Gvermi8048.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8048.t1
Unique Name	Gvermi8048.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	313

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:882111..883049 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	946362.XP_004996877.1
Preferred name	TTPA
PFAMs	CRAL_TRIO,CRAL_TRIO_N
Max annot lvl	33154\|Opisthokonta
KEGG ko	ko:K18038
GOs	GO:0000003,GO:0001701,GO:0001890,GO:0001892,GO:0003006,GO:0003674,GO:0005215,GO:0005319,GO:0005488,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005829,GO:0006629,GO:0006766,GO:0006775,GO:0006810,GO:0006869,GO:0006873,GO:0006885,GO:0007275,GO:0007584,GO:0008150,GO:0008152,GO:0008289,GO:0008431,GO:0009268,GO:0009605,GO:0009628,GO:0009636,GO:0009790,GO:0009792,GO:0009987,GO:0009991,GO:0010721,GO:0010876,GO:0010941,GO:0012505,GO:0016043,GO:0019725,GO:0019842,GO:0022414,GO:0030003,GO:0030004,GO:0030641,GO:0031410,GO:0031667,GO:0031982,GO:0032501,GO:0032502,GO:0033036,GO:0035091,GO:0036094,GO:0042221,GO:0042360,GO:0042592,GO:0043009,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043325,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045595,GO:0045596,GO:0045851,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048568,GO:0048608,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051093,GO:0051179,GO:0051180,GO:0051234,GO:0051452,GO:0051453,GO:0055067,GO:0055080,GO:0055082,GO:0060284,GO:0060548,GO:0061024,GO:0061458,GO:0065007,GO:0065008,GO:0071702,GO:0071704,GO:0071840,GO:0090210,GO:0090212,GO:0097159,GO:0097708,GO:0098771,GO:0120009,GO:0120013,GO:1901360,GO:1901363,GO:1901615,GO:1901981,GO:1902936
Evalue	3.94e-24
EggNOG OGs	KOG1471@1\|root,KOG1471@2759\|Eukaryota,39MC8@33154\|Opisthokonta
EC	3.1.3.48
Description	negative regulation of establishment of blood-brain barrier
COG category	I
BRITE	ko00000,ko01000,ko01009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8048	Gvermi8048	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 882111..883049 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8048.t1.start1	Gvermi8048.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 882111..882113 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8048.t1.CDS1	Gvermi8048.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 882111..883049 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8048.t1.exon1	Gvermi8048.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 882111..883049 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8048.t1.stop1	Gvermi8048.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 883047..883049 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8048.t1	Gvermi8048.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 882111..883049 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:882111..883049+
coding sequence from alignment at ScGOVlb_24226:882111..883049+

mRNA sequence

>Gvermi8048.t1 ID=Gvermi8048.t1|Name=Gvermi8048.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=313bp
MGSHADHFPHLQQNAAPPAGASALLRALRSLASHPVDHVARVTRADLSAP
FLRSADEEQALVRQLRQSAKQSGDQPVAEADHFWLLAALRARKGDLKRAQ
QLTSNFLAWKRRLAASADAAQHAAQTQKQLRSRFVFVSGNTDRDGRPVIN
VRMAHHDPSAFSALDTVRTLATVLEWTVRTYTAAQTHGVLIVHDFAHLKL
HNLDLRLPAQVQNTFTQTFPVRVAAILVCHPPFFLKGIIGIVTAIMGSKL
RARIRAVDGKDKHILAEYLEQDQIIDDLQMDGTATWTPTQHSQWVERVGT
EALAWAEPSSSE*

spliced messenger RNA

>Gvermi8048.t1 ID=Gvermi8048.t1|Name=Gvermi8048.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=939bp|location=Sequence derived from alignment at ScGOVlb_24226:882111..883049+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCCCACGCGGACCATTTTCCCCACCTGCAGCAAAACGCCGCGCC
GCCCGCGGGCGCTTCCGCCCTGCTCCGTGCCCTCCGCTCACTCGCCAGCC
ACCCGGTCGACCACGTCGCGCGCGTCACCCGCGCAGATCTGTCCGCCCCG
TTCCTTCGCTCCGCAGACGAGGAGCAGGCGCTCGTGCGCCAGCTCAGGCA
ATCGGCAAAGCAGTCCGGAGATCAGCCCGTTGCAGAAGCAGACCACTTCT
GGCTGCTGGCCGCCCTCCGCGCAAGAAAGGGCGACCTCAAGCGCGCGCAG
CAGCTCACCTCAAACTTCCTCGCCTGGAAGcgccgcctcgccgcctcagc
cgacgccgcgcagcacgccgccCAGACCCAGAAGCAGCTACGCTCGCGTT
TTGTGTTCGTCTCGGGCAACACCGACAGAGACGGCCGTCCGGTCATAAAC
GTCAGAATGGCTCATCACGACCCGTCCGCGTTTTCTGCCCTTGACACCGT
GCGCACCCTCGCCACCGTGCTGGAATGGACCGTGCGCACATACACAGCCG
CGCAGACGCACGGTGTACTCATTGTGCACGATTTTGCCCATCTCAAGTTG
CACAACCTCGATCTCAGGCTGCCAGCACAAGTGCAAAACACCTTTACGCA
GACGTTTCCCGTGCGCGTCGCAGCAATCCTTGTGTGCCACCCTCCGTTTT
TCTTGAAAGGCATCATCGGTATCGTCACCGCAATCATGGGCAGCAAGCTC
CGAGCGAGAATCAGGGCTGTTGACGGCAAGGACAAGCATATACTGGCCGA
GTATCTTGAACAGGACCAAATCATCGACGACCTCCAAATGGACGGCACTG
CAACGTGGACCCCTACTCAACATTCGCAATGGGTTGAGCGCGTTGGTACA
GAAGCACTCGCCTGGGCTGAGCCCAGTTCAAGCGAATGA

