Gvermi7983.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7983.t1
Unique NameGvermi7983.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:478905..479960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706899.1
PFAMsGlyco_hydro_2
Max annot lvl2759|Eukaryota
KEGG koko:K01192
KEGG Pathwayko00511,ko04142,map00511,map04142
Evalue6.8e-51
EggNOG OGsCOG3250@1|root,KOG2230@2759|Eukaryota
EC3.2.1.25
Descriptionbeta-mannosidase activity
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7983Gvermi7983Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 478905..481919 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7983.t1.stop1Gvermi7983.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 478905..478907 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7983.t1.CDS1Gvermi7983.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 478905..479960 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7983.t1.exon1Gvermi7983.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 478905..479960 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7983.t1.start1Gvermi7983.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 479958..479960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7983.t1Gvermi7983.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 478905..479960 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7983.t1 ID=Gvermi7983.t1|Name=Gvermi7983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=352bp
MQSYLSEQGAVACVGDAPGALNPFGPTMEAHQKNASGNFIIMEYCQRLFR
APYNYWSLSYQSQLNQMICMRTGVEHFRRSWPYCAGALYWQLNDCWPCFS
WSSLEYGGNWKALHYGAAKFFAPLLISAVHHGEETVGICNLISFTSDTGL
FSVYGTFDGVDAQVALHLCWSLFDVRANETTKTVKEEHSLKQDTSRKLAT
VDVRQQVQSDPRNYVLRLVAKSKCRQYESSSTVWLCSPRLCELAPAKLTV
AHEALHVHGGKSKAVLHIHCPTFAPFVQVELNHPSAGVDNGDDKHHETRY
KTPVGYRLSDNYFDLFPGERKRVELTVYLETCDALVFPNLKVRSLLDSYM
T*
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spliced messenger RNA

>Gvermi7983.t1 ID=Gvermi7983.t1|Name=Gvermi7983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at ScGOVlb_24226:478905..479960- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTCGTACCTCTCCGAGCAGGGCGCCGTCGCCTGTGTGGGCGACGC
CCCCGGTGCGCTGAACCCGTTTGGGCCCACGATGGAGGCGCACCAGAAGA
ACGCCAGCGGAAACTTTATCATCATGGAATACTGCCAGCGCCTGTTCCGC
GCGCCCTACAACTACTGGTCGCTGAGCTACCAGTCGCAGCTAAACCAGAT
GATCTGCATGCGAACCGGCGTCGAGCATTTTCGAAGAAGCTGGCCCTACT
GCGCCGGGGCTCTGTACTGGCAGCTGAACGACTGCTGGCCCTGTTTTTCG
TGGAGCAGTTTGGAGTATGGCGGCAACTGGAAAGCGCTCCACTACGGCGC
CGCCAAGTTTTTCGCCCCGTTGCTCATCAGCGCCGTGCACCATGGTGAGG
AAACCGTGGGCATATGTAACTTGATATCTTTCACGAGCGACACTGGCCTG
TTCTCCGTGTACGGCACGTTTGATGGTGTGGACGCTCAAGTAGCGTTGCA
TCTGTGTTGGAGTTTATTCGATGTCCGCGCCAATGAAACCACAAAAACTG
TCAAAGAAGAGCACTCGCTCAAGCAGGACACCTCTCGCAAACTGGCCACC
GTAGATGTGCGCCAACAAGTGCAAAGTGACCCTCGCAACTACGTGCTGCG
CCTCGTGGCAAAGAGCAAGTGCCGTCAGTATGAATCGTCGTCAACTGTGT
GGCTTTGTTCGCCGCGCCTTTGCGAATTGGCTCCCGCCAAACTCACAGTG
GCCCATGAAGCTCTTCATGTGCACGGGGGGAAGAGCAAGGCCGTTTTGCA
CATTCATTGCCCCACGTTTGCCCCCTTTGTGCAGGTCGAACTGAATCATC
CCAGTGCTGGGGTCGACAACGGTGACGACAAGCACCACGAAACGCGGTAT
AAGACTCCAGTAGGATATAGGTTGTCGGACAACTATTTCGACTTGTTTCC
TGGCGAGCGCAAACGGGTTGAACTCACGGTGTACCTGGAGACTTGCGATG
CTCTGGTGTTTCCAAACTTGAAGGTTCGCAGTCTGTTGGACTCCTACATG
ACGTGA
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protein sequence of Gvermi7983.t1

