Gvermi7939.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7939.t1
Unique NameGvermi7939.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length160
Homology
BLAST of Gvermi7939.t1 vs. uniprot
Match: A0A2V3IGW2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGW2_9FLOR)

HSP 1 Score: 116 bits (291), Expect = 7.250e-31
Identity = 65/108 (60.19%), Postives = 79/108 (73.15%), Query Frame = 0
Query:    1 MLRAFSSRLASVSHASCSN-VRALATRGGQLASVGSPQKLDPHYIDSAVNAVAGDVHLDQLEPHELSRMRADREKQLDIRNFTLNFGPQHP-KHNFNHSRTATCDASM 106
            MLRAF++RL + +  S S+  R L TRGG+  S     K DP++IDSAVN VAG+V +DQLEPHEL+RMRADREKQLDIRNFTLNFGPQHP K   N S   T  +++
Sbjct:    1 MLRAFTARLPTFARPSLSHHARPLVTRGGKAISSTDLGKADPYFIDSAVNTVAGEVTIDQLEPHELARMRADREKQLDIRNFTLNFGPQHPGKRQLNVSERYTNSSAL 108          
BLAST of Gvermi7939.t1 vs. uniprot
Match: M1VCM1_CYAM1 (NADH dehydrogenase I iron-sulfur protein 49kDa subunit n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VCM1_CYAM1)

HSP 1 Score: 89.7 bits (221), Expect = 5.740e-18
Identity = 51/102 (50.00%), Postives = 60/102 (58.82%), Query Frame = 0
Query:   36 PQKLDPH-YID-SAVNAVAGDVHLDQLEPHELSRMRADREKQLDIRNFTLNFGPQHPKHNFNHSRTATCDASMSLLLKAAHGVLRLVLELDGEVAVKLDPHI 135
            P  L P  Y+D  + NA +G+V + QLEPHE  RMRA+ E   +IRNFTLNFGPQHP                     AAHGVLRLVL+LDGEV    DPH+
Sbjct:   58 PGALQPKDYVDLESYNAFSGEVDVQQLEPHEKERMRANLENAKEIRNFTLNFGPQHP---------------------AAHGVLRLVLQLDGEVVESTDPHV 138          
BLAST of Gvermi7939.t1 vs. uniprot
Match: S0F2R8_CHOCR (NADH dehydrogenase subunit 7 n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F2R8_CHOCR)

HSP 1 Score: 85.5 bits (210), Expect = 1.590e-16
Identity = 53/114 (46.49%), Postives = 61/114 (53.51%), Query Frame = 0
Query:   24 ATRGGQLASVG--SPQKLDPHYIDSAVNAVAGDVHLDQLEPHELSRMRADREKQLDIRNFTLNFGPQHPKHNFNHSRTATCDASMSLLLKAAHGVLRLVLELDGEVAVKLDPHI 135
            A R    A+VG   PQ      IDSA+   AG+V L QL+P+EL R R D E Q  +R   LNFGPQHP                     AAHGV+RLVLELDGE   +LDPHI
Sbjct:   24 AVRSMSTANVGFSRPQSTP---IDSAMRKAAGEVSLPQLQPNELLRFRQDAEHQQSLRTLELNFGPQHP---------------------AAHGVMRLVLELDGEATTRLDPHI 113          
BLAST of Gvermi7939.t1 vs. uniprot
Match: A0A7S0XJI3_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XJI3_9RHOD)

HSP 1 Score: 80.9 bits (198), Expect = 7.130e-15
Identity = 58/173 (33.53%), Postives = 66/173 (38.15%), Query Frame = 0
Query:   45 DSAVNAVAGDVHLDQLEPHELSRMRADREKQLDIRNFTLNFGPQHPKHNFNHSRTATCDASMSLLLKAAHGVLRLVLELDGEVAVKLDPH----------------------------------------------------------------ITRILNHLLAVGCHGMDVG 153
            D  +   +G+VH   L+P E +R  AD E Q  + +FTLNFGPQHP                     AAHGVLRLVLELDGEV  + DPH                                                                ITRILNHLLAV CH MDVG
Sbjct:   37 DVVLQKTSGEVHESDLDPFERNRFLADYEAQKKVSHFTLNFGPQHP---------------------AAHGVLRLVLELDGEVVERADPHVGLLHRGTEKLIEHKTYLQALPYFDRLDYVSMMAQEQCYSLAVEKLLKIDVPRRAKYIRTLFAEITRILNHLLAVPCHAMDVG 188          
BLAST of Gvermi7939.t1 vs. uniprot
Match: M2XIL7_GALSU (NADH dehydrogenase (Ubiquinone) Fe-S protein 2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XIL7_GALSU)

