Gvermi8072.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8072.t1
Unique Name	Gvermi8072.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	406

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:930818..932035 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704692.1
PFAMs	GYR,YLP
Max annot lvl	2759\|Eukaryota
GOs	GO:0003674,GO:0005488,GO:0005515
Evalue	9.19e-26
EggNOG OGs	2CKD8@1\|root,2QVCG@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8072	Gvermi8072	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 930818..932035 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8072.t1.start1	Gvermi8072.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 930818..930820 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8072.t1.CDS1	Gvermi8072.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 930818..932035 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8072.t1.exon1	Gvermi8072.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 930818..932035 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8072.t1.stop1	Gvermi8072.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 932033..932035 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8072.t1	Gvermi8072.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 930818..932035 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:930818..932035+
coding sequence from alignment at ScGOVlb_24226:930818..932035+

mRNA sequence

>Gvermi8072.t1 ID=Gvermi8072.t1|Name=Gvermi8072.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=406bp
MTRRLYVFFLLAFALLVSAWGEEEIDLQSLSSAQLSELEKKLNGEVADRS
KELDTVRQEINRLKDEQAAVDEEAQHLQGAKEWELKEKEKREKELEAAKN
DVLAKQESIARMSTQVASLKDHIQQFESRLQLLNQEKDSTEKRFHDPTLA
DVLESRSQNWGNVSRNLFNKTMTDVVPMFSDLSATARTYRRRVSRTSKFF
ELLTSLFIYAFMILAAVSVYRIYSKVRGKLTIARLLFLGDIFCACFWLVM
LICFLILFDDPLYVMKHRFSTAFFLFQLIACFSYVNFVLLRVLVLASKMT
LGALGETLGVVVVGHHYYVRVWQPAMLDRPFRGNFFYYFCYCWMFSAFAY
SRIQEFAPLKQLRGPKLPPLMWLRVLFARFTARGVPDGDIENTPYEDSDD
EGHER*

spliced messenger RNA

>Gvermi8072.t1 ID=Gvermi8072.t1|Name=Gvermi8072.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at ScGOVlb_24226:930818..932035+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACGCCGGCTCTATGTCTTCTTTCTGCTTGCGTTCGCGCTTCTTGT
TTCCGCATGGGGCGAAGAAGAAATTGACCTGCAGAGCCTGTCATCTGCGC
AGCTGTCTGAATTAGAGAAGAAGCTCAACGGAGAGGTTGCTGATCGCTCC
AAAGAACTCGACACCGTTCGCCAAGAAATCAACCGACTGAAGGACGAGCA
GGCCGCCGTTGATGAAGAAGCGCAGCATTTGCAAGGCGCCAAGGAGTGGG
AACTCAAGGAGAAGGAGAAGCGCGAGAAGGAGCTGGAAGCTGCAAAGAAC
GATGTGTTGGCCAAGCAGGAGTCTATCGCCAGAATGTCGACGCAGGTCGC
CTCTCTGAAGGACCATATCCAGCAATTTGAATCCCGTCTTCAACTTCTCA
ATCAAGAGAAGGACTCAACCGAGAAGCGGTTCCACGATCCAACACTCGCC
GATGTACTGGAGTCGCGTTCTCAAAATTGGGGCAACGTGTCGCGAAATCT
CTTCAACAAGACCATGACTGACGTCGTGCCCATGTTCTCCGACCTCTCCG
CAACAGCACGTACCTATCGCCGCCGCGTATCCAGAACCTCAAAGTTCTTC
GAGCTGCTCACCTCTTTGTTTATATACGCGTTCATGATCCTTGCAGCCGT
TTCAGTGTACAGAATATATTCAAAAGTCCGCGGAAAGCTCACTATTGCAC
GATTGCTGTTTTTGGGCGATATCTTTTGTGCCTGCTTTTGGCTTGTTATG
CTCATTTGTTTCCTCATTCTGTTCGATGATCCTCTCTATGTTATGAAACA
CCGATTCTCCACAGCCTTCTTTCTGTTTCAGTTGATCGCATGCTTTTCGT
ACGTCAACTTCGTTTTGCTTCGAGTTCTGGTGTTGGCATCCAAGATGACT
CTGGGTGCTCTTGGTGAGACCTTGGGTGTTGTCGTTGTTGGTCACCATTA
TTATGTCAGAGTGTGGCAACCAGCTATGCTTGACAGACCTTTCCGAGGCA
ACTTCTTTTACTACTTTTGTTACTGTTGGATGTTTAGTGCGTTCGCATAC
AGCAGAATCCAAGAATTTGCTCCTCTTAAGCAATTGAGAGGCCCAAAGCT
CCCCCCTCTCATGTGGCTTCGAGTACTGTTTGCAAGATTTACGGCACGAG
GCGTCCCAGACGGGGATATCGAGAACACCCCTTACGAAGATTCAGACGAC
GAAGGCCACGAGCGCTAA

