Gvermi7956.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7956.t1
Unique NameGvermi7956.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:303106..303865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005843019.1
Preferred nameRAB11
PFAMsRas
Max annot lvl3041|Chlorophyta
KEGG koko:K07904,ko:K07905,ko:K11801
KEGG Pathwayko04144,ko04152,ko04961,ko04962,ko04972,map04144,map04152,map04961,map04962,map04972
Evalue4.15e-88
EggNOG OGsCOG1100@1|root,KOG0087@2759|Eukaryota,37J9I@33090|Viridiplantae,34GUF@3041|Chlorophyta
DescriptionRab subfamily of small GTPases
COG categoryU
BRITEko00000,ko00001,ko04031,ko04121,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7956Gvermi7956Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 303106..303865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7956.t1Gvermi7956.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 303106..303865 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7956.t1.start1Gvermi7956.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 303106..303108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7956.t1.CDS1Gvermi7956.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 303106..303145 +
Gvermi7956.t1.CDS2Gvermi7956.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 303243..303865 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7956.t1.exon1Gvermi7956.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 303106..303145 +
Gvermi7956.t1.exon2Gvermi7956.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 303243..303865 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7956.t1.intron1Gvermi7956.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 303146..303242 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7956.t1.stop1Gvermi7956.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 303863..303865 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7956.t1 ID=Gvermi7956.t1|Name=Gvermi7956.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=221bp
MARNEDEYDYLFKIVLIGDSGVGKSNLLLRFTRNEVDLNSKTTIGVEFAT
RSVPIQGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRNTFE
SVGRWLKELKDHADAKIVVMLVGNKCDLRAERQVSVEDGTAAAAKFGLSF
LETSALDATNVDESFKQVLQQIHNVTTSNVVSGAIGEHAPDPHGEPIKLE
ALPSRKSAARGGGSSSSKCC*
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spliced messenger RNA

>Gvermi7956.t1 ID=Gvermi7956.t1|Name=Gvermi7956.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=663bp|location=Sequence derived from alignment at ScGOVlb_24226:303106..303865+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGCAACGAGGACGAGTACGACTACCTGTTCAAGATCGTGCTGAT
AGGGGACAGCGGGGTGGGCAAGAGCAACCTGCTGCTGCGCTTCACGCGCA
ACGAGGTGGACCTCAACTCCAAGACGACCATCGGGGTGGAGTTTGCCACG
CGCTCCGTCCCCATCCAGGGCAAGACCATCAAGGCGCAGATCTGGGACAC
GGCCGGGCAGGAGCGCTACCGCGCCATCACGTCGGCGTACTACCGCGGCG
CCGTGGGCGCGCTGCTGGTGTACGACATCACCAAGCGCAACACGTTTGAG
AGCGTGGGGCGCTGGCTCAAGGAGCTCAAGGACCACGCCGACGCCAAGAT
CGTGGTGATGCTGGTGGGCAACAAGTGCGACCTGCGCGCCGAGCGGCAGG
TGTCGGTGGAGGACGGCACGGCGGCCGCGGCCAAGTTCGGCCTCAGCTTC
CTGGAGACGTCGGCGCTGGACGCCACCAACGTGGACGAGAGCTTCAAGCA
GGTGCTGCAGCAGATCCACAACGTGACCACGTCCAACGTGGTGTCGGGCG
CCATTGGCGAGCACGCGCCCGACCCGCACGGCGAGCCCATCAAGCTGGAG
GCGCTGCCGTCGAGGAAGAGCGCCGCGCgcggcggcggcagcagcagcag
caAGTGCTGTTAG
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protein sequence of Gvermi7956.t1