HSP 1 Score: 80.5 bits (197), Expect = 1.030e-14
Identity = 44/96 (45.83%), Postives = 56/96 (58.33%), Query Frame = 0
Query:   40 DPHYIDSAVNAVAGDVHLDQLEPHELSRMRADREKQLDIRNFTLNFGPQHPKHNFNHSRTATCDASMSLLLKAAHGVLRLVLELDGEVAVKLDPHI 135
            DP  +   +   AGD+ L+QL   ELSR+RA  EK ++ +NF+LNFGPQHP                     +AHGVLRLVLELDGE+  + DPHI
Sbjct:   67 DPE-VRKRIQEAAGDMQLEQLTEFELSRLRATCEKPVEFKNFSLNFGPQHP---------------------SAHGVLRLVLELDGELVKRADPHI 140          
BLAST of Gvermi7939.t1 vs. uniprot
Match: A0A5N5SJ53_9CRUS (Complex I-49kD (Fragment) n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5SJ53_9CRUS)

HSP 1 Score: 74.3 bits (181), Expect = 1.130e-12
Identity = 41/81 (50.62%), Postives = 47/81 (58.02%), Query Frame = 0
Query:   73 EKQLDIRNFTLNFGPQHPKHNFNHSRTATCDASMSLLLKAAHGVLRLVLELDGEVAVKLDPHITRILNHLLAVGCHGMDVG 153
            E +  I+N+ LNFGPQHP                     AAHGVLRLVLELDGEV V L   ITRILNH + +G H +DVG
Sbjct:   41 EPEKKIQNYQLNFGPQHP---------------------AAHGVLRLVLELDGEVRVSLFGEITRILNHCMFLGTHALDVG 100          
BLAST of Gvermi7939.t1 vs. uniprot
Match: A0A5J4YS27_PORPP (NADH dehydrogenase ubiquinone iron-sulfur protein 2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YS27_PORPP)

HSP 1 Score: 73.6 bits (179), Expect = 2.680e-12
Identity = 56/170 (32.94%), Postives = 63/170 (37.06%), Query Frame = 0
Query:   48 VNAVAGDVHLDQLEPHELSRMRADREKQLDIRNFTLNFGPQHPKHNFNHSRTATCDASMSLLLKAAHGVLRLVLELDGEVAVKLDPHI----------------------------------------------------------------TRILNHLLAVGCHGMDVG 153
            V  +A +V    L  +E  R+ AD E Q  + +FTLNFGPQHP                     AAHGVLRLVLELDGEV  + DPHI                                                                TRILNHLLAV CH MDVG
Sbjct:   61 VQEIADEVAYSDLTEYEKQRITADIEAQKRVTHFTLNFGPQHP---------------------AAHGVLRLVLELDGEVVQRADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSMMAQEQCYSLAVEKLLKIEAPPRAKYIRTMFGEITRILNHLLAVPCHAMDVG 209          
BLAST of Gvermi7939.t1 vs. uniprot
Match: A0A1L8F4W0_XENLA (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial n=1 Tax=Xenopus laevis TaxID=8355 RepID=A0A1L8F4W0_XENLA)

HSP 1 Score: 67.8 bits (164), Expect = 2.270e-10
Identity = 39/98 (39.80%), Postives = 47/98 (47.96%), Query Frame = 0
Query:   75 QLDIRNFTLNFGPQHPKHNFNHSRTATCDASMSLLLKAAHGVLRLVLELDGEVAVKLDPHI-------------------TRILNHLLAVGCHGMDVG 153
            Q  + N T+NFGPQHP                     AAHGVLRLV+EL GE   + DPHI                   TRILNH++AV CH +D+G
Sbjct:   70 QKAVSNLTINFGPQHP---------------------AAHGVLRLVMELSGESVKRCDPHIGLLHRGTEKLIEYKTYLQITRILNHIMAVTCHALDIG 146          
BLAST of Gvermi7939.t1 vs. uniprot
Match: A0A1Q3VWR2_9PROT (NADH-quinone oxidoreductase subunit D n=1 Tax=Candidatus Accumulibacter sp. 66-26 TaxID=1895689 RepID=A0A1Q3VWR2_9PROT)

