Gvermi7967.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7967.t1
Unique NameGvermi7967.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:339067..339789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705797.1
PFAMsperoxidase
Max annot lvl2759|Eukaryota
KEGG rclassRC00092
KEGG koko:K00434
KEGG ReactionR00644
KEGG Pathwayko00053,ko00480,map00053,map00480
Evalue9.16e-107
EggNOG OGsCOG0685@1|root,2QR1E@2759|Eukaryota
EC1.11.1.11
Descriptioncytochrome-c peroxidase activity
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7967Gvermi7967Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 339067..339789 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7967.t1.start1Gvermi7967.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 339067..339069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7967.t1.CDS1Gvermi7967.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 339067..339789 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7967.t1.exon1Gvermi7967.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 339067..339789 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7967.t1.stop1Gvermi7967.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 339787..339789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7967.t1Gvermi7967.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 339067..339789 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7967.t1 ID=Gvermi7967.t1|Name=Gvermi7967.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=241bp
MDPAEEKARQMLIELYQRTPCMPIMVRLAWHDAGSYNKHDGTGGANATIR
FPPESEIDANKGLQVARDLLQPIKDAVPSMSHADLYQLASVVAIEFAGGP
RIPFRLGRVDGLASKCSPDGRLPDANKRMPHLREIFYRMGLNDKEIVLLS
GAHCLGRCYPDRSGFDGPWTADPLKFDNSYFKEILKENPDPKLLRLASDM
ALLDEPDTKKLCEAYAADQDLFFAEYVPAHQKLSELGCQF*
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spliced messenger RNA

>Gvermi7967.t1 ID=Gvermi7967.t1|Name=Gvermi7967.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=723bp|location=Sequence derived from alignment at ScGOVlb_24226:339067..339789+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCCGCCGAGGAAAAGGCGCGCCAGATGCTCATCGAGCTCTACCA
GCGCACGCCGTGCATGCCAATCATGGTGCGCCTCGCCTGGCATGACGCCG
GCAGCTACAACAAGCACGACGGCACCGGCGGCGCTAACGCCACCATCCGC
TTCCCGCCTGAGTCTGAAATCGACGCCAACAAGGGCTTGCAGGTCGCGCG
CGACCTGCTGCAGCCAATCAAGGACGCCGTGCCGTCCATGTCGCACGCCG
ATCTCTACCAGCTAGCCTCCGTCGTCGCCATCGAGTTTGCTGGCGGCCCT
CGCATCCCATTCCGCCTCGGCCGTGTCGACGGGCTGGCTTCGAAATGCTC
GCCTGACGGCCGTCTACCGGACGCCAACAAGCGTATGCCGCATCTCAGAG
AGATCTTTTACCGCATGGGCCTCAACGACAAGGAAATCGTCCTCCTGAGC
GGCGCCCACTGTCTGGGGCGCTGCTACCCGGACCGATCCGGCTTTGACGG
CCCGTGGACGGCGGACCCGCTCAAGTTTGATAACTCTTACTTCAAGGAAA
TCCTCAAGGAGAATCCCGATCCCAAGCTGCTCCGTCTGGCCTCCGACATG
GCGCTGCTGGACGAGCCTGACACCAAAAAGTTGTGCGAGGCCTACGCTGC
CGACCAGGACTTGTTCTTCGCCGAGTACGTCCCGGCCCACCAGAAGCTCA
GCGAGCTCGGTTGCCAGTTTTGA
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protein sequence of Gvermi7967.t1

