT
CGCTCATCATGAAGTGGAGCTCGGCGTCGTCATAGGTCAACCTGCAAGAG
ATGTTCGCGCAGCCGATGCCGCGAAACACATTGCCGGGTATGTCTGTGCC
ATTGATGTGACGGCGCGGAACTGGCAGTCGGAGGCGAAGAAGGTTGGAAG
ACCATGGGCGATAGCAAAAGGGTGTGATACATTCCTGCCGTTATCGACGG
TGCTGCCTGCCGATGCCATTGTGATGGACGAAAAGGGCGTAATTGACGTG
AACCTTTATCTTGACGTGAACGGTGAGCGCAGGCAGTACGGGTCGACAAA
GGATATGATCTGGACGGTTCCCGAACTTATCGAGCACATCTCGAGCCACG
TAACGCTGGAGGAGTGGGACCTCATTCTAACTGGGACCCCCTCCGGAGTA
GGGGAGTTTCGACCCGGAGATAAGGTCACAGCTGGAATAGAAGGGCTTGT
TGACATGGAATTCGGCGCGGTTGTGCGGAATTGA
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protein sequence of Gvermi8088.t1

>Gvermi8088.t1 ID=Gvermi8088.t1|Name=Gvermi8088.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=228bp
MANALRHADALLQKASRKAIAVGLNYVDHAKEMGSKADRIAPIWFFKPST
SYLPQNAGPIQIPPTAVAHHEVELGVVIGQPARDVRAADAAKHIAGYVCA
IDVTARNWQSEAKKVGRPWAIAKGCDTFLPLSTVLPADAIVMDEKGVIDV
NLYLDVNGERRQYGSTKDMIWTVPELIEHISSHVTLEEWDLILTGTPSGV
GEFRPGDKVTAGIEGLVDMEFGAVVRN*
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mRNA from alignment at ScGOVlb_24226:960623..961443-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8088.t1 ID=Gvermi8088.t1|Name=Gvermi8088.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=821bp|location=Sequence derived from alignment at ScGOVlb_24226:960623..961443- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCAACGCTCTCCGTCACGCCGATGCGTTGCTTCAAAAAGCATCGCG
AAAAGCAATAGCGGTACGTTCCAAAATAACGAGGTCGTACGTCCCGCACA
TCAGCACCTGTTTCTCACACGCTCTATCTTAGGTTGGGCTAAACTACGTC
GACCATGCAAAGGAAATGGGCTCCAAGGCGGATCGAATAGCACCCATTTG
GTTCTTCAAACCCTCCACATCATACCTTCCTCAAAACGCGGGCCCGATCC
AAATTCCCCCCACAGCCGTCGCTCATCATGAAGGTAGGTATCCTGTATCT
CACTTTTGCACAACCCTTCAACACGTTTACTAACACAACCTCCGCCCCCA
GTGGAGCTCGGCGTCGTCATAGGTCAACCTGCAAGAGATGTTCGCGCAGC
CGATGCCGCGAAACACATTGCCGGGTATGTCTGTGCCATTGATGTGACGG
CGCGGAACTGGCAGTCGGAGGCGAAGAAGGTTGGAAGACCATGGGCGATA
GCAAAAGGGTGTGATACATTCCTGCCGTTATCGACGGTGCTGCCTGCCGA
TGCCATTGTGATGGACGAAAAGGGCGTAATTGACGTGAACCTTTATCTTG
ACGTGAACGGTGAGCGCAGGCAGTACGGGTCGACAAAGGATATGATCTGG
ACGGTTCCCGAACTTATCGAGCACATCTCGAGCCACGTAACGCTGGAGGA
GTGGGACCTCATTCTAACTGGGACCCCCTCCGGAGTAGGGGAGTTTCGAC
CCGGAGATAAGGTCACAGCTGGAATAGAAGGGCTTGTTGACATGGAATTC
GGCGCGGTTGTGCGGAATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:960623..961443-

>Gvermi8088.t1 ID=Gvermi8088.t1|Name=Gvermi8088.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=684bp|location=Sequence derived from alignment at ScGOVlb_24226:960623..961443- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCAACGCTCTCCGTCACGCCGATGCGTTGCTTCAAAAAGCATCGCG
AAAAGCAATAGCGGTTGGGCTAAACTACGTCGACCATGCAAAGGAAATGG
GCTCCAAGGCGGATCGAATAGCACCCATTTGGTTCTTCAAACCCTCCACA
TCATACCTTCCTCAAAACGCGGGCCCGATCCAAATTCCCCCCACAGCCGT
CGCTCATCATGAAGTGGAGCTCGGCGTCGTCATAGGTCAACCTGCAAGAG
ATGTTCGCGCAGCCGATGCCGCGAAACACATTGCCGGGTATGTCTGTGCC
ATTGATGTGACGGCGCGGAACTGGCAGTCGGAGGCGAAGAAGGTTGGAAG
ACCATGGGCGATAGCAAAAGGGTGTGATACATTCCTGCCGTTATCGACGG
TGCTGCCTGCCGATGCCATTGTGATGGACGAAAAGGGCGTAATTGACGTG
AACCTTTATCTTGACGTGAACGGTGAGCGCAGGCAGTACGGGTCGACAAA
GGATATGATCTGGACGGTTCCCGAACTTATCGAGCACATCTCGAGCCACG
TAACGCTGGAGGAGTGGGACCTCATTCTAACTGGGACCCCCTCCGGAGTA
GGGGAGTTTCGACCCGGAGATAAGGTCACAGCTGGAATAGAAGGGCTTGT
TGACATGGAATTCGGCGCGGTTGTGCGGAATTGA
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