Gvermi8076.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8076.t1
Unique NameGvermi8076.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:937436..938428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog59894.ENSFALP00000002232
Preferred nameNSMCE4A
PFAMsNse4-Nse3_bdg,Nse4_C
Max annot lvl33208|Metazoa
GOsGO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016604,GO:0030915,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0106068,GO:1901360,GO:1902494,GO:1990234,GO:2001020,GO:2001022
Evalue1.54e-18
EggNOG OGsCOG5125@1|root,KOG2866@2759|Eukaryota,39GJI@33154|Opisthokonta,3BF2I@33208|Metazoa,3CYZH@33213|Bilateria,484ZN@7711|Chordata,48X5M@7742|Vertebrata,4GU7S@8782|Aves
DescriptionNon-structural maintenance of chromosomes element 4 homolog A
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8076Gvermi8076Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 937436..938428 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8076.t1.stop1Gvermi8076.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 937436..937438 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8076.t1.CDS1Gvermi8076.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 937436..938428 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8076.t1.exon1Gvermi8076.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 937436..938428 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8076.t1.start1Gvermi8076.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 938426..938428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8076.t1Gvermi8076.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 937436..938428 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8076.t1 ID=Gvermi8076.t1|Name=Gvermi8076.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=331bp
MSQINQEAMENRRKATIILKELREHQQQVEADKEEATDLRSETLKEHFEK
AAQNLEKAKTADQALVDAQIFHKLGVYSKRQAEQLQTGLRTYDIKTFTDN
LIAKLRRANADKYGEEEEHSQNVSVNFLDIGRSVFDRWKTVHFQDAHFGN
APKEEVRKVRERKKSDRIKQGGPTAKPNELRPTDMEETETDKQVAEMKRE
LQRRKRCNFWLFVIDPNSFPRSVENVFHSSFLVKEKFAALDLKSEGEPTI
RYVDPMADEMDNNKEQNGAGEEIGNSQFIMGFDRNQWQELIRKHNIQKCL
FPPKNKLFEDEQLRQLQEYEREKELDSATF*
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spliced messenger RNA

>Gvermi8076.t1 ID=Gvermi8076.t1|Name=Gvermi8076.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=993bp|location=Sequence derived from alignment at ScGOVlb_24226:937436..938428- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCAAATCAACCAAGAGGCGATGGAAAACAGAAGGAAGGCGACTAT
TATTCTCAAGGAACTTCGCGAGCATCAACAACAGGTCGAAGCGGACAAGG
AGGAAGCCACCGACCTCCGTTCCGAAACCCTCAAGGAGCATTTTGAAAAG
GCCGCGCAGAATCTGGAAAAAGCAAAAACAGCCGATCAAGCGCTGGTAGA
CGCACAGATTTTCCACAAGCTTGGAGTATACTCCAAACGTCAAGCCGAGC
AGCTGCAAACCGGTTTGCGGACGTATGACATCAAGACGTTTACTGACAAT
CTCATTGCAAAGTTGCGTCGGGCGAATGCTGATAAATACGGGGAAGAGGA
GGAACACAGTCAAAACGTTTCGGTGAACTTTTTGGATATTGGGCGAAGTG
TGTTCGACAGATGGAAGACGGTGCACTTCCAGGACGCACACTTCGGAAAC
GCTCCAAAAGAGGAGGTTAGGAAAGTCCGAGAGCGAAAGAAGTCAGACAG
AATTAAGCAGGGCGGCCCTACAGCGAAGCCAAATGAGCTGCGACCTACCG
ACATGGAAGAAACTGAAACAGATAAGCAAGTAGCAGAAATGAAACGAGAA
TTGCAACGGAGAAAGCGCTGCAACTTCTGGCTGTTTGTCATCGATCCAAA
CAGTTTCCCTCGGTCCGTTGAGAATGTTTTCCATTCGTCCTTCCTCGTGA
AGGAGAAGTTTGCCGCTCTTGATCTAAAGAGTGAGGGTGAGCCCACGATT
CGATACGTAGACCCGATGGCTGACGAAATGGATAATAACAAAGAACAAAA
TGGCGCTGGTGAGGAGATCGGTAATTCACAGTTCATCATGGGTTTCGATA
GAAATCAATGGCAAGAATTGATTCGCAAACACAACATTCAAAAGTGCCTT
TTCCCCCCGAAAAACAAATTGTTCGAGGATGAACAGCTTCGACAACTGCA
AGAGTATGAACGGGAGAAAGAATTGGATTCTGCAACGTTTTGA
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protein sequence of Gvermi8076.t1