>Gvermi7967.t1 ID=Gvermi7967.t1|Name=Gvermi7967.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=241bp
MDPAEEKARQMLIELYQRTPCMPIMVRLAWHDAGSYNKHDGTGGANATIR
FPPESEIDANKGLQVARDLLQPIKDAVPSMSHADLYQLASVVAIEFAGGP
RIPFRLGRVDGLASKCSPDGRLPDANKRMPHLREIFYRMGLNDKEIVLLS
GAHCLGRCYPDRSGFDGPWTADPLKFDNSYFKEILKENPDPKLLRLASDM
ALLDEPDTKKLCEAYAADQDLFFAEYVPAHQKLSELGCQF*
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mRNA from alignment at ScGOVlb_24226:339067..339789+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7967.t1 ID=Gvermi7967.t1|Name=Gvermi7967.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=723bp|location=Sequence derived from alignment at ScGOVlb_24226:339067..339789+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCCCGCCGAGGAAAAGGCGCGCCAGATGCTCATCGAGCTCTACCA
GCGCACGCCGTGCATGCCAATCATGGTGCGCCTCGCCTGGCATGACGCCG
GCAGCTACAACAAGCACGACGGCACCGGCGGCGCTAACGCCACCATCCGC
TTCCCGCCTGAGTCTGAAATCGACGCCAACAAGGGCTTGCAGGTCGCGCG
CGACCTGCTGCAGCCAATCAAGGACGCCGTGCCGTCCATGTCGCACGCCG
ATCTCTACCAGCTAGCCTCCGTCGTCGCCATCGAGTTTGCTGGCGGCCCT
CGCATCCCATTCCGCCTCGGCCGTGTCGACGGGCTGGCTTCGAAATGCTC
GCCTGACGGCCGTCTACCGGACGCCAACAAGCGTATGCCGCATCTCAGAG
AGATCTTTTACCGCATGGGCCTCAACGACAAGGAAATCGTCCTCCTGAGC
GGCGCCCACTGTCTGGGGCGCTGCTACCCGGACCGATCCGGCTTTGACGG
CCCGTGGACGGCGGACCCGCTCAAGTTTGATAACTCTTACTTCAAGGAAA
TCCTCAAGGAGAATCCCGATCCCAAGCTGCTCCGTCTGGCCTCCGACATG
GCGCTGCTGGACGAGCCTGACACCAAAAAGTTGTGCGAGGCCTACGCTGC
CGACCAGGACTTGTTCTTCGCCGAGTACGTCCCGGCCCACCAGAAGCTCA
GCGAGCTCGGTTGCCAGTTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:339067..339789+

>Gvermi7967.t1 ID=Gvermi7967.t1|Name=Gvermi7967.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=723bp|location=Sequence derived from alignment at ScGOVlb_24226:339067..339789+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCCCGCCGAGGAAAAGGCGCGCCAGATGCTCATCGAGCTCTACCA
GCGCACGCCGTGCATGCCAATCATGGTGCGCCTCGCCTGGCATGACGCCG
GCAGCTACAACAAGCACGACGGCACCGGCGGCGCTAACGCCACCATCCGC
TTCCCGCCTGAGTCTGAAATCGACGCCAACAAGGGCTTGCAGGTCGCGCG
CGACCTGCTGCAGCCAATCAAGGACGCCGTGCCGTCCATGTCGCACGCCG
ATCTCTACCAGCTAGCCTCCGTCGTCGCCATCGAGTTTGCTGGCGGCCCT
CGCATCCCATTCCGCCTCGGCCGTGTCGACGGGCTGGCTTCGAAATGCTC
GCCTGACGGCCGTCTACCGGACGCCAACAAGCGTATGCCGCATCTCAGAG
AGATCTTTTACCGCATGGGCCTCAACGACAAGGAAATCGTCCTCCTGAGC
GGCGCCCACTGTCTGGGGCGCTGCTACCCGGACCGATCCGGCTTTGACGG
CCCGTGGACGGCGGACCCGCTCAAGTTTGATAACTCTTACTTCAAGGAAA
TCCTCAAGGAGAATCCCGATCCCAAGCTGCTCCGTCTGGCCTCCGACATG
GCGCTGCTGGACGAGCCTGACACCAAAAAGTTGTGCGAGGCCTACGCTGC
CGACCAGGACTTGTTCTTCGCCGAGTACGTCCCGGCCCACCAGAAGCTCA
GCGAGCTCGGTTGCCAGTTTTGA
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