Gvermi8032.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8032.t1
Unique Name	Gvermi8032.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	672

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:763668..765683 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709038.1
Preferred name	KIAA1161
PFAMs	Glyco_hydro_31
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00028,RC00049,RC00077
KEGG ko	ko:K01187
KEGG Reaction	R00028,R00801,R00802,R06087,R06088
KEGG Pathway	ko00052,ko00500,ko01100,map00052,map00500,map01100
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005789,GO:0007275,GO:0007517,GO:0007519,GO:0008150,GO:0009888,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0012505,GO:0014706,GO:0014902,GO:0014904,GO:0016020,GO:0023051,GO:0023056,GO:0030154,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0032501,GO:0032502,GO:0042175,GO:0042692,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048741,GO:0048747,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051146,GO:0051896,GO:0051897,GO:0055001,GO:0055002,GO:0060537,GO:0060538,GO:0061061,GO:0065007,GO:0098827,GO:1902531,GO:1902533
Evalue	2.54e-148
EggNOG OGs	COG1501@1\|root,KOG1065@2759\|Eukaryota
EC	3.2.1.20
Description	alpha-1,4-glucosidase activity
COG category	G
CAZy	GH31
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8032	Gvermi8032	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 763668..765683 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8032.t1.start1	Gvermi8032.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 763668..763670 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8032.t1.CDS1	Gvermi8032.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 763668..765683 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8032.t1.exon1	Gvermi8032.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 763668..765683 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8032.t1.stop1	Gvermi8032.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 765681..765683 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8032.t1	Gvermi8032.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 763668..765683 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:763668..765683+
coding sequence from alignment at ScGOVlb_24226:763668..765683+

mRNA sequence

>Gvermi8032.t1 ID=Gvermi8032.t1|Name=Gvermi8032.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=672bp
MFEAPEELTITSPDGVCKLQVSLVFDNPTLTLIHKTRHLVTTTVSLPALT
FPDRPFLTIDAKTDTHCFSQQDTGLYITPIAPSSFRVNAFTTTETVTARI
PIASENWFGLGHLMHQHWPLNRARLEHGPFYPFDNGPNGICTLLEPTLYS
SHGVAVHVDDRSSCFHLAFNGTPRHELSSKPLCWGTGVANFTRDILPFAD
DGKGDGTITLQSRARYDWPHVRHPWLSSTSLPNSPNLIFTLTGSKNVKEA
CEKGLRSIQTAFGSREMPSAGLLQDPIWSTWARFKAEVTQRDVIAFAKEI
VQRGLPRSVMGIDDRWSTKYGDFQFDSEKFPDPKAMVDQLHNLGFLVTLW
VTPFADLDSVAVTSEETAKFFVKTRNGQVGSFAWWQPTKVAAINLSDLRA
RVWITNRLRRLMEDYGIDGFKFDAGEPSFLPEDAAVQDILESPNEYTRSW
IKHIVPIARVSEVRAGVRGCQNVPTLFRLFDRFSTWNLQNGLASVLAALL
TAGILGYPFCIPDYIAGNAYGDEVPCEELMIRWAQASVAMPALQFSIPPW
QFGNKCDRLCQEALKWRQKFFWKYIRRYLRSAAENYTPICRPMWWIRGPE
DIYDQFLIGNDVIVAPVVTKGQRRRNVFIPHGFWKRVDLMTGTATGKRIK
GPAWYYDVSADLHEMPTYVRG*