>Gvermi7956.t1 ID=Gvermi7956.t1|Name=Gvermi7956.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=221bp
MARNEDEYDYLFKIVLIGDSGVGKSNLLLRFTRNEVDLNSKTTIGVEFAT
RSVPIQGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRNTFE
SVGRWLKELKDHADAKIVVMLVGNKCDLRAERQVSVEDGTAAAAKFGLSF
LETSALDATNVDESFKQVLQQIHNVTTSNVVSGAIGEHAPDPHGEPIKLE
ALPSRKSAARGGGSSSSKCC*
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mRNA from alignment at ScGOVlb_24226:303106..303865+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7956.t1 ID=Gvermi7956.t1|Name=Gvermi7956.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=760bp|location=Sequence derived from alignment at ScGOVlb_24226:303106..303865+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCGCAACGAGGACGAGTACGACTACCTGTTCAAGAGTAAGCTTTG
CCGCGCCAGTTTgcgcagccgccggcgccagcgccgccgccgccgccgct
gacccgcgccgtcgttgcgtgcgtgcgccgcgcgcAGTCGTGCTGATAGG
GGACAGCGGGGTGGGCAAGAGCAACCTGCTGCTGCGCTTCACGCGCAACG
AGGTGGACCTCAACTCCAAGACGACCATCGGGGTGGAGTTTGCCACGCGC
TCCGTCCCCATCCAGGGCAAGACCATCAAGGCGCAGATCTGGGACACGGC
CGGGCAGGAGCGCTACCGCGCCATCACGTCGGCGTACTACCGCGGCGCCG
TGGGCGCGCTGCTGGTGTACGACATCACCAAGCGCAACACGTTTGAGAGC
GTGGGGCGCTGGCTCAAGGAGCTCAAGGACCACGCCGACGCCAAGATCGT
GGTGATGCTGGTGGGCAACAAGTGCGACCTGCGCGCCGAGCGGCAGGTGT
CGGTGGAGGACGGCACGGCGGCCGCGGCCAAGTTCGGCCTCAGCTTCCTG
GAGACGTCGGCGCTGGACGCCACCAACGTGGACGAGAGCTTCAAGCAGGT
GCTGCAGCAGATCCACAACGTGACCACGTCCAACGTGGTGTCGGGCGCCA
TTGGCGAGCACGCGCCCGACCCGCACGGCGAGCCCATCAAGCTGGAGGCG
CTGCCGTCGAGGAAGAGCGCCGCGCgcggcggcggcagcagcagcagcaA
GTGCTGTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:303106..303865+

>Gvermi7956.t1 ID=Gvermi7956.t1|Name=Gvermi7956.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=663bp|location=Sequence derived from alignment at ScGOVlb_24226:303106..303865+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCGCAACGAGGACGAGTACGACTACCTGTTCAAGATCGTGCTGAT
AGGGGACAGCGGGGTGGGCAAGAGCAACCTGCTGCTGCGCTTCACGCGCA
ACGAGGTGGACCTCAACTCCAAGACGACCATCGGGGTGGAGTTTGCCACG
CGCTCCGTCCCCATCCAGGGCAAGACCATCAAGGCGCAGATCTGGGACAC
GGCCGGGCAGGAGCGCTACCGCGCCATCACGTCGGCGTACTACCGCGGCG
CCGTGGGCGCGCTGCTGGTGTACGACATCACCAAGCGCAACACGTTTGAG
AGCGTGGGGCGCTGGCTCAAGGAGCTCAAGGACCACGCCGACGCCAAGAT
CGTGGTGATGCTGGTGGGCAACAAGTGCGACCTGCGCGCCGAGCGGCAGG
TGTCGGTGGAGGACGGCACGGCGGCCGCGGCCAAGTTCGGCCTCAGCTTC
CTGGAGACGTCGGCGCTGGACGCCACCAACGTGGACGAGAGCTTCAAGCA
GGTGCTGCAGCAGATCCACAACGTGACCACGTCCAACGTGGTGTCGGGCG
CCATTGGCGAGCACGCGCCCGACCCGCACGGCGAGCCCATCAAGCTGGAG
GCGCTGCCGTCGAGGAAGAGCGCCGCGCgcggcggcggcagcagcagcag
caAGTGCTGTTAG
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