protein sequence of Gvermi8072.t1

>Gvermi8072.t1 ID=Gvermi8072.t1|Name=Gvermi8072.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=406bp
MTRRLYVFFLLAFALLVSAWGEEEIDLQSLSSAQLSELEKKLNGEVADRS
KELDTVRQEINRLKDEQAAVDEEAQHLQGAKEWELKEKEKREKELEAAKN
DVLAKQESIARMSTQVASLKDHIQQFESRLQLLNQEKDSTEKRFHDPTLA
DVLESRSQNWGNVSRNLFNKTMTDVVPMFSDLSATARTYRRRVSRTSKFF
ELLTSLFIYAFMILAAVSVYRIYSKVRGKLTIARLLFLGDIFCACFWLVM
LICFLILFDDPLYVMKHRFSTAFFLFQLIACFSYVNFVLLRVLVLASKMT
LGALGETLGVVVVGHHYYVRVWQPAMLDRPFRGNFFYYFCYCWMFSAFAY
SRIQEFAPLKQLRGPKLPPLMWLRVLFARFTARGVPDGDIENTPYEDSDD
EGHER*

mRNA from alignment at ScGOVlb_24226:930818..932035+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8072.t1 ID=Gvermi8072.t1|Name=Gvermi8072.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at ScGOVlb_24226:930818..932035+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACACGCCGGCTCTATGTCTTCTTTCTGCTTGCGTTCGCGCTTCTTGT
TTCCGCATGGGGCGAAGAAGAAATTGACCTGCAGAGCCTGTCATCTGCGC
AGCTGTCTGAATTAGAGAAGAAGCTCAACGGAGAGGTTGCTGATCGCTCC
AAAGAACTCGACACCGTTCGCCAAGAAATCAACCGACTGAAGGACGAGCA
GGCCGCCGTTGATGAAGAAGCGCAGCATTTGCAAGGCGCCAAGGAGTGGG
AACTCAAGGAGAAGGAGAAGCGCGAGAAGGAGCTGGAAGCTGCAAAGAAC
GATGTGTTGGCCAAGCAGGAGTCTATCGCCAGAATGTCGACGCAGGTCGC
CTCTCTGAAGGACCATATCCAGCAATTTGAATCCCGTCTTCAACTTCTCA
ATCAAGAGAAGGACTCAACCGAGAAGCGGTTCCACGATCCAACACTCGCC
GATGTACTGGAGTCGCGTTCTCAAAATTGGGGCAACGTGTCGCGAAATCT
CTTCAACAAGACCATGACTGACGTCGTGCCCATGTTCTCCGACCTCTCCG
CAACAGCACGTACCTATCGCCGCCGCGTATCCAGAACCTCAAAGTTCTTC
GAGCTGCTCACCTCTTTGTTTATATACGCGTTCATGATCCTTGCAGCCGT
TTCAGTGTACAGAATATATTCAAAAGTCCGCGGAAAGCTCACTATTGCAC
GATTGCTGTTTTTGGGCGATATCTTTTGTGCCTGCTTTTGGCTTGTTATG
CTCATTTGTTTCCTCATTCTGTTCGATGATCCTCTCTATGTTATGAAACA
CCGATTCTCCACAGCCTTCTTTCTGTTTCAGTTGATCGCATGCTTTTCGT
ACGTCAACTTCGTTTTGCTTCGAGTTCTGGTGTTGGCATCCAAGATGACT
CTGGGTGCTCTTGGTGAGACCTTGGGTGTTGTCGTTGTTGGTCACCATTA
TTATGTCAGAGTGTGGCAACCAGCTATGCTTGACAGACCTTTCCGAGGCA
ACTTCTTTTACTACTTTTGTTACTGTTGGATGTTTAGTGCGTTCGCATAC
AGCAGAATCCAAGAATTTGCTCCTCTTAAGCAATTGAGAGGCCCAAAGCT
CCCCCCTCTCATGTGGCTTCGAGTACTGTTTGCAAGATTTACGGCACGAG
GCGTCCCAGACGGGGATATCGAGAACACCCCTTACGAAGATTCAGACGAC
GAAGGCCACGAGCGCTAA