spliced messenger RNA

>Gvermi8032.t1 ID=Gvermi8032.t1|Name=Gvermi8032.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2016bp|location=Sequence derived from alignment at ScGOVlb_24226:763668..765683+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGAGGCTCCGGAGGAATTGACGATAACCAGCCCCGATGGTGTCTG
CAAGCTTCAGGTATCCTTGGTCTTCGATAATCCGACACTAACGCTCATTC
ATAAGACCCGGCACCTCGTCACTACCACGGTTTCGCTTCCTGCATTGACC
TTTCCGGATCGCCCGTTTCTGACTATTGATGCCAAGACAGACACCCATTG
TTTTTCCCAGCAAGACACAGGCCTCTACATCACTCCAATAGCCCCATCAT
CTTTTCGCGTGAACGCATTTACCACCACTGAAACGGTTACCGCCCGAATA
CCGATTGCCAGTGAAAACTGGTTCGGTTTAGGTCATCTAATGCACCAGCA
TTGGCCTTTGAACCGAGCTAGACTGGAACATGGTCCTTTCTACCCGTTCG
ATAACGGCCCTAACGGAATATGTACTCTACTGGAACCGACGTTGTATAGC
TCCCACGGAGTGGCTGTTCACGTTGATGATCGAAGCTCATGTTTTCATTT
AGCCTTTAATGGTACTCCTAGACATGAGTTGTCGTCCAAGCCGTTATGCT
GGGGAACAGGGGTTGCTAACTTCACGCGGGACATTTTGCCGTTCGCTGAC
GACGGAAAAGGAGATGGTACCATCACGCTTCAAAGCCGTGCCAGATACGA
CTGGCCGCATGTACGACACCCGTGGCTTTCTTCTACATCCCTGCCAAACT
CCCCAAATTTGATTTTCACTCTTACGGGAAGCAAAAATGTCAAGGAAGCT
TGTGAGAAAGGTTTACGTAGCATTCAAACCGCATTCGGTTCTCGAGAAAT
GCCGAGCGCTGGCCTGTTACAAGATCCTATATGGAGTACTTGGGCGCGGT
TTAAGGCTGAAGTTACTCAGAGAGATGTGATAGCTTTTGCAAAAGAAATT
GTCCAACGTGGTTTGCCTCGTTCTGTTATGGGTATTGACGATAGATGGAG
CACTAAGTATGGAGACTTTCAATTTGATTCCGAGAAGTTTCCGGACCCGA
AAGCCATGGTTGACCAGCTTCACAACTTGGGCTTCCTCGTCACTCTGTGG
GTAACTCCATTCGCCGATTTGGATTCCGTGGCTGTCACATCTGAGGAAAC
GGCAAAGTTTTTTGTAAAGACCCGCAACGGACAAGTAGGCAGTTTTGCAT
GGTGGCAACCAACCAAGGTTGCCGCTATAAATCTGTCTGATCTTCGCGCC
AGGGTTTGGATCACAAATCGGCTTCGTAGATTAATGGAGGACTACGGGAT
CGACGGTTTCAAGTTTGATGCCGGTGAGCCAAGCTTTTTACCCGAGGATG
CCGCAGTTCAAGATATTCTCGAATCTCCCAATGAATACACACGATCCTGG
ATTAAACACATAGTTCCAATTGCGCGTGTGTCAGAAGTAAGGGCAGGCGT
TCGAGGATGTCAAAATGTACCAACTTTGTTCAGGTTATTTGATCGTTTCT
CAACGTGGAATCTACAAAATGGTCTGGCAAGTGTTTTAGCTGCACTTCTC
ACTGCCGGGATCCTCGGTTATCCTTTCTGCATCCCAGACTACATCGCTGG
GAACGCGTATGGTGACGAAGTTCCATGCGAGGAACTGATGATTCGCTGGG
CGCAGGCAAGCGTTGCCATGCCAGCGTTACAATTCAGTATACCTCCATGG
CAGTTTGGGAACAAATGTGACCGGCTCTGTCAGGAAGCTTTGAAATGGAG
GCAAAAGTTCTTCTGGAAGTATATCAGACGATACCTGAGAAGTGCTGCGG
AGAACTACACACCTATCTGTCGTCCCATGTGGTGGATCAGGGGCCCAGAG
GATATTTATGATCAGTTCCTCATTGGAAATGATGTGATTGTGGCGCCGGT
CGTCACTAAGGGTCAGAGGCGACGGAATGTTTTCATTCCACATGGCTTCT
GGAAAAGGGTTGACCTGATGACTGGAACGGCTACAGGTAAACGCATAAAG
GGTCCTGCTTGGTACTACGACGTCAGCGCTGATCTTCATGAGATGCCCAC
TTACGTACGTGGCTAG