>Gvermi7983.t1 ID=Gvermi7983.t1|Name=Gvermi7983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=352bp
MQSYLSEQGAVACVGDAPGALNPFGPTMEAHQKNASGNFIIMEYCQRLFR
APYNYWSLSYQSQLNQMICMRTGVEHFRRSWPYCAGALYWQLNDCWPCFS
WSSLEYGGNWKALHYGAAKFFAPLLISAVHHGEETVGICNLISFTSDTGL
FSVYGTFDGVDAQVALHLCWSLFDVRANETTKTVKEEHSLKQDTSRKLAT
VDVRQQVQSDPRNYVLRLVAKSKCRQYESSSTVWLCSPRLCELAPAKLTV
AHEALHVHGGKSKAVLHIHCPTFAPFVQVELNHPSAGVDNGDDKHHETRY
KTPVGYRLSDNYFDLFPGERKRVELTVYLETCDALVFPNLKVRSLLDSYM
T*
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mRNA from alignment at ScGOVlb_24226:478905..479960-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7983.t1 ID=Gvermi7983.t1|Name=Gvermi7983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at ScGOVlb_24226:478905..479960- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGTCGTACCTCTCCGAGCAGGGCGCCGTCGCCTGTGTGGGCGACGC
CCCCGGTGCGCTGAACCCGTTTGGGCCCACGATGGAGGCGCACCAGAAGA
ACGCCAGCGGAAACTTTATCATCATGGAATACTGCCAGCGCCTGTTCCGC
GCGCCCTACAACTACTGGTCGCTGAGCTACCAGTCGCAGCTAAACCAGAT
GATCTGCATGCGAACCGGCGTCGAGCATTTTCGAAGAAGCTGGCCCTACT
GCGCCGGGGCTCTGTACTGGCAGCTGAACGACTGCTGGCCCTGTTTTTCG
TGGAGCAGTTTGGAGTATGGCGGCAACTGGAAAGCGCTCCACTACGGCGC
CGCCAAGTTTTTCGCCCCGTTGCTCATCAGCGCCGTGCACCATGGTGAGG
AAACCGTGGGCATATGTAACTTGATATCTTTCACGAGCGACACTGGCCTG
TTCTCCGTGTACGGCACGTTTGATGGTGTGGACGCTCAAGTAGCGTTGCA
TCTGTGTTGGAGTTTATTCGATGTCCGCGCCAATGAAACCACAAAAACTG
TCAAAGAAGAGCACTCGCTCAAGCAGGACACCTCTCGCAAACTGGCCACC
GTAGATGTGCGCCAACAAGTGCAAAGTGACCCTCGCAACTACGTGCTGCG
CCTCGTGGCAAAGAGCAAGTGCCGTCAGTATGAATCGTCGTCAACTGTGT
GGCTTTGTTCGCCGCGCCTTTGCGAATTGGCTCCCGCCAAACTCACAGTG
GCCCATGAAGCTCTTCATGTGCACGGGGGGAAGAGCAAGGCCGTTTTGCA
CATTCATTGCCCCACGTTTGCCCCCTTTGTGCAGGTCGAACTGAATCATC
CCAGTGCTGGGGTCGACAACGGTGACGACAAGCACCACGAAACGCGGTAT
AAGACTCCAGTAGGATATAGGTTGTCGGACAACTATTTCGACTTGTTTCC
TGGCGAGCGCAAACGGGTTGAACTCACGGTGTACCTGGAGACTTGCGATG
CTCTGGTGTTTCCAAACTTGAAGGTTCGCAGTCTGTTGGACTCCTACATG
ACGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:478905..479960-

>Gvermi7983.t1 ID=Gvermi7983.t1|Name=Gvermi7983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1056bp|location=Sequence derived from alignment at ScGOVlb_24226:478905..479960- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGTCGTACCTCTCCGAGCAGGGCGCCGTCGCCTGTGTGGGCGACGC
CCCCGGTGCGCTGAACCCGTTTGGGCCCACGATGGAGGCGCACCAGAAGA
ACGCCAGCGGAAACTTTATCATCATGGAATACTGCCAGCGCCTGTTCCGC
GCGCCCTACAACTACTGGTCGCTGAGCTACCAGTCGCAGCTAAACCAGAT
GATCTGCATGCGAACCGGCGTCGAGCATTTTCGAAGAAGCTGGCCCTACT
GCGCCGGGGCTCTGTACTGGCAGCTGAACGACTGCTGGCCCTGTTTTTCG
TGGAGCAGTTTGGAGTATGGCGGCAACTGGAAAGCGCTCCACTACGGCGC
CGCCAAGTTTTTCGCCCCGTTGCTCATCAGCGCCGTGCACCATGGTGAGG
AAACCGTGGGCATATGTAACTTGATATCTTTCACGAGCGACACTGGCCTG
TTCTCCGTGTACGGCACGTTTGATGGTGTGGACGCTCAAGTAGCGTTGCA
TCTGTGTTGGAGTTTATTCGATGTCCGCGCCAATGAAACCACAAAAACTG
TCAAAGAAGAGCACTCGCTCAAGCAGGACACCTCTCGCAAACTGGCCACC
GTAGATGTGCGCCAACAAGTGCAAAGTGACCCTCGCAACTACGTGCTGCG
CCTCGTGGCAAAGAGCAAGTGCCGTCAGTATGAATCGTCGTCAACTGTGT
GGCTTTGTTCGCCGCGCCTTTGCGAATTGGCTCCCGCCAAACTCACAGTG
GCCCATGAAGCTCTTCATGTGCACGGGGGGAAGAGCAAGGCCGTTTTGCA
CATTCATTGCCCCACGTTTGCCCCCTTTGTGCAGGTCGAACTGAATCATC
CCAGTGCTGGGGTCGACAACGGTGACGACAAGCACCACGAAACGCGGTAT
AAGACTCCAGTAGGATATAGGTTGTCGGACAACTATTTCGACTTGTTTCC
TGGCGAGCGCAAACGGGTTGAACTCACGGTGTACCTGGAGACTTGCGATG
CTCTGGTGTTTCCAAACTTGAAGGTTCGCAGTCTGTTGGACTCCTACATG
ACGTGA
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