HSP 1 Score: 66.6 bits (161), Expect = 6.590e-10
Identity = 47/141 (33.33%), Postives = 53/141 (37.59%), Query Frame = 0
Query:   77 DIRNFTLNFGPQHPKHNFNHSRTATCDASMSLLLKAAHGVLRLVLELDGEVAVKLDPHI----------------------------------------------------------------TRILNHLLAVGCHGMDVG 153
            +IRNFTLNFGPQHP                     AAHGVLR+VLELDGEV ++ DPHI                                                                TRILNHLL +GCHG+DVG
Sbjct:    3 EIRNFTLNFGPQHP---------------------AAHGVLRMVLELDGEVVMRADPHIGLLHRGTEKLAEQKTWVQSVPYMDRLDYVSMMCNEHAYCLAIEKLLGIEVPVRAQYIRVMFDEITRILNHLLWIGCHGLDVG 122          
BLAST of Gvermi7939.t1 vs. uniprot
Match: C7RL79_ACCPU (NADH-quinone oxidoreductase subunit D n=18 Tax=Candidatus Accumulibacter TaxID=327159 RepID=C7RL79_ACCPU)

HSP 1 Score: 66.2 bits (160), Expect = 8.980e-10
Identity = 47/141 (33.33%), Postives = 53/141 (37.59%), Query Frame = 0
Query:   77 DIRNFTLNFGPQHPKHNFNHSRTATCDASMSLLLKAAHGVLRLVLELDGEVAVKLDPHI----------------------------------------------------------------TRILNHLLAVGCHGMDVG 153
            ++RNFTLNFGPQHP                     AAHGVLR+VLELDGEV ++ DPHI                                                                TRILNHLL VGCHG+DVG
Sbjct:    3 ELRNFTLNFGPQHP---------------------AAHGVLRMVLELDGEVVMRADPHIGLLHRATEKLAETKTWIQSVPYMDRLDYMSMMCNEHAYCMAIERLLQIEVPIRAQYIRVMFDEITRILNHLLWVGCHGLDVG 122          
The following BLAST results are available for this feature:
BLAST of Gvermi7939.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IGW2_9FLOR7.250e-3160.19Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
M1VCM1_CYAM15.740e-1850.00NADH dehydrogenase I iron-sulfur protein 49kDa sub... [more]
S0F2R8_CHOCR1.590e-1646.49NADH dehydrogenase subunit 7 n=1 Tax=Chondrus cris... [more]
A0A7S0XJI3_9RHOD7.130e-1533.53Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
M2XIL7_GALSU1.030e-1445.83NADH dehydrogenase (Ubiquinone) Fe-S protein 2 n=1... [more]
A0A5N5SJ53_9CRUS1.130e-1250.62Complex I-49kD (Fragment) n=1 Tax=Armadillidium na... [more]
A0A5J4YS27_PORPP2.680e-1232.94NADH dehydrogenase ubiquinone iron-sulfur protein ... [more]
A0A1L8F4W0_XENLA2.270e-1039.80NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A1Q3VWR2_9PROT6.590e-1033.33NADH-quinone oxidoreductase subunit D n=1 Tax=Cand... [more]
C7RL79_ACCPU8.980e-1033.33NADH-quinone oxidoreductase subunit D n=18 Tax=Can... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029014[NiFe]-hydrogenase, large subunitSUPERFAMILY56762HydB/Nqo4-likecoord: 112..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:230549..232609 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7939.t1Gvermi7939.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 230549..232609 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7939.t1 ID=Gvermi7939.t1|Name=Gvermi7939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=160bp
MLRAFSSRLASVSHASCSNVRALATRGGQLASVGSPQKLDPHYIDSAVNA
VAGDVHLDQLEPHELSRMRADREKQLDIRNFTLNFGPQHPKHNFNHSRTA
TCDASMSLLLKAAHGVLRLVLELDGEVAVKLDPHITRILNHLLAVGCHGM
DVGYSIVRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029014NiFe-Hase_large