Gvermi7947.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7947.t1
Unique NameGvermi7947.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length275
Homology
BLAST of Gvermi7947.t1 vs. uniprot
Match: A0A2V3IGM8_9FLOR (40S ribosomal protein S28 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGM8_9FLOR)

HSP 1 Score: 125 bits (315), Expect = 1.760e-32
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0
Query:    1 MDQPVKIAKVSKIIGRTGSRGGITQVRVEFLDDQNRSIIRNVKGPVREGDLLALLESEREARRFS 65
            MDQPVK+AKVSKIIGRTGSRGGITQVRVEFLDDQNRSIIRNVKGPVREGDLLALLESEREARRFS
Sbjct:   43 MDQPVKLAKVSKIIGRTGSRGGITQVRVEFLDDQNRSIIRNVKGPVREGDLLALLESEREARRFS 107          
BLAST of Gvermi7947.t1 vs. uniprot
Match: R7QI22_CHOCR (40S ribosomal protein S28 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QI22_CHOCR)

HSP 1 Score: 120 bits (301), Expect = 1.810e-31
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0
Query:    1 MDQPVKIAKVSKIIGRTGSRGGITQVRVEFLDDQNRSIIRNVKGPVREGDLLALLESEREARRF 64
            MDQPVK+ KVSKIIGRTGSRGGITQVRVEFLDD NRSIIRNVKGPVREGDLLALLESEREARRF
Sbjct:    1 MDQPVKLGKVSKIIGRTGSRGGITQVRVEFLDDANRSIIRNVKGPVREGDLLALLESEREARRF 64          
BLAST of Gvermi7947.t1 vs. uniprot
Match: A0A3P6TB85_LITSI (Histone domain-containing protein n=2 Tax=Bilateria TaxID=33213 RepID=A0A3P6TB85_LITSI)

HSP 1 Score: 120 bits (302), Expect = 1.970e-30
Identity = 73/140 (52.14%), Postives = 87/140 (62.14%), Query Frame = 0
Query:  131 VSCARPVHNPQQLSQNWRSQTSASDPSAQIARAKPQAMENTLKGRSAAPAPSTAGRAGMKKPNRTRPGTVALREIQKYQNNTALLVPKLLLQRLTREIAQDFREELGFREAAVRALQESSEAYLTGLFEDANLCAIHGLR 270
            V CA PV    +  Q  R  T    P  Q+A         T   R +APA       G+KKP+R RPGTVALREI++YQ +T LL+ KL  QRL REIAQDF+ +L F+ +AV ALQE+SEAYL GLFED NLCAIH  R
Sbjct:   15 VLCADPVFLMARTKQTARKSTGGKAPRKQLA---------TKAARKSAPATG-----GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKR 140          
BLAST of Gvermi7947.t1 vs. uniprot
Match: A0A453KP36_AEGTS (Histone domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453KP36_AEGTS)

HSP 1 Score: 120 bits (302), Expect = 2.030e-30
Identity = 72/143 (50.35%), Postives = 95/143 (66.43%), Query Frame = 0
Query:  136 PVHNPQQLSQNWRSQTSASDPSAQIARAKPQAMENT--------LKGRSAAPAPSTAGRAGMKKPNRTRPGTVALREIQKYQNNTALLVPKLLLQRLTREIAQDFREELGFREAAVRALQESSEAYLTGLFEDANLCAIHGLR 270
            P H+ Q  + + RS  + + PS+ +AR K  A ++T        L  ++A  +    G  G+KKP+R RPGTVALREI+KYQ +T LL+ KL  QRL REIAQDF+ +L F+ +AV ALQE++EAYL GLFED NLCAIH  R
Sbjct:    1 PSHSTQTQTPHRRSTHTLTHPSSPMARTKQTARKSTGGKAPRKQLATKAARKSAPATG--GVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKR 141          
BLAST of Gvermi7947.t1 vs. uniprot
Match: A0A545A8F9_9PEZI (Histone domain-containing protein n=1 Tax=Golovinomyces magnicellulatus TaxID=62714 RepID=A0A545A8F9_9PEZI)