protein sequence of Gvermi8032.t1

>Gvermi8032.t1 ID=Gvermi8032.t1|Name=Gvermi8032.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=672bp
MFEAPEELTITSPDGVCKLQVSLVFDNPTLTLIHKTRHLVTTTVSLPALT
FPDRPFLTIDAKTDTHCFSQQDTGLYITPIAPSSFRVNAFTTTETVTARI
PIASENWFGLGHLMHQHWPLNRARLEHGPFYPFDNGPNGICTLLEPTLYS
SHGVAVHVDDRSSCFHLAFNGTPRHELSSKPLCWGTGVANFTRDILPFAD
DGKGDGTITLQSRARYDWPHVRHPWLSSTSLPNSPNLIFTLTGSKNVKEA
CEKGLRSIQTAFGSREMPSAGLLQDPIWSTWARFKAEVTQRDVIAFAKEI
VQRGLPRSVMGIDDRWSTKYGDFQFDSEKFPDPKAMVDQLHNLGFLVTLW
VTPFADLDSVAVTSEETAKFFVKTRNGQVGSFAWWQPTKVAAINLSDLRA
RVWITNRLRRLMEDYGIDGFKFDAGEPSFLPEDAAVQDILESPNEYTRSW
IKHIVPIARVSEVRAGVRGCQNVPTLFRLFDRFSTWNLQNGLASVLAALL
TAGILGYPFCIPDYIAGNAYGDEVPCEELMIRWAQASVAMPALQFSIPPW
QFGNKCDRLCQEALKWRQKFFWKYIRRYLRSAAENYTPICRPMWWIRGPE
DIYDQFLIGNDVIVAPVVTKGQRRRNVFIPHGFWKRVDLMTGTATGKRIK
GPAWYYDVSADLHEMPTYVRG*