Coding sequence (CDS) from alignment at ScGOVlb_24226:930818..932035+

>Gvermi8072.t1 ID=Gvermi8072.t1|Name=Gvermi8072.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1218bp|location=Sequence derived from alignment at ScGOVlb_24226:930818..932035+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACACGCCGGCTCTATGTCTTCTTTCTGCTTGCGTTCGCGCTTCTTGT
TTCCGCATGGGGCGAAGAAGAAATTGACCTGCAGAGCCTGTCATCTGCGC
AGCTGTCTGAATTAGAGAAGAAGCTCAACGGAGAGGTTGCTGATCGCTCC
AAAGAACTCGACACCGTTCGCCAAGAAATCAACCGACTGAAGGACGAGCA
GGCCGCCGTTGATGAAGAAGCGCAGCATTTGCAAGGCGCCAAGGAGTGGG
AACTCAAGGAGAAGGAGAAGCGCGAGAAGGAGCTGGAAGCTGCAAAGAAC
GATGTGTTGGCCAAGCAGGAGTCTATCGCCAGAATGTCGACGCAGGTCGC
CTCTCTGAAGGACCATATCCAGCAATTTGAATCCCGTCTTCAACTTCTCA
ATCAAGAGAAGGACTCAACCGAGAAGCGGTTCCACGATCCAACACTCGCC
GATGTACTGGAGTCGCGTTCTCAAAATTGGGGCAACGTGTCGCGAAATCT
CTTCAACAAGACCATGACTGACGTCGTGCCCATGTTCTCCGACCTCTCCG
CAACAGCACGTACCTATCGCCGCCGCGTATCCAGAACCTCAAAGTTCTTC
GAGCTGCTCACCTCTTTGTTTATATACGCGTTCATGATCCTTGCAGCCGT
TTCAGTGTACAGAATATATTCAAAAGTCCGCGGAAAGCTCACTATTGCAC
GATTGCTGTTTTTGGGCGATATCTTTTGTGCCTGCTTTTGGCTTGTTATG
CTCATTTGTTTCCTCATTCTGTTCGATGATCCTCTCTATGTTATGAAACA
CCGATTCTCCACAGCCTTCTTTCTGTTTCAGTTGATCGCATGCTTTTCGT
ACGTCAACTTCGTTTTGCTTCGAGTTCTGGTGTTGGCATCCAAGATGACT
CTGGGTGCTCTTGGTGAGACCTTGGGTGTTGTCGTTGTTGGTCACCATTA
TTATGTCAGAGTGTGGCAACCAGCTATGCTTGACAGACCTTTCCGAGGCA
ACTTCTTTTACTACTTTTGTTACTGTTGGATGTTTAGTGCGTTCGCATAC
AGCAGAATCCAAGAATTTGCTCCTCTTAAGCAATTGAGAGGCCCAAAGCT
CCCCCCTCTCATGTGGCTTCGAGTACTGTTTGCAAGATTTACGGCACGAG
GCGTCCCAGACGGGGATATCGAGAACACCCCTTACGAAGATTCAGACGAC
GAAGGCCACGAGCGCTAA