HSP 1 Score: 121 bits (303), Expect = 5.260e-30
Identity = 74/151 (49.01%), Postives = 93/151 (61.59%), Query Frame = 0
Query:  122 PIRIRWSRIVSCARPVHN--PQQLSQNWRSQTSASDPSAQIARAKPQAMENTLKGRSAAPAPSTAGRAGMKKPNRTRPGTVALREIQKYQNNTALLVPKLLLQRLTREIAQDFREELGFREAAVRALQESSEAYLTGLFEDANLCAIHGLR 270
            P+ +R  + V  +RP H+    +  Q  R  T    P  Q+A         T   R +APA       G+KKP+R RPGTVALREI++YQ +T LL+ KL  QRL REIAQDF+ +L F+ +AV ALQE+SEAYL GLFED NLCAIH  R
Sbjct:   52 PLPLRGHQFVVVSRPEHSIAMARTKQTARKSTGGKAPRKQLA---------TKAARKSAPATG-----GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 188          
BLAST of Gvermi7947.t1 vs. uniprot
Match: A0A091MHD1_9PASS (Histone H3 n=5 Tax=Amniota TaxID=32524 RepID=A0A091MHD1_9PASS)

HSP 1 Score: 119 bits (297), Expect = 5.630e-30
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 0
Query:  180 APSTAGRAGMKKPNRTRPGTVALREIQKYQNNTALLVPKLLLQRLTREIAQDFREELGFREAAVRALQESSEAYLTGLFEDANLCAIHGLR 270
            APST G   +KKP+R RPGTVALREI++YQ +T LL+PKL  QRL REIAQDF+ +L F+ AA+ ALQE+SEAYL GLFED NLCAIH  R
Sbjct:   30 APSTGG---VKKPHRYRPGTVALREIRRYQKSTELLIPKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKR 117          
BLAST of Gvermi7947.t1 vs. uniprot
Match: UPI00174E2E6C (histone H3-like n=1 Tax=Bactrocera oleae TaxID=104688 RepID=UPI00174E2E6C)

HSP 1 Score: 118 bits (295), Expect = 7.410e-30
Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = 0
Query:  180 APSTAGRAGMKKPNRTRPGTVALREIQKYQNNTALLVPKLLLQRLTREIAQDFREELGFREAAVRALQESSEAYLTGLFEDANLCAIHGLRE 271
            AP+T G   +KKP+R RPGTVALREI++YQ +T LL+ KL  QRL REIAQDF+ +L F+ +AV ALQE+SEAYL GLFED NLCAIH LRE
Sbjct:   30 APATGG---VKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHALRE 118          
BLAST of Gvermi7947.t1 vs. uniprot
Match: A0A0A0LZM9_CUCSA (Histone domain-containing protein n=1 Tax=Cucumis sativus TaxID=3659 RepID=A0A0A0LZM9_CUCSA)

HSP 1 Score: 119 bits (298), Expect = 1.090e-29
Identity = 73/140 (52.14%), Postives = 92/140 (65.71%), Query Frame = 0
Query:  139 NPQQLSQNWRSQTSASDPSAQIARAKPQAMENT--------LKGRSAAPAPSTAGRAGMKKPNRTRPGTVALREIQKYQNNTALLVPKLLLQRLTREIAQDFREELGFREAAVRALQESSEAYLTGLFEDANLCAIHGLR 270
            N  Q S N RS    S+  +Q+AR K  A ++T        L  ++A  +    G  G+KKP+R RPGTVALREI+KYQ +T LL+ KL  QRL REIAQDF+ +L F+ +AV ALQE++EAYL GLFED NLCAIH  R
Sbjct:   15 NNNQTSSNPRSPKFPSESLSQMARTKQTARKSTGGKAPRKQLATKAARKSAPATG--GVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKR 152          
BLAST of Gvermi7947.t1 vs. uniprot
Match: UPI0010A1D097 (histone H3.3A-like n=1 Tax=Peromyscus leucopus TaxID=10041 RepID=UPI0010A1D097)

HSP 1 Score: 120 bits (300), Expect = 1.120e-29
Identity = 70/135 (51.85%), Postives = 84/135 (62.22%), Query Frame = 0
Query:  137 VHNPQQLSQNWRSQTSASDPSAQIARAKPQAMENTLKGRSAAPAPSTAGRAGMKKPNRTRPGTVALREIQKYQNNTALLVPKLLLQRLTREIAQDFREELGFREAAVRALQESSEAYLTGLFEDANLCAIHGLRE 271
             H      Q  R+ T    P  Q+A         T   R +AP+P      G+KKP R RPGTVALREI++YQ +T LL+ KL  QRL REIAQDF+ +L F+ AA+ ALQE+SEAYL GLFED NLCAIH  RE
Sbjct:   70 AHTTAPTKQTARTSTGGKAPRKQLA---------TKAARKSAPSPG-----GVKKPRRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRE 190          
BLAST of Gvermi7947.t1 vs. uniprot
Match: A3QQG9_9CHEL (Histone H3 (Fragment) n=4 Tax=Protostomia TaxID=33317 RepID=A3QQG9_9CHEL)

