Gvermi7991.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7991.t1
Unique Name	Gvermi7991.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	393

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:535864..537042 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707012.1
Preferred name	SLC35E3
PFAMs	TPT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06643,ko:K15283,ko:K15285
KEGG TC	2.A.7.9
KEGG Pathway	ko01522,ko01524,ko04068,ko04110,ko04115,ko04120,ko04144,ko04151,ko04218,ko04919,ko05165,ko05169,ko05200,ko05202,ko05203,ko05205,ko05206,ko05214,ko05215,ko05218,ko05219,ko05220,map01522,map01524,map04068,map04110,map04115,map04120,map04144,map04151,map04218,map04919,map05165,map05169,map05200,map05202,map05203,map05205,map05206,map05214,map05215,map05218,map05219,map05220
Evalue	1.02e-126
EggNOG OGs	KOG1441@1\|root,KOG1441@2759\|Eukaryota
EC	2.3.2.27
Description	carbohydrate transport
COG category	Z
BRITE	ko00000,ko00001,ko01000,ko02000,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7991	Gvermi7991	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 535864..537042 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7991.t1.start1	Gvermi7991.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 535864..535866 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7991.t1.CDS1	Gvermi7991.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 535864..537042 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7991.t1.exon1	Gvermi7991.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 535864..537042 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7991.t1.stop1	Gvermi7991.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 537040..537042 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7991.t1	Gvermi7991.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 535864..537042 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:535864..537042+
coding sequence from alignment at ScGOVlb_24226:535864..537042+

mRNA sequence

>Gvermi7991.t1 ID=Gvermi7991.t1|Name=Gvermi7991.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=393bp
MSAFVATSPAVGSPPASFASTCHHCIGRSRFPLSPLRGAYRHPPRPRPAS
SPLRASASGASDVSKPIPQSSAQPVQKKASRLRVGVYILLWYAFNIVYNI
SNKTVLNWFPVPWFVSWVQLLVGALYVLPIWTLRIRKAPVVPKDALSTLL
PVSVAHIIGHVSTVVSLGAVAVSFTHVVKSMEPFVNVVGSAFFLNSVFPF
PVYLSLLPVVAGVVMASVTEVSFTWLGFLSAMTSNFAFTARNIFSKLSMN
KPKGDNMGPANLFGVLSVMSTIILTPFALIIDHPAKLISAWKTATVGATA
VVTAPKLLLYLFISGLFFYLYQEVAFKALDSIHPITHAVANTVKRVVVIA
TTVLFFRNPVTRANIIGSSIALVGVLLYSITKNYFPEKKPSA*

spliced messenger RNA

>Gvermi7991.t1 ID=Gvermi7991.t1|Name=Gvermi7991.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at ScGOVlb_24226:535864..537042+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCTTTGTCGCCACTTCGCCTGCTGTGGGCTCCCCGCCCGCCTC
CTTCGCCTCTACCTGCCATCACTGCATCGGCCGCTCGCGCTTCCCGCTTT
CCCCTCTGCGTGGCGCATATCGCCATCCCCCACGCCCGCGCCCCGCTTCA
TCTCCCCTGCGCGCCAGCGCCTCCGGCGCTTCCGACGTCTCCAAGCCCAT
CCCACAGTCGTCTGCACAGCCTGTCCAAAAGAAAGCTAGCCGCTTGCGCG
TCGGCGTTTATATCCTTTTGTGGTATGCGTTCAACATCGTGTACAACATC
TCCAACAAGACCGTCCTCAACTGGTTCCCTGTACCATGGTTCGTCTCCTG
GGTCCAGCTGCTCGTCGGCGCGCTCTATGTGCTTCCGATCTGGACCCTGC
GCATCAGAAAGGCCCCCGTCGTCCCTAAAGACGCCCTCTCCACCCTGCTG
CCCGTGTCCGTTGCCCACATCATCGGCCACGTTTCCACCGTCGTGTCGCT
AGGCGCCGTCGCGGTATCCTTTACACACGTCGTCAAGAGCATGGAGCCTT
TCGTCAACGTCGTCGGATCAGCCTTCTTCCTAAACTCCGTCTTTCCGTTC
CCCGTCTATCTTTCGTTGCTGCCCGTTGTGGCCGGAGTTGTCATGGCCTC
CGTCACTGAGGTCTCGTTTACTTGGCTCGGTTTCCTGTCTGCGATGACAT
CCAACTTTGCCTTTACCGCTCGTAATATTTTTTCCAAGCTCTCAATGAAC
AAGCCCAAAGGCGACAATATGGGTCCCGCTAACTTGTTTGGAGTGCTTTC
CGTCATGTCAACTATCATCCTCACTCCGTTTGCCCTCATCATAGATCATC
CGGCAAAGCTCATTAGTGCTTGGAAGACCGCAACTGTGGGAGCCACTGCC
GTCGTCACGGCCCCCAAGTTGTTGCTCTACTTATTCATCTCTGGCTTGTT
CTTCTATCTCTACCAAGAAGTGGCGTTCAAGGCACTGGATTCTATACATC
CAATTACCCACGCCGTTGCAAACACCGTCAAGCGAGTAGTTGTTATCGCA
ACCACTGTCCTGTTCTTCAGAAACCCCGTCACCAGAGCCAACATCATCGG
TTCTTCAATTGCCCTAGTTGGCGTTCTTTTGTACTCGATTACGAAGAACT
ATTTTCCCGAGAAGAAACCAAGCGCGTGA

