Gvermi8022.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8022.t1
Unique NameGvermi8022.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:679760..681271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8022Gvermi8022Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 679760..681271 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8022.t1.start1Gvermi8022.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 679760..679762 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8022.t1.CDS1Gvermi8022.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 679760..681271 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8022.t1.exon1Gvermi8022.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 679760..681271 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8022.t1.stop1Gvermi8022.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 681269..681271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8022.t1Gvermi8022.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 679760..681271 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8022.t1 ID=Gvermi8022.t1|Name=Gvermi8022.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=504bp
MLNPSFKQKKCAALPADAWRQVASHLSTADLANLSQVSIACRTAALSPDL
FAKHLRCQPPSDLLSTTSYETIYQHSKSMQHVPIPTTVRSPAYKRVNVGI
LGSVSSYLILYDQSEGSVSCPSVGWRRNISELLLGEWGIRLQSSLLSAAS
CGQTSPFPPHAFVAKRFLEMPHCKAGFFCNGGKSFGGNLLTICARTGKTI
DQVFLPANEAHTGIEFLTGSENPKLALLGGINSQYLVYFTHKSFNIMHRS
TGTIVNKWSRMPESLLIRGETSFNAPLITGVVACDTGENEKNYHIHLLEG
GASEYSFSIDSKDELIDVTRSRDGRTITKRISSEGIVKLWTVVQRNAMFH
WLQGLRASNKSGEVEMRSNGTQVFMRPRGGDGRIIRFTYGSFVREDKIAR
RVQGMSFDWARASWDGRVVLAVSRKGGFISIFDCDEGRCLKSVSIGDELD
DLILVDGHMLVCLTHKDIIECHFNRFCQCLGAFPVHCESGETKVESNDKN
SGR*
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spliced messenger RNA

>Gvermi8022.t1 ID=Gvermi8022.t1|Name=Gvermi8022.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at ScGOVlb_24226:679760..681271+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTAATCCGAGTTTCAAGCAAAAGAAATGTGCAGCTCTTCCAGCCGA
TGCTTGGCGCCAAGTGGCATCCCACCTTTCCACAGCAGACCTCGCCAATC
TATCTCAGGTCTCTATCGCATGCAGAACCGCTGCCCTATCTCCAGATTTA
TTCGCAAAACACCTGCGTTGCCAACCTCCATCTGACTTGCTTTCAACTAC
AAGTTATGAAACCATATACCAACACTCAAAGTCAATGCAACATGTTCCGA
TTCCCACTACAGTACGTTCTCCTGCGTACAAACGAGTCAATGTGGGCATC
CTAGGCTCTGTTTCAAGCTATCTCATTCTATACGACCAATCTGAGGGATC
TGTTTCTTGTCCTTCTGTTGGGTGGCGCCGAAATATTTCTGAGCTTCTTT
TAGGAGAGTGGGGTATCAGGTTGCAGTCCTCACTGCTATCAGCAGCATCC
TGTGGCCAAACTTCACCCTTTCCTCCACATGCGTTTGTCGCAAAGAGGTT
TCTGGAAATGCCGCATTGCAAAGCTGGTTTTTTTTGTAACGGTGGCAAAA
GTTTCGGCGGGAACTTGCTCACAATCTGTGCAAGAACAGGGAAGACCATA
GACCAAGTTTTCCTCCCTGCCAATGAAGCTCACACGGGCATCGAATTTTT
GACTGGCTCCGAAAACCCAAAACTCGCTCTCCTTGGAGGCATTAACTCAC
