Gvermi8213.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8213.t1
Unique NameGvermi8213.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1587332..1588503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1254432.SCE1572_32370
Preferred namepip
PFAMsAbhydrolase_1
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K01259
KEGG ReactionR00135
KEGG Pathwayko00330,map00330
Evalue1.08e-106
EggNOG OGsCOG0596@1|root,COG0596@2|Bacteria,1MWW8@1224|Proteobacteria,42P6R@68525|delta/epsilon subdivisions,2WKXS@28221|Deltaproteobacteria,2YUES@29|Myxococcales
EC3.4.11.5
DescriptionBelongs to the peptidase S33 family
COG categoryE
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8213Gvermi8213Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1587332..1588503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8213.t1Gvermi8213.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1587332..1588503 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8213.t1.start1Gvermi8213.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1587332..1587334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8213.t1.CDS1Gvermi8213.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1587332..1587560 +
Gvermi8213.t1.CDS2Gvermi8213.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1587683..1588503 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8213.t1.exon1Gvermi8213.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1587332..1587560 +
Gvermi8213.t1.exon2Gvermi8213.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1587683..1588503 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8213.t1.intron1Gvermi8213.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 1587561..1587682 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8213.t1.stop1Gvermi8213.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1588501..1588503 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8213.t1 ID=Gvermi8213.t1|Name=Gvermi8213.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=350bp
MAGTFTNRFHKELPFMPGRTIFPPIEPYYKDYLQVSKTHKVYFELSGNRN
GVPICFVHGGPGGGTVPAHRGFFDPRVYKIVLFDQRGCGKSQPFACLEEN
TTWDLVQDMERVREAAGIDRWVLFGGSWGSTLAIAYAQEHPHRVLGMILR
GIFLSRKQELDWLYGPTGAAMLYPEAYDDFLAGLPRHMRDAGDIIDTFYA
ILSQEENSEERRIAANAWSNWERTLSSFQRQESPDDSDNDYSDDENLAFA
RLEAHYFVNKSFLSEDDYLLKESQMKKIRYIKTHIVQGRWDVVCPRKSAY
DLARMFDPRCVEVVIVDSAGHSTFEPGIEEALLEAADSFGKEFGSHGKR*
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spliced messenger RNA

>Gvermi8213.t1 ID=Gvermi8213.t1|Name=Gvermi8213.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at ScGOVlb_24226:1587332..1588503+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGCACCTTCACCAATCGCTTTCACAAAGAGCTACCTTTCATGCC
GGGCCGCACAATTTTTCCACCGATCGAACCCTACTACAAGGACTACCTCC
AAGTGTCCAAGACGCACAAAGTGTACTTCGAGCTGTCTGGCAATCGAAAC
GGGGTGCCAATATGCTTTGTGCACGGCGGACCTGGCGGCGGTACCGTTCC
CGCGCACCGCGGGTTTTTTGACCCGAGAGTTTACAAGATTGTGCTCTTTG
ATCAAAGAGGGTGTGGAAAGTCGCAGCCCTTTGCTTGTCTCGAGGAGAAC
ACGACGTGGGACCTGGTGCAAGACATGGAGCGCGTGCGGGAGGCCGCGGG
AATAGACCGCTGGGTACTGTTTGGCGGCAGCTGGGGGTCGACGTTGGCGA
TTGCGTACGCGCAAGAGCATCCGCATCGAGTTTTGGGAATGATTCTTCGC
GGCATATTCCTGTCGCGCAAGCAGGAGTTGGACTGGCTGTACGGGCCAAC
AGGGGCTGCAATGCTGTATCCCGAGGCGTACGATGACTTCTTAGCCGGCC
TGCCACGGCACATGAGAGACGCCGGGGACATCATAGACACGTTTTACGCC
ATCCTGAGTCAAGAAGAAAACAGCGAGGAACGCCGCATTGCTGCCAACGC
ATGGAGCAATTGGGAACGAACTCTTTCCAGCTTCCAGCGTCAAGAATCTC
CAGATGATTCTGATAACGACTATAGCGACGATGAGAATCTGGCTTTTGCC
CGTCTTGAAGCGCACTACTTTGTCAACAAGAGCTTTTTATCTGAAGATGA
TTACTTGTTGAAAGAGTCGCAGATGAAGAAGATTAGATACATCAAAACAC
ACATCGTGCAAGGGCGGTGGGATGTTGTCTGTCCTCGAAAAAGCGCATAT
GACCTTGCTCGTATGTTTGATCCCAGATGCGTCGAAGTTGTTATTGTAGA
TAGCGCTGGTCACTCGACATTTGAGCCGGGAATCGAAGAGGCCCTACTCG
AAGCCGCAGACTCCTTCGGAAAGGAATTTGGGTCGCATGGGAAAAGATGA
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protein sequence of Gvermi8213.t1

