Gvermi8080.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8080.t1
Unique Name	Gvermi8080.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	464

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:949696..951087 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	44689.DDB0220702
PFAMs	Pkinase
Max annot lvl	554915\|Amoebozoa
KEGG ko	ko:K04688
KEGG Pathway	ko01521,ko01522,ko04012,ko04066,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04350,ko04371,ko04666,ko04714,ko04910,ko04931,ko05165,ko05200,ko05205,ko05210,ko05212,ko05221,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04012,map04066,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04350,map04371,map04666,map04714,map04910,map04931,map05165,map05200,map05205,map05210,map05212,map05221,map05224,map05225,map05226,map05231
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Evalue	7.71e-84
EggNOG OGs	KOG0598@1\|root,KOG0598@2759\|Eukaryota,3XGE5@554915\|Amoebozoa
EC	2.7.11.1
Description	Haspin like kinase domain
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8080	Gvermi8080	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 949696..951087 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8080.t1.start1	Gvermi8080.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 949696..949698 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8080.t1.CDS1	Gvermi8080.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 949696..951087 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8080.t1.exon1	Gvermi8080.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 949696..951087 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8080.t1.stop1	Gvermi8080.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 951085..951087 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8080.t1	Gvermi8080.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 949696..951087 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:949696..951087+
coding sequence from alignment at ScGOVlb_24226:949696..951087+

mRNA sequence

>Gvermi8080.t1 ID=Gvermi8080.t1|Name=Gvermi8080.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=464bp
MHLELVPPLGSDLTANDFTNDFLTPASSPPPSTPPLLRMQPLASPPSLGR
RRLDAFHIMCLIGKGGFGKVFMVRHKATAAVYAMKVMEKDALINRKAVQD
AHTERNILALVGEYDAPFIIRLHVAFQTSRRVYLVMDFASGGELMFHLRR
EAMLSEAQAKFYAAELLIALETLHKMHIIHRDIKPENVLLDGEGHLILTD
FGLAKELTDHGEQTHSWCGSEDYMAPEIITREASCGKAADYWAYGIFIYD
CLCGQPPFSPLHEKGKLSRKRLHERIVRCKYRLPKYLTSECQSLIRKLLT
KDVTKRLTDPEAIRNHPWFREVNWEAIRTRTAVPPIVPSQSSPTACFSPS
LTKAACAAPVSPPNIYMEARSSPMVIANHSQAAASDSMWQGFSFVAPGME
VHFELAPALVADGSAGGAASVVPAQGVSGVASSETDVEESLVAELAEFSI
EAASAVEIVDGGV*

spliced messenger RNA

>Gvermi8080.t1 ID=Gvermi8080.t1|Name=Gvermi8080.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at ScGOVlb_24226:949696..951087+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTTGGAGCTTGTTCCGCCCTTGGGCTCCGACCTAACTGCTAACGA
TTTCACCAATGACTTCTTGACGCCGGCGTCGTCGCCACCACCATCCACCC
CGCCTTTGCTGCGCATGCAGCCACTAGCCAGTCCACCCTCACTTGGCCGC
CGCCGTTTAGATGCCTTCCACATCATGTGCCTCATCGGCAAAGGCGGCTT
CGGCAAGGTGTTCATGGTTCGCCACAAGGCCACCGCCGCCGTCTACGCCA
TGAAGGTCATGGAAAAGGACGCCTTGATCAATCGCAAGGCCGTTCAGGAC
GCGCACACTGAACGGAACATCCTGGCGCTCGTGGGCGAATACGATGCCCC
TTTCATCATTCGCCTTCACGTCGCCTTCCAAACTTCCAGGAGAGTATATC
TTGTGATGGACTTTGCGTCCGGCGGCGAACTCATGTTCCATTTGCGTCGG
GAGGCCATGCTCAGCGAGGCGCAGGCCAAGTTCTACGCCGCCGAACTTCT
GATTGCGCTTGAGACCCTGCACAAAATGCACATTATCCACAGGGACATCA
AGCCAGAGAACGTTCTGCTGGACGGTGAGGGTCATCTTATTCTCACCGAC
TTTGGGCTTGCGAAGGAGCTTACCGACCACGGCGAGCAAACGCACTCGTG
GTGCGGTTCGGAGGACTACATGGCTCCCGAAATCATCACGCGCGAAGCTT
CGTGCGGAAAGGCGGCCGACTACTGGGCGTACGGCATTTTCATATACGAC
TGCCTCTGTGGTCAACCGCCGTTCTCACCGCTGCACGAAAAGGGAAAGCT
CAGCCGCAAGCGCCTGCACGAGCGCATTGTGCGGTGCAAGTACAGGCTGC
CCAAGTATCTGACCTCGGAATGCCAGTCGCTGATTCGAAAGCTGCTGACC
AAGGACGTGACGAAGCGATTGACGGACCCGGAGGCGATTCGCAACCACCC
GTGGTTCCGCGAGGTCAACTGGGAGGCCATTCGCACCCGTACAGCAGTGC
CGCCCATCGTTCCGTCGCAGTCGTCGCCAACGGCGTGTTTCTCACCGTCG
CTGACGAAGGCCGCGTGCGCGGCTCCCGTGTCGCCGCCCAACATCTACAT
GGAGGCCAGAAGCTCCCCGATGGTGATTGCGAATCACTCGCAGGCAGCCG
CGAGCGACAGCATGTGGCAGGGCTTTTCGTTTGTTGCGCCGGGAATGGAG
GTTCATTTCGAGCTTGCTCCGGCGTTAGTTGCGGACGGCAGCGCCGGGGG
TGCCGCAAGTGTGGTGCCCGCACAGGGAGTGTCGGGGGTAGCGTCGTCCG
AGACGGACGTGGAAGAATCGCTTGTGGCAGAGCTGGCAGAATTTTCGATC
GAGGCCGCCAGCGCTGTGGAAATTGTCGACGGTGGTGTGTGA