AGTACTTAGTCTACTTTACTCATAAGTCTTTCAATATTATGCACCGAAGC
ACTGGAACCATAGTTAATAAATGGTCCAGAATGCCCGAGAGTTTGTTAAT
AAGAGGGGAGACGTCGTTTAACGCGCCATTGATAACAGGAGTTGTTGCAT
GCGATACCGGAGAAAATGAGAAAAATTATCACATACACCTGCTCGAGGGT
GGAGCTTCAGAGTACAGTTTCAGTATTGATTCCAAAGATGAGCTTATTGA
TGTAACACGAAGTCGTGACGGAAGAACAATAACGAAACGAATATCAAGTG
AAGGCATAGTAAAGCTGTGGACAGTCGTCCAGCGCAATGCTATGTTTCAT
TGGCTGCAGGGACTTCGTGCGAGCAACAAGTCAGGAGAAGTCGAAATGAG
ATCTAACGGCACTCAGGTGTTCATGAGACCCAGAGGAGGTGATGGTCGAA
TCATAAGATTCACCTACGGATCTTTTGTTCGAGAGGACAAGATAGCAAGG
CGGGTACAAGGTATGAGTTTTGACTGGGCTAGAGCCAGTTGGGATGGCAG
AGTTGTTCTAGCAGTGAGTCGCAAAGGTGGGTTCATCAGCATATTCGACT
GTGATGAAGGACGCTGTCTGAAGAGCGTTTCTATTGGTGATGAACTGGAC
GATTTGATCCTTGTCGACGGACATATGCTGGTTTGCCTCACACACAAAGA
TATCATTGAATGCCATTTCAATCGCTTCTGTCAATGTCTCGGGGCTTTTC
CAGTACATTGTGAATCGGGAGAAACCAAGGTTGAATCGAATGACAAAAAT
TCGGGCAGATAA
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protein sequence of Gvermi8022.t1

>Gvermi8022.t1 ID=Gvermi8022.t1|Name=Gvermi8022.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=504bp
MLNPSFKQKKCAALPADAWRQVASHLSTADLANLSQVSIACRTAALSPDL
FAKHLRCQPPSDLLSTTSYETIYQHSKSMQHVPIPTTVRSPAYKRVNVGI
LGSVSSYLILYDQSEGSVSCPSVGWRRNISELLLGEWGIRLQSSLLSAAS
CGQTSPFPPHAFVAKRFLEMPHCKAGFFCNGGKSFGGNLLTICARTGKTI
DQVFLPANEAHTGIEFLTGSENPKLALLGGINSQYLVYFTHKSFNIMHRS
TGTIVNKWSRMPESLLIRGETSFNAPLITGVVACDTGENEKNYHIHLLEG
GASEYSFSIDSKDELIDVTRSRDGRTITKRISSEGIVKLWTVVQRNAMFH
WLQGLRASNKSGEVEMRSNGTQVFMRPRGGDGRIIRFTYGSFVREDKIAR
RVQGMSFDWARASWDGRVVLAVSRKGGFISIFDCDEGRCLKSVSIGDELD
DLILVDGHMLVCLTHKDIIECHFNRFCQCLGAFPVHCESGETKVESNDKN
SGR*
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mRNA from alignment at ScGOVlb_24226:679760..681271+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8022.t1 ID=Gvermi8022.t1|Name=Gvermi8022.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at ScGOVlb_24226:679760..681271+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTAATCCGAGTTTCAAGCAAAAGAAATGTGCAGCTCTTCCAGCCGA
TGCTTGGCGCCAAGTGGCATCCCACCTTTCCACAGCAGACCTCGCCAATC
TATCTCAGGTCTCTATCGCATGCAGAACCGCTGCCCTATCTCCAGATTTA
TTCGCAAAACACCTGCGTTGCCAACCTCCATCTGACTTGCTTTCAACTAC
AAGTTATGAAACCATATACCAACACTCAAAGTCAATGCAACATGTTCCGA
TTCCCACTACAGTACGTTCTCCTGCGTACAAACGAGTCAATGTGGGCATC
CTAGGCTCTGTTTCAAGCTATCTCATTCTATACGACCAATCTGAGGGATC
TGTTTCTTGTCCTTCTGTTGGGTGGCGCCGAAATATTTCTGAGCTTCTTT
TAGGAGAGTGGGGTATCAGGTTGCAGTCCTCACTGCTATCAGCAGCATCC
TGTGGCCAAACTTCACCCTTTCCTCCACATGCGTTTGTCGCAAAGAGGTT
TCTGGAAATGCCGCATTGCAAAGCTGGTTTTTTTTGTAACGGTGGCAAAA
GTTTCGGCGGGAACTTGCTCACAATCTGTGCAAGAACAGGGAAGACCATA
GACCAAGTTTTCCTCCCTGCCAATGAAGCTCACACGGGCATCGAATTTTT
GACTGGCTCCGAAAACCCAAAACTCGCTCTCCTTGGAGGCATTAACTCAC
AGTACTTAGTCTACTTTACTCATAAGTCTTTCAATATTATGCACCGAAGC