>Gvermi8213.t1 ID=Gvermi8213.t1|Name=Gvermi8213.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=350bp
MAGTFTNRFHKELPFMPGRTIFPPIEPYYKDYLQVSKTHKVYFELSGNRN
GVPICFVHGGPGGGTVPAHRGFFDPRVYKIVLFDQRGCGKSQPFACLEEN
TTWDLVQDMERVREAAGIDRWVLFGGSWGSTLAIAYAQEHPHRVLGMILR
GIFLSRKQELDWLYGPTGAAMLYPEAYDDFLAGLPRHMRDAGDIIDTFYA
ILSQEENSEERRIAANAWSNWERTLSSFQRQESPDDSDNDYSDDENLAFA
RLEAHYFVNKSFLSEDDYLLKESQMKKIRYIKTHIVQGRWDVVCPRKSAY
DLARMFDPRCVEVVIVDSAGHSTFEPGIEEALLEAADSFGKEFGSHGKR*
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mRNA from alignment at ScGOVlb_24226:1587332..1588503+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8213.t1 ID=Gvermi8213.t1|Name=Gvermi8213.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1172bp|location=Sequence derived from alignment at ScGOVlb_24226:1587332..1588503+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGGCACCTTCACCAATCGCTTTCACAAAGAGCTACCTTTCATGCC
GGGCCGCACAATTTTTCCACCGATCGAACCCTACTACAAGGACTACCTCC
AAGTGTCCAAGACGCACAAAGTGTACTTCGAGCTGTCTGGCAATCGAAAC
GGGGTGCCAATATGCTTTGTGCACGGCGGACCTGGCGGCGGTACCGTTCC
CGCGCACCGCGGGTTTTTTGACCCGAGAGGTAAGATATCCACCCTTTGGC
GCCTTGTCTATCGGTGCCACCCTTGCCCTGCTTCCGGCGGTGCGGTGGCC
CGACGCAGCGCTATAAATCTGATTTTAATTCCCGTCGTGATGAATTCATA
GTTTACAAGATTGTGCTCTTTGATCAAAGAGGGTGTGGAAAGTCGCAGCC
CTTTGCTTGTCTCGAGGAGAACACGACGTGGGACCTGGTGCAAGACATGG
AGCGCGTGCGGGAGGCCGCGGGAATAGACCGCTGGGTACTGTTTGGCGGC
AGCTGGGGGTCGACGTTGGCGATTGCGTACGCGCAAGAGCATCCGCATCG
AGTTTTGGGAATGATTCTTCGCGGCATATTCCTGTCGCGCAAGCAGGAGT
TGGACTGGCTGTACGGGCCAACAGGGGCTGCAATGCTGTATCCCGAGGCG
TACGATGACTTCTTAGCCGGCCTGCCACGGCACATGAGAGACGCCGGGGA
CATCATAGACACGTTTTACGCCATCCTGAGTCAAGAAGAAAACAGCGAGG
AACGCCGCATTGCTGCCAACGCATGGAGCAATTGGGAACGAACTCTTTCC
AGCTTCCAGCGTCAAGAATCTCCAGATGATTCTGATAACGACTATAGCGA
CGATGAGAATCTGGCTTTTGCCCGTCTTGAAGCGCACTACTTTGTCAACA
AGAGCTTTTTATCTGAAGATGATTACTTGTTGAAAGAGTCGCAGATGAAG
AAGATTAGATACATCAAAACACACATCGTGCAAGGGCGGTGGGATGTTGT
CTGTCCTCGAAAAAGCGCATATGACCTTGCTCGTATGTTTGATCCCAGAT
GCGTCGAAGTTGTTATTGTAGATAGCGCTGGTCACTCGACATTTGAGCCG
GGAATCGAAGAGGCCCTACTCGAAGCCGCAGACTCCTTCGGAAAGGAATT
TGGGTCGCATGGGAAAAGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1587332..1588503+

>Gvermi8213.t1 ID=Gvermi8213.t1|Name=Gvermi8213.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1050bp|location=Sequence derived from alignment at ScGOVlb_24226:1587332..1588503+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGGCACCTTCACCAATCGCTTTCACAAAGAGCTACCTTTCATGCC
GGGCCGCACAATTTTTCCACCGATCGAACCCTACTACAAGGACTACCTCC
AAGTGTCCAAGACGCACAAAGTGTACTTCGAGCTGTCTGGCAATCGAAAC
GGGGTGCCAATATGCTTTGTGCACGGCGGACCTGGCGGCGGTACCGTTCC
CGCGCACCGCGGGTTTTTTGACCCGAGAGTTTACAAGATTGTGCTCTTTG
ATCAAAGAGGGTGTGGAAAGTCGCAGCCCTTTGCTTGTCTCGAGGAGAAC
ACGACGTGGGACCTGGTGCAAGACATGGAGCGCGTGCGGGAGGCCGCGGG
AATAGACCGCTGGGTACTGTTTGGCGGCAGCTGGGGGTCGACGTTGGCGA
TTGCGTACGCGCAAGAGCATCCGCATCGAGTTTTGGGAATGATTCTTCGC
GGCATATTCCTGTCGCGCAAGCAGGAGTTGGACTGGCTGTACGGGCCAAC
AGGGGCTGCAATGCTGTATCCCGAGGCGTACGATGACTTCTTAGCCGGCC
TGCCACGGCACATGAGAGACGCCGGGGACATCATAGACACGTTTTACGCC
ATCCTGAGTCAAGAAGAAAACAGCGAGGAACGCCGCATTGCTGCCAACGC
ATGGAGCAATTGGGAACGAACTCTTTCCAGCTTCCAGCGTCAAGAATCTC
CAGATGATTCTGATAACGACTATAGCGACGATGAGAATCTGGCTTTTGCC
CGTCTTGAAGCGCACTACTTTGTCAACAAGAGCTTTTTATCTGAAGATGA
TTACTTGTTGAAAGAGTCGCAGATGAAGAAGATTAGATACATCAAAACAC
ACATCGTGCAAGGGCGGTGGGATGTTGTCTGTCCTCGAAAAAGCGCATAT
GACCTTGCTCGTATGTTTGATCCCAGATGCGTCGAAGTTGTTATTGTAGA
TAGCGCTGGTCACTCGACATTTGAGCCGGGAATCGAAGAGGCCCTACTCG
AAGCCGCAGACTCCTTCGGAAAGGAATTTGGGTCGCATGGGAAAAGATGA
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