mRNA from alignment at ScGOVlb_24226:763668..765683+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8032.t1 ID=Gvermi8032.t1|Name=Gvermi8032.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2016bp|location=Sequence derived from alignment at ScGOVlb_24226:763668..765683+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTGAGGCTCCGGAGGAATTGACGATAACCAGCCCCGATGGTGTCTG
CAAGCTTCAGGTATCCTTGGTCTTCGATAATCCGACACTAACGCTCATTC
ATAAGACCCGGCACCTCGTCACTACCACGGTTTCGCTTCCTGCATTGACC
TTTCCGGATCGCCCGTTTCTGACTATTGATGCCAAGACAGACACCCATTG
TTTTTCCCAGCAAGACACAGGCCTCTACATCACTCCAATAGCCCCATCAT
CTTTTCGCGTGAACGCATTTACCACCACTGAAACGGTTACCGCCCGAATA
CCGATTGCCAGTGAAAACTGGTTCGGTTTAGGTCATCTAATGCACCAGCA
TTGGCCTTTGAACCGAGCTAGACTGGAACATGGTCCTTTCTACCCGTTCG
ATAACGGCCCTAACGGAATATGTACTCTACTGGAACCGACGTTGTATAGC
TCCCACGGAGTGGCTGTTCACGTTGATGATCGAAGCTCATGTTTTCATTT
AGCCTTTAATGGTACTCCTAGACATGAGTTGTCGTCCAAGCCGTTATGCT
GGGGAACAGGGGTTGCTAACTTCACGCGGGACATTTTGCCGTTCGCTGAC
GACGGAAAAGGAGATGGTACCATCACGCTTCAAAGCCGTGCCAGATACGA
CTGGCCGCATGTACGACACCCGTGGCTTTCTTCTACATCCCTGCCAAACT
CCCCAAATTTGATTTTCACTCTTACGGGAAGCAAAAATGTCAAGGAAGCT
TGTGAGAAAGGTTTACGTAGCATTCAAACCGCATTCGGTTCTCGAGAAAT
GCCGAGCGCTGGCCTGTTACAAGATCCTATATGGAGTACTTGGGCGCGGT
TTAAGGCTGAAGTTACTCAGAGAGATGTGATAGCTTTTGCAAAAGAAATT
GTCCAACGTGGTTTGCCTCGTTCTGTTATGGGTATTGACGATAGATGGAG
CACTAAGTATGGAGACTTTCAATTTGATTCCGAGAAGTTTCCGGACCCGA
AAGCCATGGTTGACCAGCTTCACAACTTGGGCTTCCTCGTCACTCTGTGG
GTAACTCCATTCGCCGATTTGGATTCCGTGGCTGTCACATCTGAGGAAAC
GGCAAAGTTTTTTGTAAAGACCCGCAACGGACAAGTAGGCAGTTTTGCAT
GGTGGCAACCAACCAAGGTTGCCGCTATAAATCTGTCTGATCTTCGCGCC
AGGGTTTGGATCACAAATCGGCTTCGTAGATTAATGGAGGACTACGGGAT
CGACGGTTTCAAGTTTGATGCCGGTGAGCCAAGCTTTTTACCCGAGGATG
CCGCAGTTCAAGATATTCTCGAATCTCCCAATGAATACACACGATCCTGG
ATTAAACACATAGTTCCAATTGCGCGTGTGTCAGAAGTAAGGGCAGGCGT
TCGAGGATGTCAAAATGTACCAACTTTGTTCAGGTTATTTGATCGTTTCT
CAACGTGGAATCTACAAAATGGTCTGGCAAGTGTTTTAGCTGCACTTCTC
ACTGCCGGGATCCTCGGTTATCCTTTCTGCATCCCAGACTACATCGCTGG
GAACGCGTATGGTGACGAAGTTCCATGCGAGGAACTGATGATTCGCTGGG
CGCAGGCAAGCGTTGCCATGCCAGCGTTACAATTCAGTATACCTCCATGG
CAGTTTGGGAACAAATGTGACCGGCTCTGTCAGGAAGCTTTGAAATGGAG
GCAAAAGTTCTTCTGGAAGTATATCAGACGATACCTGAGAAGTGCTGCGG
AGAACTACACACCTATCTGTCGTCCCATGTGGTGGATCAGGGGCCCAGAG
GATATTTATGATCAGTTCCTCATTGGAAATGATGTGATTGTGGCGCCGGT
CGTCACTAAGGGTCAGAGGCGACGGAATGTTTTCATTCCACATGGCTTCT
GGAAAAGGGTTGACCTGATGACTGGAACGGCTACAGGTAAACGCATAAAG
GGTCCTGCTTGGTACTACGACGTCAGCGCTGATCTTCATGAGATGCCCAC
TTACGTACGTGGCTAG

