Gvermi8035.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8035.t1
Unique NameGvermi8035.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length486
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:771571..773028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8035Gvermi8035Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 771571..773028 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8035.t1.stop1Gvermi8035.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 771571..771573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8035.t1.CDS1Gvermi8035.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 771571..773028 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8035.t1.exon1Gvermi8035.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 771571..773028 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8035.t1.start1Gvermi8035.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 773026..773028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8035.t1Gvermi8035.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 771571..773028 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8035.t1 ID=Gvermi8035.t1|Name=Gvermi8035.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=486bp
MAPPRKRPRIQPVSAKRPPAPPRQSRSRPSLHDDASRPRTLVDLLRPNAS
RAEQVLGDDAPNDAWSVLANTVDNLPSHATQHPPVHDSHPDAAVDLHQTQ
HQQLPVDLSIKTSLNITSSKSLWWTRVRGQAEEYEALHDLLSGVDTLAAA
NVVRPPLGSDAVVEAQVLTDTLTSAKRQFYRALLHFRYPCTTLPPVISRR
WQTVFASSARTRPDSALQEAANVAMERLHLWQSALQSLFFGYKRGHIDHF
YILLPSTTLLFSHAAAHSATSVPKRPAHVPSPSDSPLRACFANGSLGLRS
LLSDYAVPFRLLHPPNASEAHSEPPVIAEGRVAVQAVYNFVMSVGHKISN
AADVPVLLCDKPFRGGTAITANVTDADEANVINSAGGATKLTYSVKINGF
LTPRQVRAVCKALVDTQDRDFSVQMITEARSQMLNVCDQSISLLSADGPT
SSQQTTSCPIQGRVLSRVTRQTASPNFVLFTRAIE*
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spliced messenger RNA

>Gvermi8035.t1 ID=Gvermi8035.t1|Name=Gvermi8035.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at ScGOVlb_24226:771571..773028- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGCCGCGAAAACGACCGCGTATTCAACCCGTGAGCGCCAAGCG
CCCGCCCGCCCCCCCGCGTCAGTCGCGCTCGCGCCCGTCTCTGCACGATG
ACGCCTCGCGCCCGCGCACTTTGGTCGATCTGCTGCGCCCCAACGCTTCC
CGCGCCGAGCAGGTGCTGGGCGATGACGCCCCCAACGACGCTTGGTCCGT
CCTCGCCAACACCGTCGATAACCTGCCGTCGCACGCCACACAGCACCCTC
CTGTGCATGACAGCCATCCAGATGCCGCCGTCGACTTGCATCAAACTCAG
CACCAACAGCTTCCCGTCGACTTGTCCATCAAGACATCGCTCAACATCAC
GTCGTCCAAATCGCTGTGGTGGACGCGCGTCCGAGGCCAGGCTGAGGAGT
ACGAGGCGCTCCACGACTTATTGTCTGGCGTAGACACTCTGGCCGCCGCC
AACGTCGTCAGACCCCCGCTGGGCAGCGACGCCGTCGTCGAAGCCCAAGT
ACTAACTGATACCCTGACGAGCGCAAAACGCCAGTTCTACCGCGCTCTGC
TGCACTTTCGCTACCCGTGCACCACCCTGCCCCCGGTCATCTCGCGACGA