protein sequence of Gvermi8048.t1

>Gvermi8048.t1 ID=Gvermi8048.t1|Name=Gvermi8048.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=313bp
MGSHADHFPHLQQNAAPPAGASALLRALRSLASHPVDHVARVTRADLSAP
FLRSADEEQALVRQLRQSAKQSGDQPVAEADHFWLLAALRARKGDLKRAQ
QLTSNFLAWKRRLAASADAAQHAAQTQKQLRSRFVFVSGNTDRDGRPVIN
VRMAHHDPSAFSALDTVRTLATVLEWTVRTYTAAQTHGVLIVHDFAHLKL
HNLDLRLPAQVQNTFTQTFPVRVAAILVCHPPFFLKGIIGIVTAIMGSKL
RARIRAVDGKDKHILAEYLEQDQIIDDLQMDGTATWTPTQHSQWVERVGT
EALAWAEPSSSE*

mRNA from alignment at ScGOVlb_24226:882111..883049+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8048.t1 ID=Gvermi8048.t1|Name=Gvermi8048.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=939bp|location=Sequence derived from alignment at ScGOVlb_24226:882111..883049+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTCCCACGCGGACCATTTTCCCCACCTGCAGCAAAACGCCGCGCC
GCCCGCGGGCGCTTCCGCCCTGCTCCGTGCCCTCCGCTCACTCGCCAGCC
ACCCGGTCGACCACGTCGCGCGCGTCACCCGCGCAGATCTGTCCGCCCCG
TTCCTTCGCTCCGCAGACGAGGAGCAGGCGCTCGTGCGCCAGCTCAGGCA
ATCGGCAAAGCAGTCCGGAGATCAGCCCGTTGCAGAAGCAGACCACTTCT
GGCTGCTGGCCGCCCTCCGCGCAAGAAAGGGCGACCTCAAGCGCGCGCAG
CAGCTCACCTCAAACTTCCTCGCCTGGAAGcgccgcctcgccgcctcagc
cgacgccgcgcagcacgccgccCAGACCCAGAAGCAGCTACGCTCGCGTT
TTGTGTTCGTCTCGGGCAACACCGACAGAGACGGCCGTCCGGTCATAAAC
GTCAGAATGGCTCATCACGACCCGTCCGCGTTTTCTGCCCTTGACACCGT
GCGCACCCTCGCCACCGTGCTGGAATGGACCGTGCGCACATACACAGCCG
CGCAGACGCACGGTGTACTCATTGTGCACGATTTTGCCCATCTCAAGTTG
CACAACCTCGATCTCAGGCTGCCAGCACAAGTGCAAAACACCTTTACGCA
GACGTTTCCCGTGCGCGTCGCAGCAATCCTTGTGTGCCACCCTCCGTTTT
TCTTGAAAGGCATCATCGGTATCGTCACCGCAATCATGGGCAGCAAGCTC
CGAGCGAGAATCAGGGCTGTTGACGGCAAGGACAAGCATATACTGGCCGA
GTATCTTGAACAGGACCAAATCATCGACGACCTCCAAATGGACGGCACTG
CAACGTGGACCCCTACTCAACATTCGCAATGGGTTGAGCGCGTTGGTACA
GAAGCACTCGCCTGGGCTGAGCCCAGTTCAAGCGAATGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:882111..883049+

>Gvermi8048.t1 ID=Gvermi8048.t1|Name=Gvermi8048.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=939bp|location=Sequence derived from alignment at ScGOVlb_24226:882111..883049+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTCCCACGCGGACCATTTTCCCCACCTGCAGCAAAACGCCGCGCC
GCCCGCGGGCGCTTCCGCCCTGCTCCGTGCCCTCCGCTCACTCGCCAGCC
ACCCGGTCGACCACGTCGCGCGCGTCACCCGCGCAGATCTGTCCGCCCCG
TTCCTTCGCTCCGCAGACGAGGAGCAGGCGCTCGTGCGCCAGCTCAGGCA
ATCGGCAAAGCAGTCCGGAGATCAGCCCGTTGCAGAAGCAGACCACTTCT
GGCTGCTGGCCGCCCTCCGCGCAAGAAAGGGCGACCTCAAGCGCGCGCAG
CAGCTCACCTCAAACTTCCTCGCCTGGAAGcgccgcctcgccgcctcagc
cgacgccgcgcagcacgccgccCAGACCCAGAAGCAGCTACGCTCGCGTT
TTGTGTTCGTCTCGGGCAACACCGACAGAGACGGCCGTCCGGTCATAAAC
GTCAGAATGGCTCATCACGACCCGTCCGCGTTTTCTGCCCTTGACACCGT
GCGCACCCTCGCCACCGTGCTGGAATGGACCGTGCGCACATACACAGCCG
CGCAGACGCACGGTGTACTCATTGTGCACGATTTTGCCCATCTCAAGTTG
CACAACCTCGATCTCAGGCTGCCAGCACAAGTGCAAAACACCTTTACGCA
GACGTTTCCCGTGCGCGTCGCAGCAATCCTTGTGTGCCACCCTCCGTTTT
TCTTGAAAGGCATCATCGGTATCGTCACCGCAATCATGGGCAGCAAGCTC
CGAGCGAGAATCAGGGCTGTTGACGGCAAGGACAAGCATATACTGGCCGA
GTATCTTGAACAGGACCAAATCATCGACGACCTCCAAATGGACGGCACTG
CAACGTGGACCCCTACTCAACATTCGCAATGGGTTGAGCGCGTTGGTACA
GAAGCACTCGCCTGGGCTGAGCCCAGTTCAAGCGAATGA