>Gvermi8076.t1 ID=Gvermi8076.t1|Name=Gvermi8076.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=331bp
MSQINQEAMENRRKATIILKELREHQQQVEADKEEATDLRSETLKEHFEK
AAQNLEKAKTADQALVDAQIFHKLGVYSKRQAEQLQTGLRTYDIKTFTDN
LIAKLRRANADKYGEEEEHSQNVSVNFLDIGRSVFDRWKTVHFQDAHFGN
APKEEVRKVRERKKSDRIKQGGPTAKPNELRPTDMEETETDKQVAEMKRE
LQRRKRCNFWLFVIDPNSFPRSVENVFHSSFLVKEKFAALDLKSEGEPTI
RYVDPMADEMDNNKEQNGAGEEIGNSQFIMGFDRNQWQELIRKHNIQKCL
FPPKNKLFEDEQLRQLQEYEREKELDSATF*
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mRNA from alignment at ScGOVlb_24226:937436..938428-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8076.t1 ID=Gvermi8076.t1|Name=Gvermi8076.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=993bp|location=Sequence derived from alignment at ScGOVlb_24226:937436..938428- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCAAATCAACCAAGAGGCGATGGAAAACAGAAGGAAGGCGACTAT
TATTCTCAAGGAACTTCGCGAGCATCAACAACAGGTCGAAGCGGACAAGG
AGGAAGCCACCGACCTCCGTTCCGAAACCCTCAAGGAGCATTTTGAAAAG
GCCGCGCAGAATCTGGAAAAAGCAAAAACAGCCGATCAAGCGCTGGTAGA
CGCACAGATTTTCCACAAGCTTGGAGTATACTCCAAACGTCAAGCCGAGC
AGCTGCAAACCGGTTTGCGGACGTATGACATCAAGACGTTTACTGACAAT
CTCATTGCAAAGTTGCGTCGGGCGAATGCTGATAAATACGGGGAAGAGGA
GGAACACAGTCAAAACGTTTCGGTGAACTTTTTGGATATTGGGCGAAGTG
TGTTCGACAGATGGAAGACGGTGCACTTCCAGGACGCACACTTCGGAAAC
GCTCCAAAAGAGGAGGTTAGGAAAGTCCGAGAGCGAAAGAAGTCAGACAG
AATTAAGCAGGGCGGCCCTACAGCGAAGCCAAATGAGCTGCGACCTACCG
ACATGGAAGAAACTGAAACAGATAAGCAAGTAGCAGAAATGAAACGAGAA
TTGCAACGGAGAAAGCGCTGCAACTTCTGGCTGTTTGTCATCGATCCAAA
CAGTTTCCCTCGGTCCGTTGAGAATGTTTTCCATTCGTCCTTCCTCGTGA
AGGAGAAGTTTGCCGCTCTTGATCTAAAGAGTGAGGGTGAGCCCACGATT
CGATACGTAGACCCGATGGCTGACGAAATGGATAATAACAAAGAACAAAA
TGGCGCTGGTGAGGAGATCGGTAATTCACAGTTCATCATGGGTTTCGATA
GAAATCAATGGCAAGAATTGATTCGCAAACACAACATTCAAAAGTGCCTT
TTCCCCCCGAAAAACAAATTGTTCGAGGATGAACAGCTTCGACAACTGCA
AGAGTATGAACGGGAGAAAGAATTGGATTCTGCAACGTTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:937436..938428-

>Gvermi8076.t1 ID=Gvermi8076.t1|Name=Gvermi8076.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=993bp|location=Sequence derived from alignment at ScGOVlb_24226:937436..938428- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCAAATCAACCAAGAGGCGATGGAAAACAGAAGGAAGGCGACTAT
TATTCTCAAGGAACTTCGCGAGCATCAACAACAGGTCGAAGCGGACAAGG
AGGAAGCCACCGACCTCCGTTCCGAAACCCTCAAGGAGCATTTTGAAAAG
GCCGCGCAGAATCTGGAAAAAGCAAAAACAGCCGATCAAGCGCTGGTAGA
CGCACAGATTTTCCACAAGCTTGGAGTATACTCCAAACGTCAAGCCGAGC
AGCTGCAAACCGGTTTGCGGACGTATGACATCAAGACGTTTACTGACAAT
CTCATTGCAAAGTTGCGTCGGGCGAATGCTGATAAATACGGGGAAGAGGA
GGAACACAGTCAAAACGTTTCGGTGAACTTTTTGGATATTGGGCGAAGTG
TGTTCGACAGATGGAAGACGGTGCACTTCCAGGACGCACACTTCGGAAAC
GCTCCAAAAGAGGAGGTTAGGAAAGTCCGAGAGCGAAAGAAGTCAGACAG
AATTAAGCAGGGCGGCCCTACAGCGAAGCCAAATGAGCTGCGACCTACCG
ACATGGAAGAAACTGAAACAGATAAGCAAGTAGCAGAAATGAAACGAGAA
TTGCAACGGAGAAAGCGCTGCAACTTCTGGCTGTTTGTCATCGATCCAAA
CAGTTTCCCTCGGTCCGTTGAGAATGTTTTCCATTCGTCCTTCCTCGTGA
AGGAGAAGTTTGCCGCTCTTGATCTAAAGAGTGAGGGTGAGCCCACGATT
CGATACGTAGACCCGATGGCTGACGAAATGGATAATAACAAAGAACAAAA
TGGCGCTGGTGAGGAGATCGGTAATTCACAGTTCATCATGGGTTTCGATA
GAAATCAATGGCAAGAATTGATTCGCAAACACAACATTCAAAAGTGCCTT
TTCCCCCCGAAAAACAAATTGTTCGAGGATGAACAGCTTCGACAACTGCA
AGAGTATGAACGGGAGAAAGAATTGGATTCTGCAACGTTTTGA
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