TGGCAGACCGTTTTCGCCTCCAGCGCCCGCACAAGGCCAGACTCCGCCTT
GCAGGAAGCCGCAAACGTGGCCATGGAGCGCTTGCACCTGTGGCAAAGCG
CCCTGCAGTCGCTGTTTTTCGGCTACAAGCGCGGCCACATCGATCACTTC
TACATCCTGCTCCCATCCACAACCCTGCTTTTCAGTCATGCCGCCGCTCA
CAGCGCAACCAGCGTCCCCAAGCGCCCAGCGCACGTGCCGTCGCCATCCG
ATTCGCCGCTGCGCGCCTGTTTTGCCAACGGATCCCTGGGCTTGCGCTCG
TTACTCTCTGACTATGCCGTGCCGTTCAGACTGCTGCACCCACCGAATGC
GTCCGAAGCGCACAGCGAGCCGCCTGTCATCGCCGAGGGCCGGGTAGCAG
TGCAAGCTGTGTACAATTTTGTCATGAGCGTGGGTCACAAGATTTCTAAC
GCCGCTGATGTTCCTGTGTTGCTGTGCGACAAGCCGTTTCGCGGCGGCAC
CGCCATCACCGCGAACGTCACGGATGCCGACGAGGCAAACGTGATCAATT
CGGCCGGCGGTGCCACCAAGCTCACATACTCCGTCAAGATCAATGGCTTT
CTCACTCCGCGCCAGGTGCGAGCCGTTTGTAAAGCTTTGGTTGATACTCA
AGATCGTGATTTCTCCGTTCAAATGATCACCGAAGCACGCTCACAAATGT
TGAATGTGTGCGATCAGTCAATTAGTTTATTGTCCGCTGATGGCCCAACA
TCTTCTCAGCAGACAACATCTTGTCCAATTCAGGGCCGAGTCTTGTCAAG
AGTCACAAGACAAACAGCTTCTCCCAACTTCGTTCTTTTCACCCGAGCTA
TCGAATAG
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protein sequence of Gvermi8035.t1

>Gvermi8035.t1 ID=Gvermi8035.t1|Name=Gvermi8035.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=486bp
MAPPRKRPRIQPVSAKRPPAPPRQSRSRPSLHDDASRPRTLVDLLRPNAS
RAEQVLGDDAPNDAWSVLANTVDNLPSHATQHPPVHDSHPDAAVDLHQTQ
HQQLPVDLSIKTSLNITSSKSLWWTRVRGQAEEYEALHDLLSGVDTLAAA
NVVRPPLGSDAVVEAQVLTDTLTSAKRQFYRALLHFRYPCTTLPPVISRR
WQTVFASSARTRPDSALQEAANVAMERLHLWQSALQSLFFGYKRGHIDHF
YILLPSTTLLFSHAAAHSATSVPKRPAHVPSPSDSPLRACFANGSLGLRS
LLSDYAVPFRLLHPPNASEAHSEPPVIAEGRVAVQAVYNFVMSVGHKISN
AADVPVLLCDKPFRGGTAITANVTDADEANVINSAGGATKLTYSVKINGF
LTPRQVRAVCKALVDTQDRDFSVQMITEARSQMLNVCDQSISLLSADGPT
SSQQTTSCPIQGRVLSRVTRQTASPNFVLFTRAIE*
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mRNA from alignment at ScGOVlb_24226:771571..773028-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8035.t1 ID=Gvermi8035.t1|Name=Gvermi8035.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at ScGOVlb_24226:771571..773028- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCGCCGCGAAAACGACCGCGTATTCAACCCGTGAGCGCCAAGCG
CCCGCCCGCCCCCCCGCGTCAGTCGCGCTCGCGCCCGTCTCTGCACGATG
ACGCCTCGCGCCCGCGCACTTTGGTCGATCTGCTGCGCCCCAACGCTTCC
CGCGCCGAGCAGGTGCTGGGCGATGACGCCCCCAACGACGCTTGGTCCGT
CCTCGCCAACACCGTCGATAACCTGCCGTCGCACGCCACACAGCACCCTC
CTGTGCATGACAGCCATCCAGATGCCGCCGTCGACTTGCATCAAACTCAG
CACCAACAGCTTCCCGTCGACTTGTCCATCAAGACATCGCTCAACATCAC
GTCGTCCAAATCGCTGTGGTGGACGCGCGTCCGAGGCCAGGCTGAGGAGT
ACGAGGCGCTCCACGACTTATTGTCTGGCGTAGACACTCTGGCCGCCGCC
AACGTCGTCAGACCCCCGCTGGGCAGCGACGCCGTCGTCGAAGCCCAAGT
ACTAACTGATACCCTGACGAGCGCAAAACGCCAGTTCTACCGCGCTCTGC
TGCACTTTCGCTACCCGTGCACCACCCTGCCCCCGGTCATCTCGCGACGA
TGGCAGACCGTTTTCGCCTCCAGCGCCCGCACAAGGCCAGACTCCGCCTT
GCAGGAAGCCGCAAACGTGGCCATGGAGCGCTTGCACCTGTGGCAAAGCG