protein sequence of Gvermi8080.t1

>Gvermi8080.t1 ID=Gvermi8080.t1|Name=Gvermi8080.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=464bp
MHLELVPPLGSDLTANDFTNDFLTPASSPPPSTPPLLRMQPLASPPSLGR
RRLDAFHIMCLIGKGGFGKVFMVRHKATAAVYAMKVMEKDALINRKAVQD
AHTERNILALVGEYDAPFIIRLHVAFQTSRRVYLVMDFASGGELMFHLRR
EAMLSEAQAKFYAAELLIALETLHKMHIIHRDIKPENVLLDGEGHLILTD
FGLAKELTDHGEQTHSWCGSEDYMAPEIITREASCGKAADYWAYGIFIYD
CLCGQPPFSPLHEKGKLSRKRLHERIVRCKYRLPKYLTSECQSLIRKLLT
KDVTKRLTDPEAIRNHPWFREVNWEAIRTRTAVPPIVPSQSSPTACFSPS
LTKAACAAPVSPPNIYMEARSSPMVIANHSQAAASDSMWQGFSFVAPGME
VHFELAPALVADGSAGGAASVVPAQGVSGVASSETDVEESLVAELAEFSI
EAASAVEIVDGGV*

mRNA from alignment at ScGOVlb_24226:949696..951087+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8080.t1 ID=Gvermi8080.t1|Name=Gvermi8080.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at ScGOVlb_24226:949696..951087+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACTTGGAGCTTGTTCCGCCCTTGGGCTCCGACCTAACTGCTAACGA
TTTCACCAATGACTTCTTGACGCCGGCGTCGTCGCCACCACCATCCACCC
CGCCTTTGCTGCGCATGCAGCCACTAGCCAGTCCACCCTCACTTGGCCGC
CGCCGTTTAGATGCCTTCCACATCATGTGCCTCATCGGCAAAGGCGGCTT
CGGCAAGGTGTTCATGGTTCGCCACAAGGCCACCGCCGCCGTCTACGCCA
TGAAGGTCATGGAAAAGGACGCCTTGATCAATCGCAAGGCCGTTCAGGAC
GCGCACACTGAACGGAACATCCTGGCGCTCGTGGGCGAATACGATGCCCC
TTTCATCATTCGCCTTCACGTCGCCTTCCAAACTTCCAGGAGAGTATATC
TTGTGATGGACTTTGCGTCCGGCGGCGAACTCATGTTCCATTTGCGTCGG
GAGGCCATGCTCAGCGAGGCGCAGGCCAAGTTCTACGCCGCCGAACTTCT
GATTGCGCTTGAGACCCTGCACAAAATGCACATTATCCACAGGGACATCA
AGCCAGAGAACGTTCTGCTGGACGGTGAGGGTCATCTTATTCTCACCGAC
TTTGGGCTTGCGAAGGAGCTTACCGACCACGGCGAGCAAACGCACTCGTG
GTGCGGTTCGGAGGACTACATGGCTCCCGAAATCATCACGCGCGAAGCTT
CGTGCGGAAAGGCGGCCGACTACTGGGCGTACGGCATTTTCATATACGAC
TGCCTCTGTGGTCAACCGCCGTTCTCACCGCTGCACGAAAAGGGAAAGCT
CAGCCGCAAGCGCCTGCACGAGCGCATTGTGCGGTGCAAGTACAGGCTGC
CCAAGTATCTGACCTCGGAATGCCAGTCGCTGATTCGAAAGCTGCTGACC
AAGGACGTGACGAAGCGATTGACGGACCCGGAGGCGATTCGCAACCACCC
GTGGTTCCGCGAGGTCAACTGGGAGGCCATTCGCACCCGTACAGCAGTGC
CGCCCATCGTTCCGTCGCAGTCGTCGCCAACGGCGTGTTTCTCACCGTCG
CTGACGAAGGCCGCGTGCGCGGCTCCCGTGTCGCCGCCCAACATCTACAT
GGAGGCCAGAAGCTCCCCGATGGTGATTGCGAATCACTCGCAGGCAGCCG
CGAGCGACAGCATGTGGCAGGGCTTTTCGTTTGTTGCGCCGGGAATGGAG
GTTCATTTCGAGCTTGCTCCGGCGTTAGTTGCGGACGGCAGCGCCGGGGG
TGCCGCAAGTGTGGTGCCCGCACAGGGAGTGTCGGGGGTAGCGTCGTCCG
AGACGGACGTGGAAGAATCGCTTGTGGCAGAGCTGGCAGAATTTTCGATC
GAGGCCGCCAGCGCTGTGGAAATTGTCGACGGTGGTGTGTGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:949696..951087+