protein sequence of Gvermi7991.t1

>Gvermi7991.t1 ID=Gvermi7991.t1|Name=Gvermi7991.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=393bp
MSAFVATSPAVGSPPASFASTCHHCIGRSRFPLSPLRGAYRHPPRPRPAS
SPLRASASGASDVSKPIPQSSAQPVQKKASRLRVGVYILLWYAFNIVYNI
SNKTVLNWFPVPWFVSWVQLLVGALYVLPIWTLRIRKAPVVPKDALSTLL
PVSVAHIIGHVSTVVSLGAVAVSFTHVVKSMEPFVNVVGSAFFLNSVFPF
PVYLSLLPVVAGVVMASVTEVSFTWLGFLSAMTSNFAFTARNIFSKLSMN
KPKGDNMGPANLFGVLSVMSTIILTPFALIIDHPAKLISAWKTATVGATA
VVTAPKLLLYLFISGLFFYLYQEVAFKALDSIHPITHAVANTVKRVVVIA
TTVLFFRNPVTRANIIGSSIALVGVLLYSITKNYFPEKKPSA*

mRNA from alignment at ScGOVlb_24226:535864..537042+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7991.t1 ID=Gvermi7991.t1|Name=Gvermi7991.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at ScGOVlb_24226:535864..537042+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGCCTTTGTCGCCACTTCGCCTGCTGTGGGCTCCCCGCCCGCCTC
CTTCGCCTCTACCTGCCATCACTGCATCGGCCGCTCGCGCTTCCCGCTTT
CCCCTCTGCGTGGCGCATATCGCCATCCCCCACGCCCGCGCCCCGCTTCA
TCTCCCCTGCGCGCCAGCGCCTCCGGCGCTTCCGACGTCTCCAAGCCCAT
CCCACAGTCGTCTGCACAGCCTGTCCAAAAGAAAGCTAGCCGCTTGCGCG
TCGGCGTTTATATCCTTTTGTGGTATGCGTTCAACATCGTGTACAACATC
TCCAACAAGACCGTCCTCAACTGGTTCCCTGTACCATGGTTCGTCTCCTG
GGTCCAGCTGCTCGTCGGCGCGCTCTATGTGCTTCCGATCTGGACCCTGC
GCATCAGAAAGGCCCCCGTCGTCCCTAAAGACGCCCTCTCCACCCTGCTG
CCCGTGTCCGTTGCCCACATCATCGGCCACGTTTCCACCGTCGTGTCGCT
AGGCGCCGTCGCGGTATCCTTTACACACGTCGTCAAGAGCATGGAGCCTT
TCGTCAACGTCGTCGGATCAGCCTTCTTCCTAAACTCCGTCTTTCCGTTC
CCCGTCTATCTTTCGTTGCTGCCCGTTGTGGCCGGAGTTGTCATGGCCTC
CGTCACTGAGGTCTCGTTTACTTGGCTCGGTTTCCTGTCTGCGATGACAT
CCAACTTTGCCTTTACCGCTCGTAATATTTTTTCCAAGCTCTCAATGAAC
AAGCCCAAAGGCGACAATATGGGTCCCGCTAACTTGTTTGGAGTGCTTTC
CGTCATGTCAACTATCATCCTCACTCCGTTTGCCCTCATCATAGATCATC
CGGCAAAGCTCATTAGTGCTTGGAAGACCGCAACTGTGGGAGCCACTGCC
GTCGTCACGGCCCCCAAGTTGTTGCTCTACTTATTCATCTCTGGCTTGTT
CTTCTATCTCTACCAAGAAGTGGCGTTCAAGGCACTGGATTCTATACATC
CAATTACCCACGCCGTTGCAAACACCGTCAAGCGAGTAGTTGTTATCGCA
ACCACTGTCCTGTTCTTCAGAAACCCCGTCACCAGAGCCAACATCATCGG
TTCTTCAATTGCCCTAGTTGGCGTTCTTTTGTACTCGATTACGAAGAACT
ATTTTCCCGAGAAGAAACCAAGCGCGTGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:535864..537042+