CCCTGCAGTCGCTGTTTTTCGGCTACAAGCGCGGCCACATCGATCACTTC
TACATCCTGCTCCCATCCACAACCCTGCTTTTCAGTCATGCCGCCGCTCA
CAGCGCAACCAGCGTCCCCAAGCGCCCAGCGCACGTGCCGTCGCCATCCG
ATTCGCCGCTGCGCGCCTGTTTTGCCAACGGATCCCTGGGCTTGCGCTCG
TTACTCTCTGACTATGCCGTGCCGTTCAGACTGCTGCACCCACCGAATGC
GTCCGAAGCGCACAGCGAGCCGCCTGTCATCGCCGAGGGCCGGGTAGCAG
TGCAAGCTGTGTACAATTTTGTCATGAGCGTGGGTCACAAGATTTCTAAC
GCCGCTGATGTTCCTGTGTTGCTGTGCGACAAGCCGTTTCGCGGCGGCAC
CGCCATCACCGCGAACGTCACGGATGCCGACGAGGCAAACGTGATCAATT
CGGCCGGCGGTGCCACCAAGCTCACATACTCCGTCAAGATCAATGGCTTT
CTCACTCCGCGCCAGGTGCGAGCCGTTTGTAAAGCTTTGGTTGATACTCA
AGATCGTGATTTCTCCGTTCAAATGATCACCGAAGCACGCTCACAAATGT
TGAATGTGTGCGATCAGTCAATTAGTTTATTGTCCGCTGATGGCCCAACA
TCTTCTCAGCAGACAACATCTTGTCCAATTCAGGGCCGAGTCTTGTCAAG
AGTCACAAGACAAACAGCTTCTCCCAACTTCGTTCTTTTCACCCGAGCTA
TCGAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:771571..773028-

>Gvermi8035.t1 ID=Gvermi8035.t1|Name=Gvermi8035.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1458bp|location=Sequence derived from alignment at ScGOVlb_24226:771571..773028- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCGCCGCGAAAACGACCGCGTATTCAACCCGTGAGCGCCAAGCG
CCCGCCCGCCCCCCCGCGTCAGTCGCGCTCGCGCCCGTCTCTGCACGATG
ACGCCTCGCGCCCGCGCACTTTGGTCGATCTGCTGCGCCCCAACGCTTCC
CGCGCCGAGCAGGTGCTGGGCGATGACGCCCCCAACGACGCTTGGTCCGT
CCTCGCCAACACCGTCGATAACCTGCCGTCGCACGCCACACAGCACCCTC
CTGTGCATGACAGCCATCCAGATGCCGCCGTCGACTTGCATCAAACTCAG
CACCAACAGCTTCCCGTCGACTTGTCCATCAAGACATCGCTCAACATCAC
GTCGTCCAAATCGCTGTGGTGGACGCGCGTCCGAGGCCAGGCTGAGGAGT
ACGAGGCGCTCCACGACTTATTGTCTGGCGTAGACACTCTGGCCGCCGCC
AACGTCGTCAGACCCCCGCTGGGCAGCGACGCCGTCGTCGAAGCCCAAGT
ACTAACTGATACCCTGACGAGCGCAAAACGCCAGTTCTACCGCGCTCTGC
TGCACTTTCGCTACCCGTGCACCACCCTGCCCCCGGTCATCTCGCGACGA
TGGCAGACCGTTTTCGCCTCCAGCGCCCGCACAAGGCCAGACTCCGCCTT
GCAGGAAGCCGCAAACGTGGCCATGGAGCGCTTGCACCTGTGGCAAAGCG
CCCTGCAGTCGCTGTTTTTCGGCTACAAGCGCGGCCACATCGATCACTTC
TACATCCTGCTCCCATCCACAACCCTGCTTTTCAGTCATGCCGCCGCTCA
CAGCGCAACCAGCGTCCCCAAGCGCCCAGCGCACGTGCCGTCGCCATCCG
ATTCGCCGCTGCGCGCCTGTTTTGCCAACGGATCCCTGGGCTTGCGCTCG
TTACTCTCTGACTATGCCGTGCCGTTCAGACTGCTGCACCCACCGAATGC
GTCCGAAGCGCACAGCGAGCCGCCTGTCATCGCCGAGGGCCGGGTAGCAG
TGCAAGCTGTGTACAATTTTGTCATGAGCGTGGGTCACAAGATTTCTAAC
GCCGCTGATGTTCCTGTGTTGCTGTGCGACAAGCCGTTTCGCGGCGGCAC
CGCCATCACCGCGAACGTCACGGATGCCGACGAGGCAAACGTGATCAATT
CGGCCGGCGGTGCCACCAAGCTCACATACTCCGTCAAGATCAATGGCTTT
CTCACTCCGCGCCAGGTGCGAGCCGTTTGTAAAGCTTTGGTTGATACTCA
AGATCGTGATTTCTCCGTTCAAATGATCACCGAAGCACGCTCACAAATGT
TGAATGTGTGCGATCAGTCAATTAGTTTATTGTCCGCTGATGGCCCAACA
TCTTCTCAGCAGACAACATCTTGTCCAATTCAGGGCCGAGTCTTGTCAAG
AGTCACAAGACAAACAGCTTCTCCCAACTTCGTTCTTTTCACCCGAGCTA
TCGAATAG
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