>Gvermi8080.t1 ID=Gvermi8080.t1|Name=Gvermi8080.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1392bp|location=Sequence derived from alignment at ScGOVlb_24226:949696..951087+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACTTGGAGCTTGTTCCGCCCTTGGGCTCCGACCTAACTGCTAACGA
TTTCACCAATGACTTCTTGACGCCGGCGTCGTCGCCACCACCATCCACCC
CGCCTTTGCTGCGCATGCAGCCACTAGCCAGTCCACCCTCACTTGGCCGC
CGCCGTTTAGATGCCTTCCACATCATGTGCCTCATCGGCAAAGGCGGCTT
CGGCAAGGTGTTCATGGTTCGCCACAAGGCCACCGCCGCCGTCTACGCCA
TGAAGGTCATGGAAAAGGACGCCTTGATCAATCGCAAGGCCGTTCAGGAC
GCGCACACTGAACGGAACATCCTGGCGCTCGTGGGCGAATACGATGCCCC
TTTCATCATTCGCCTTCACGTCGCCTTCCAAACTTCCAGGAGAGTATATC
TTGTGATGGACTTTGCGTCCGGCGGCGAACTCATGTTCCATTTGCGTCGG
GAGGCCATGCTCAGCGAGGCGCAGGCCAAGTTCTACGCCGCCGAACTTCT
GATTGCGCTTGAGACCCTGCACAAAATGCACATTATCCACAGGGACATCA
AGCCAGAGAACGTTCTGCTGGACGGTGAGGGTCATCTTATTCTCACCGAC
TTTGGGCTTGCGAAGGAGCTTACCGACCACGGCGAGCAAACGCACTCGTG
GTGCGGTTCGGAGGACTACATGGCTCCCGAAATCATCACGCGCGAAGCTT
CGTGCGGAAAGGCGGCCGACTACTGGGCGTACGGCATTTTCATATACGAC
TGCCTCTGTGGTCAACCGCCGTTCTCACCGCTGCACGAAAAGGGAAAGCT
CAGCCGCAAGCGCCTGCACGAGCGCATTGTGCGGTGCAAGTACAGGCTGC
CCAAGTATCTGACCTCGGAATGCCAGTCGCTGATTCGAAAGCTGCTGACC
AAGGACGTGACGAAGCGATTGACGGACCCGGAGGCGATTCGCAACCACCC
GTGGTTCCGCGAGGTCAACTGGGAGGCCATTCGCACCCGTACAGCAGTGC
CGCCCATCGTTCCGTCGCAGTCGTCGCCAACGGCGTGTTTCTCACCGTCG
CTGACGAAGGCCGCGTGCGCGGCTCCCGTGTCGCCGCCCAACATCTACAT
GGAGGCCAGAAGCTCCCCGATGGTGATTGCGAATCACTCGCAGGCAGCCG
CGAGCGACAGCATGTGGCAGGGCTTTTCGTTTGTTGCGCCGGGAATGGAG
GTTCATTTCGAGCTTGCTCCGGCGTTAGTTGCGGACGGCAGCGCCGGGGG
TGCCGCAAGTGTGGTGCCCGCACAGGGAGTGTCGGGGGTAGCGTCGTCCG
AGACGGACGTGGAAGAATCGCTTGTGGCAGAGCTGGCAGAATTTTCGATC
GAGGCCGCCAGCGCTGTGGAAATTGTCGACGGTGGTGTGTGA