>Gvermi7991.t1 ID=Gvermi7991.t1|Name=Gvermi7991.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1179bp|location=Sequence derived from alignment at ScGOVlb_24226:535864..537042+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGCCTTTGTCGCCACTTCGCCTGCTGTGGGCTCCCCGCCCGCCTC
CTTCGCCTCTACCTGCCATCACTGCATCGGCCGCTCGCGCTTCCCGCTTT
CCCCTCTGCGTGGCGCATATCGCCATCCCCCACGCCCGCGCCCCGCTTCA
TCTCCCCTGCGCGCCAGCGCCTCCGGCGCTTCCGACGTCTCCAAGCCCAT
CCCACAGTCGTCTGCACAGCCTGTCCAAAAGAAAGCTAGCCGCTTGCGCG
TCGGCGTTTATATCCTTTTGTGGTATGCGTTCAACATCGTGTACAACATC
TCCAACAAGACCGTCCTCAACTGGTTCCCTGTACCATGGTTCGTCTCCTG
GGTCCAGCTGCTCGTCGGCGCGCTCTATGTGCTTCCGATCTGGACCCTGC
GCATCAGAAAGGCCCCCGTCGTCCCTAAAGACGCCCTCTCCACCCTGCTG
CCCGTGTCCGTTGCCCACATCATCGGCCACGTTTCCACCGTCGTGTCGCT
AGGCGCCGTCGCGGTATCCTTTACACACGTCGTCAAGAGCATGGAGCCTT
TCGTCAACGTCGTCGGATCAGCCTTCTTCCTAAACTCCGTCTTTCCGTTC
CCCGTCTATCTTTCGTTGCTGCCCGTTGTGGCCGGAGTTGTCATGGCCTC
CGTCACTGAGGTCTCGTTTACTTGGCTCGGTTTCCTGTCTGCGATGACAT
CCAACTTTGCCTTTACCGCTCGTAATATTTTTTCCAAGCTCTCAATGAAC
AAGCCCAAAGGCGACAATATGGGTCCCGCTAACTTGTTTGGAGTGCTTTC
CGTCATGTCAACTATCATCCTCACTCCGTTTGCCCTCATCATAGATCATC
CGGCAAAGCTCATTAGTGCTTGGAAGACCGCAACTGTGGGAGCCACTGCC
GTCGTCACGGCCCCCAAGTTGTTGCTCTACTTATTCATCTCTGGCTTGTT
CTTCTATCTCTACCAAGAAGTGGCGTTCAAGGCACTGGATTCTATACATC
CAATTACCCACGCCGTTGCAAACACCGTCAAGCGAGTAGTTGTTATCGCA
ACCACTGTCCTGTTCTTCAGAAACCCCGTCACCAGAGCCAACATCATCGG
TTCTTCAATTGCCCTAGTTGGCGTTCTTTTGTACTCGATTACGAAGAACT
ATTTTCCCGAGAAGAAACCAAGCGCGTGA