HSP 1 Score: 117 bits (292), Expect = 1.410e-29
Identity = 61/91 (67.03%), Postives = 73/91 (80.22%), Query Frame = 0
Query:  180 APSTAGRAGMKKPNRTRPGTVALREIQKYQNNTALLVPKLLLQRLTREIAQDFREELGFREAAVRALQESSEAYLTGLFEDANLCAIHGLR 270
            AP+T G   +KKP+R RPGTVALREI++YQ +T LL+ KL  QRL REIAQDF+ +LGF+ +AV ALQE+SEAYL GLFED NLCAIH  R
Sbjct:   22 APATGG---VKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLGFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 109          
The following BLAST results are available for this feature:
BLAST of Gvermi7947.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IGM8_9FLOR1.760e-3298.4640S ribosomal protein S28 n=1 Tax=Gracilariopsis c... [more]
R7QI22_CHOCR1.810e-3195.3140S ribosomal protein S28 n=1 Tax=Chondrus crispus... [more]
A0A3P6TB85_LITSI1.970e-3052.14Histone domain-containing protein n=2 Tax=Bilateri... [more]
A0A453KP36_AEGTS2.030e-3050.35Histone domain-containing protein n=2 Tax=Aegilops... [more]
A0A545A8F9_9PEZI5.260e-3049.01Histone domain-containing protein n=1 Tax=Golovino... [more]
A0A091MHD1_9PASS5.630e-3068.13Histone H3 n=5 Tax=Amniota TaxID=32524 RepID=A0A09... [more]
UPI00174E2E6C7.410e-3067.39histone H3-like n=1 Tax=Bactrocera oleae TaxID=104... [more]
A0A0A0LZM9_CUCSA1.090e-2952.14Histone domain-containing protein n=1 Tax=Cucumis ... [more]
UPI0010A1D0971.120e-2951.85histone H3.3A-like n=1 Tax=Peromyscus leucopus Tax... [more]
A3QQG9_9CHEL1.410e-2967.03Histone H3 (Fragment) n=4 Tax=Protostomia TaxID=33... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000164Histone H3/CENP-APRINTSPR00622HISTONEH3coord: 251..267
score: 85.17
coord: 142..156
score: 26.38
IPR000164Histone H3/CENP-ASMARTSM00428h35coord: 187..271
e-value: 6.6E-24
score: 95.4
IPR000164Histone H3/CENP-APANTHERPTHR11426HISTONE H3coord: 174..270
NoneNo IPR availableGENE3D2.40.50.140coord: 1..64
e-value: 7.0E-34
score: 117.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..195
NoneNo IPR availablePANTHERPTHR11426:SF198SUBFAMILY NOT NAMEDcoord: 174..270
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 3..63
e-value: 2.6E-29
score: 101.0
IPR000289Ribosomal protein S28eHAMAPMF_00292Ribosomal_S28ecoord: 1..65
score: 19.939436
IPR000289Ribosomal protein S28eCDDcd04457S1_S28Ecoord: 6..63
e-value: 1.847E-32
score: 111.958
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 143..272
e-value: 2.1E-34
score: 120.3
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 174..268
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 171..268
e-value: 1.6E-24
score: 86.7
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:279325..281426 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7947.t1Gvermi7947.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 279325..281426 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7947.t1 ID=Gvermi7947.t1|Name=Gvermi7947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=275bp
MDQPVKIAKVSKIIGRTGSRGGITQVRVEFLDDQNRSIIRNVKGPVREGD
LLALLESEREARRFSYEEADILNDLPTSSSNILPKRPGRGAQKHSTISGP
SLAIVVPRWWSQQHFDFGSLYPIRIRWSRIVSCARPVHNPQQLSQNWRSQ
TSASDPSAQIARAKPQAMENTLKGRSAAPAPSTAGRAGMKKPNRTRPGTV
ALREIQKYQNNTALLVPKLLLQRLTREIAQDFREELGFREAAVRALQESS
EAYLTGLFEDANLCAIHGLREEYP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000164Histone_H3/CENP-A
IPR000289Ribosomal_S28e
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3
IPR012340NA-bd_OB-fold