Coding sequence (CDS) from alignment at ScGOVlb_24226:763668..765683+

>Gvermi8032.t1 ID=Gvermi8032.t1|Name=Gvermi8032.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2016bp|location=Sequence derived from alignment at ScGOVlb_24226:763668..765683+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTGAGGCTCCGGAGGAATTGACGATAACCAGCCCCGATGGTGTCTG
CAAGCTTCAGGTATCCTTGGTCTTCGATAATCCGACACTAACGCTCATTC
ATAAGACCCGGCACCTCGTCACTACCACGGTTTCGCTTCCTGCATTGACC
TTTCCGGATCGCCCGTTTCTGACTATTGATGCCAAGACAGACACCCATTG
TTTTTCCCAGCAAGACACAGGCCTCTACATCACTCCAATAGCCCCATCAT
CTTTTCGCGTGAACGCATTTACCACCACTGAAACGGTTACCGCCCGAATA
CCGATTGCCAGTGAAAACTGGTTCGGTTTAGGTCATCTAATGCACCAGCA
TTGGCCTTTGAACCGAGCTAGACTGGAACATGGTCCTTTCTACCCGTTCG
ATAACGGCCCTAACGGAATATGTACTCTACTGGAACCGACGTTGTATAGC
TCCCACGGAGTGGCTGTTCACGTTGATGATCGAAGCTCATGTTTTCATTT
AGCCTTTAATGGTACTCCTAGACATGAGTTGTCGTCCAAGCCGTTATGCT
GGGGAACAGGGGTTGCTAACTTCACGCGGGACATTTTGCCGTTCGCTGAC
GACGGAAAAGGAGATGGTACCATCACGCTTCAAAGCCGTGCCAGATACGA
CTGGCCGCATGTACGACACCCGTGGCTTTCTTCTACATCCCTGCCAAACT
CCCCAAATTTGATTTTCACTCTTACGGGAAGCAAAAATGTCAAGGAAGCT
TGTGAGAAAGGTTTACGTAGCATTCAAACCGCATTCGGTTCTCGAGAAAT
GCCGAGCGCTGGCCTGTTACAAGATCCTATATGGAGTACTTGGGCGCGGT
TTAAGGCTGAAGTTACTCAGAGAGATGTGATAGCTTTTGCAAAAGAAATT
GTCCAACGTGGTTTGCCTCGTTCTGTTATGGGTATTGACGATAGATGGAG
CACTAAGTATGGAGACTTTCAATTTGATTCCGAGAAGTTTCCGGACCCGA
AAGCCATGGTTGACCAGCTTCACAACTTGGGCTTCCTCGTCACTCTGTGG
GTAACTCCATTCGCCGATTTGGATTCCGTGGCTGTCACATCTGAGGAAAC
GGCAAAGTTTTTTGTAAAGACCCGCAACGGACAAGTAGGCAGTTTTGCAT
GGTGGCAACCAACCAAGGTTGCCGCTATAAATCTGTCTGATCTTCGCGCC
AGGGTTTGGATCACAAATCGGCTTCGTAGATTAATGGAGGACTACGGGAT
CGACGGTTTCAAGTTTGATGCCGGTGAGCCAAGCTTTTTACCCGAGGATG
CCGCAGTTCAAGATATTCTCGAATCTCCCAATGAATACACACGATCCTGG
ATTAAACACATAGTTCCAATTGCGCGTGTGTCAGAAGTAAGGGCAGGCGT
TCGAGGATGTCAAAATGTACCAACTTTGTTCAGGTTATTTGATCGTTTCT
CAACGTGGAATCTACAAAATGGTCTGGCAAGTGTTTTAGCTGCACTTCTC
ACTGCCGGGATCCTCGGTTATCCTTTCTGCATCCCAGACTACATCGCTGG
GAACGCGTATGGTGACGAAGTTCCATGCGAGGAACTGATGATTCGCTGGG
CGCAGGCAAGCGTTGCCATGCCAGCGTTACAATTCAGTATACCTCCATGG
CAGTTTGGGAACAAATGTGACCGGCTCTGTCAGGAAGCTTTGAAATGGAG
GCAAAAGTTCTTCTGGAAGTATATCAGACGATACCTGAGAAGTGCTGCGG
AGAACTACACACCTATCTGTCGTCCCATGTGGTGGATCAGGGGCCCAGAG
GATATTTATGATCAGTTCCTCATTGGAAATGATGTGATTGTGGCGCCGGT
CGTCACTAAGGGTCAGAGGCGACGGAATGTTTTCATTCCACATGGCTTCT
GGAAAAGGGTTGACCTGATGACTGGAACGGCTACAGGTAAACGCATAAAG
GGTCCTGCTTGGTACTACGACGTCAGCGCTGATCTTCATGAGATGCCCAC
TTACGTACGTGGCTAG