Gvermi7943.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7943.t1
Unique NameGvermi7943.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:238569..239323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004344975.1
Preferred nameCPR2
PFAMsPro_isomerase
Max annot lvl33154|Opisthokonta
KEGG koko:K01802,ko:K03768,ko:K03770
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564
Evalue6.02e-83
EggNOG OGsCOG0652@1|root,KOG0880@2759|Eukaryota,38FKT@33154|Opisthokonta
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
BRITEko00000,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7943Gvermi7943Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 238569..239323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7943.t1Gvermi7943.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 238569..239323 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7943.t1.start1Gvermi7943.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 238569..238571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7943.t1.CDS1Gvermi7943.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 238569..238916 +
Gvermi7943.t1.CDS2Gvermi7943.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 239015..239323 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7943.t1.exon1Gvermi7943.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 238569..238916 +
Gvermi7943.t1.exon2Gvermi7943.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 239015..239323 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7943.t1.intron1Gvermi7943.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 238917..239014 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7943.t1.stop1Gvermi7943.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 239321..239323 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7943.t1 ID=Gvermi7943.t1|Name=Gvermi7943.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=219bp
MAAFVPSTFRFAVSSTAAQAARCTFRGSFVHHRASRSARFDAVSRNVTSM
ATPAVTNKVFFDVEIDGKSEGRIEFALFGEQVPKTVENFRALCTGEKGFG
YKGSAFHRVIDEFMLQGGDFTRGDGTGGKSIYGDRFDDEAFVIPHSTPGL
LSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGQVIGGLDVVKTIEKQST
DNFDRPQKKVVISDCGEL*
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spliced messenger RNA

>Gvermi7943.t1 ID=Gvermi7943.t1|Name=Gvermi7943.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=657bp|location=Sequence derived from alignment at ScGOVlb_24226:238569..239323+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCATTCGTTCCATCCACCTTTCGCTTTGCCGTCAGTTCAACCGC
CGCACAAGCAGCGCGATGCACCTTTCGCGGCAGCTTTGTGCACCATCGCG
CATCGCGCTCCGCCCGATTCGATGCTGTCAGTCGCAATGTAACTTCAATG
GCGACCCCGGCCGTCACGAACAAGGTTTTTTTTGACGTCGAAATCGACGG
CAAGAGCGAGGGCCGCATTGAATTCGCCTTGTTCGGAGAGCAGGTTCCGA
AGACAGTCGAAAACTTCCGCGCACTGTGCACCGGTGAGAAGGGATTTGGC
TACAAAGGAAGCGCCTTTCATCGCGTGATTGACGAGTTTATGCTGCAGGG
AGGTGACTTTACTAGAGGTGACGGTACTGGTGGAAAGTCAATCTACGGCG
ATCGTTTTGACGATGAAGCGTTTGTGATCCCTCACTCCACCCCCGGATTG
CTCTCCATGGCAAACGCGGGTCCGAATACAAATGGATCACAGTTCTTCAT
TACGACCGTACCGTGTCCATGGTTGGATGGTAAACACGTCGTATTCGGCC
AGGTGATCGGCGGCTTAGACGTGGTGAAGACGATTGAAAAGCAATCTACG
GATAACTTTGACAGGCCTCAGAAAAAGGTCGTGATTTCTGACTGTGGTGA
ACTGTGA
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protein sequence of Gvermi7943.t1

>Gvermi7943.t1 ID=Gvermi7943.t1|Name=Gvermi7943.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=219bp
MAAFVPSTFRFAVSSTAAQAARCTFRGSFVHHRASRSARFDAVSRNVTSM
ATPAVTNKVFFDVEIDGKSEGRIEFALFGEQVPKTVENFRALCTGEKGFG
YKGSAFHRVIDEFMLQGGDFTRGDGTGGKSIYGDRFDDEAFVIPHSTPGL
LSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGQVIGGLDVVKTIEKQST
DNFDRPQKKVVISDCGEL*
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mRNA from alignment at ScGOVlb_24226:238569..239323+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7943.t1 ID=Gvermi7943.t1|Name=Gvermi7943.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=755bp|location=Sequence derived from alignment at ScGOVlb_24226:238569..239323+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCATTCGTTCCATCCACCTTTCGCTTTGCCGTCAGTTCAACCGC
CGCACAAGCAGCGCGATGCACCTTTCGCGGCAGCTTTGTGCACCATCGCG
CATCGCGCTCCGCCCGATTCGATGCTGTCAGTCGCAATGTAACTTCAATG
GCGACCCCGGCCGTCACGAACAAGGTTTTTTTTGACGTCGAAATCGACGG
CAAGAGCGAGGGCCGCATTGAATTCGCCTTGTTCGGAGAGCAGGTTCCGA
AGACAGTCGAAAACTTCCGCGCACTGTGCACCGGTGAGAAGGGATTTGGC
TACAAAGGAAGCGCCTTTCATCGCGTGATTGACGAGTTTATGCTGCAGGT
ACGTGCGCGCAGTTTAGCCGTTCAACCATTGCCTTCTGTGCGCCTGGTCG
CTGACTTTACTTCTGTGTGACGCGTTTTCGTTTTGCTTGCGCGTAGGGAG
GTGACTTTACTAGAGGTGACGGTACTGGTGGAAAGTCAATCTACGGCGAT
CGTTTTGACGATGAAGCGTTTGTGATCCCTCACTCCACCCCCGGATTGCT
CTCCATGGCAAACGCGGGTCCGAATACAAATGGATCACAGTTCTTCATTA
CGACCGTACCGTGTCCATGGTTGGATGGTAAACACGTCGTATTCGGCCAG
GTGATCGGCGGCTTAGACGTGGTGAAGACGATTGAAAAGCAATCTACGGA
TAACTTTGACAGGCCTCAGAAAAAGGTCGTGATTTCTGACTGTGGTGAAC
TGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:238569..239323+

>Gvermi7943.t1 ID=Gvermi7943.t1|Name=Gvermi7943.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=657bp|location=Sequence derived from alignment at ScGOVlb_24226:238569..239323+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCATTCGTTCCATCCACCTTTCGCTTTGCCGTCAGTTCAACCGC
CGCACAAGCAGCGCGATGCACCTTTCGCGGCAGCTTTGTGCACCATCGCG
CATCGCGCTCCGCCCGATTCGATGCTGTCAGTCGCAATGTAACTTCAATG
GCGACCCCGGCCGTCACGAACAAGGTTTTTTTTGACGTCGAAATCGACGG
CAAGAGCGAGGGCCGCATTGAATTCGCCTTGTTCGGAGAGCAGGTTCCGA
AGACAGTCGAAAACTTCCGCGCACTGTGCACCGGTGAGAAGGGATTTGGC
TACAAAGGAAGCGCCTTTCATCGCGTGATTGACGAGTTTATGCTGCAGGG
AGGTGACTTTACTAGAGGTGACGGTACTGGTGGAAAGTCAATCTACGGCG
ATCGTTTTGACGATGAAGCGTTTGTGATCCCTCACTCCACCCCCGGATTG
CTCTCCATGGCAAACGCGGGTCCGAATACAAATGGATCACAGTTCTTCAT
TACGACCGTACCGTGTCCATGGTTGGATGGTAAACACGTCGTATTCGGCC
AGGTGATCGGCGGCTTAGACGTGGTGAAGACGATTGAAAAGCAATCTACG
GATAACTTTGACAGGCCTCAGAAAAAGGTCGTGATTTCTGACTGTGGTGA
ACTGTGA
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