ACTGGAACCATAGTTAATAAATGGTCCAGAATGCCCGAGAGTTTGTTAAT
AAGAGGGGAGACGTCGTTTAACGCGCCATTGATAACAGGAGTTGTTGCAT
GCGATACCGGAGAAAATGAGAAAAATTATCACATACACCTGCTCGAGGGT
GGAGCTTCAGAGTACAGTTTCAGTATTGATTCCAAAGATGAGCTTATTGA
TGTAACACGAAGTCGTGACGGAAGAACAATAACGAAACGAATATCAAGTG
AAGGCATAGTAAAGCTGTGGACAGTCGTCCAGCGCAATGCTATGTTTCAT
TGGCTGCAGGGACTTCGTGCGAGCAACAAGTCAGGAGAAGTCGAAATGAG
ATCTAACGGCACTCAGGTGTTCATGAGACCCAGAGGAGGTGATGGTCGAA
TCATAAGATTCACCTACGGATCTTTTGTTCGAGAGGACAAGATAGCAAGG
CGGGTACAAGGTATGAGTTTTGACTGGGCTAGAGCCAGTTGGGATGGCAG
AGTTGTTCTAGCAGTGAGTCGCAAAGGTGGGTTCATCAGCATATTCGACT
GTGATGAAGGACGCTGTCTGAAGAGCGTTTCTATTGGTGATGAACTGGAC
GATTTGATCCTTGTCGACGGACATATGCTGGTTTGCCTCACACACAAAGA
TATCATTGAATGCCATTTCAATCGCTTCTGTCAATGTCTCGGGGCTTTTC
CAGTACATTGTGAATCGGGAGAAACCAAGGTTGAATCGAATGACAAAAAT
TCGGGCAGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:679760..681271+

>Gvermi8022.t1 ID=Gvermi8022.t1|Name=Gvermi8022.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1512bp|location=Sequence derived from alignment at ScGOVlb_24226:679760..681271+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTAATCCGAGTTTCAAGCAAAAGAAATGTGCAGCTCTTCCAGCCGA
TGCTTGGCGCCAAGTGGCATCCCACCTTTCCACAGCAGACCTCGCCAATC
TATCTCAGGTCTCTATCGCATGCAGAACCGCTGCCCTATCTCCAGATTTA
TTCGCAAAACACCTGCGTTGCCAACCTCCATCTGACTTGCTTTCAACTAC
AAGTTATGAAACCATATACCAACACTCAAAGTCAATGCAACATGTTCCGA
TTCCCACTACAGTACGTTCTCCTGCGTACAAACGAGTCAATGTGGGCATC
CTAGGCTCTGTTTCAAGCTATCTCATTCTATACGACCAATCTGAGGGATC
TGTTTCTTGTCCTTCTGTTGGGTGGCGCCGAAATATTTCTGAGCTTCTTT
TAGGAGAGTGGGGTATCAGGTTGCAGTCCTCACTGCTATCAGCAGCATCC
TGTGGCCAAACTTCACCCTTTCCTCCACATGCGTTTGTCGCAAAGAGGTT
TCTGGAAATGCCGCATTGCAAAGCTGGTTTTTTTTGTAACGGTGGCAAAA
GTTTCGGCGGGAACTTGCTCACAATCTGTGCAAGAACAGGGAAGACCATA
GACCAAGTTTTCCTCCCTGCCAATGAAGCTCACACGGGCATCGAATTTTT
GACTGGCTCCGAAAACCCAAAACTCGCTCTCCTTGGAGGCATTAACTCAC
AGTACTTAGTCTACTTTACTCATAAGTCTTTCAATATTATGCACCGAAGC
ACTGGAACCATAGTTAATAAATGGTCCAGAATGCCCGAGAGTTTGTTAAT
AAGAGGGGAGACGTCGTTTAACGCGCCATTGATAACAGGAGTTGTTGCAT
GCGATACCGGAGAAAATGAGAAAAATTATCACATACACCTGCTCGAGGGT
GGAGCTTCAGAGTACAGTTTCAGTATTGATTCCAAAGATGAGCTTATTGA
TGTAACACGAAGTCGTGACGGAAGAACAATAACGAAACGAATATCAAGTG
AAGGCATAGTAAAGCTGTGGACAGTCGTCCAGCGCAATGCTATGTTTCAT
TGGCTGCAGGGACTTCGTGCGAGCAACAAGTCAGGAGAAGTCGAAATGAG
ATCTAACGGCACTCAGGTGTTCATGAGACCCAGAGGAGGTGATGGTCGAA
TCATAAGATTCACCTACGGATCTTTTGTTCGAGAGGACAAGATAGCAAGG
CGGGTACAAGGTATGAGTTTTGACTGGGCTAGAGCCAGTTGGGATGGCAG
AGTTGTTCTAGCAGTGAGTCGCAAAGGTGGGTTCATCAGCATATTCGACT
GTGATGAAGGACGCTGTCTGAAGAGCGTTTCTATTGGTGATGAACTGGAC
GATTTGATCCTTGTCGACGGACATATGCTGGTTTGCCTCACACACAAAGA
TATCATTGAATGCCATTTCAATCGCTTCTGTCAATGTCTCGGGGCTTTTC
CAGTACATTGTGAATCGGGAGAAACCAAGGTTGAATCGAATGACAAAAAT
TCGGGCAGATAA
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