Gvermi7980.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7980.t2
Unique Name	Gvermi7980.t2
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	316

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:474335..475282 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707040.1
PFAMs	ADK,Dpy-30
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002
KEGG ko	ko:K00939,ko:K13800
KEGG Reaction	R00127,R00158,R00512,R01547,R01665,R11319,R11891,R11892
KEGG Pathway	ko00230,ko00240,ko00730,ko00983,ko01100,ko01110,ko01130,map00230,map00240,map00730,map00983,map01100,map01110,map01130
KEGG Module	M00049,M00052
Evalue	3.33e-86
EggNOG OGs	COG0563@1\|root,KOG3079@2759\|Eukaryota
EC	2.7.4.14,2.7.4.3
Description	cytidylate kinase activity
COG category	F
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7980	Gvermi7980	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 474137..475282 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7980.t2.start1	Gvermi7980.t2.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 474335..474337 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7980.t2.CDS1	Gvermi7980.t2.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 474335..475282 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7980.t2.exon1	Gvermi7980.t2.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 474335..475282 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7980.t2.stop1	Gvermi7980.t2.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 475280..475282 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7980.t2	Gvermi7980.t2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 474335..475282 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:474335..475282+
coding sequence from alignment at ScGOVlb_24226:474335..475282+

mRNA sequence

>Gvermi7980.t2 ID=Gvermi7980.t2|Name=Gvermi7980.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=316bp
MSSGPCVALILRKDDAIKSWREHMGPTNSEKARKEAPHSLRAKFGTDGSK
NATHGSDSPQSASREISFFFPTFQSASQFNGQDAKEYLTKTVTPVLTTAL
TEMCRLTPPNAVEWLGNYLLKSAGVAPMPAKPPARKIYFVLGGPGSGKGT
QCARLVEKLGFDHFSAGDLLRNEVASGSEQGKMIGDMIKEGQIVPGAITI
ALLKTAIEGSTAPGILIDGFPRQLDQAGAFEKDISDFEFVIFFDCPEKEM
ERRLLERGKTSGRTDDNTDAIHKRFNTFVNTSMPVIEYYEAKGKVHRIDA
TQSIETITGLVSKLF*

spliced messenger RNA

>Gvermi7980.t2 ID=Gvermi7980.t2|Name=Gvermi7980.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=948bp|location=Sequence derived from alignment at ScGOVlb_24226:474335..475282+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCCGGCCCATGCGTTGCGCTCATTCTCCGCAAGGATGACGCCAT
CAAGTCGTGGAGGGAGCATATGGGACCCACAAACTCTGAAAAGGCCCGCA
AGGAGGCGCCCCACTCCCTCCGCGCCAAGTTTGGCACGGATGGTAGTAAG
AACGCCACGCACGGCTCCGACTCCCCTCAAAGCGCTTCACGCGAGATTTC
GTTTTTCTTCCCCACGTTCCAATCCGCCTCCCAGTTCAACGGCCAGGACG
CCAAGGAGTACCTCACCAAGACTGTCACCCCGGTTCTCACGACGGCCCTG
ACGGAAATGTGCCGTCTCACCCCGCCGAATGCCGTCGAGTGGCTTGGCAA
TTACCTGCTCAAGTCCGCTGGCGTCGCGCCCATGCCCGCCAAGCCGCCAG
CGAGGAAGATATACTTTGTGCTCGGCGGCCCGGGCTCTGGAAAGGGCACG
CAGTGCGCCAGGCTTGTAGAGAAGCTTGGATTTGACCACTTTTCTGCGGG
CGACTTGCTGCGCAATGAGGTAGCCAGCGGTTCTGAGCAAGGGAAAATGA
TCGGCGATATGATCAAGGAAGGCCAGATTGTACCGGGCGCAATCACCATC
GCTTTGCTCAAGACCGCCATTGAGGGCAGCACTGCACCGGGCATCTTGAT
CGATGGATTTCCGCGCCAATTGGATCAAGCTGGTGCGTTTGAAAAAGACA
TTTCTGACTTTGAGTTTGTGATTTTCTTCGATTGCCCGGAGAAGGAAATG
GAAAGACGGTTATTGGAAAGAGGAAAGACGAGCGGTCGCACCGATGACAA
CACCGACGCCATTCACAAGAGGTTTAATACATTTGTGAACACGTCAATGC
CGGTCATTGAGTACTATGAGGCAAAGGGAAAAGTTCATCGCATTGATGCT
ACGCAGAGCATTGAAACAATCACGGGTCTTGTGTCCAAGCTCTTTTGA

protein sequence of Gvermi7980.t2

>Gvermi7980.t2 ID=Gvermi7980.t2|Name=Gvermi7980.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=316bp
MSSGPCVALILRKDDAIKSWREHMGPTNSEKARKEAPHSLRAKFGTDGSK
NATHGSDSPQSASREISFFFPTFQSASQFNGQDAKEYLTKTVTPVLTTAL
TEMCRLTPPNAVEWLGNYLLKSAGVAPMPAKPPARKIYFVLGGPGSGKGT
QCARLVEKLGFDHFSAGDLLRNEVASGSEQGKMIGDMIKEGQIVPGAITI
ALLKTAIEGSTAPGILIDGFPRQLDQAGAFEKDISDFEFVIFFDCPEKEM
ERRLLERGKTSGRTDDNTDAIHKRFNTFVNTSMPVIEYYEAKGKVHRIDA
TQSIETITGLVSKLF*

mRNA from alignment at ScGOVlb_24226:474335..475282+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7980.t2 ID=Gvermi7980.t2|Name=Gvermi7980.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=948bp|location=Sequence derived from alignment at ScGOVlb_24226:474335..475282+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCTCCGGCCCATGCGTTGCGCTCATTCTCCGCAAGGATGACGCCAT
CAAGTCGTGGAGGGAGCATATGGGACCCACAAACTCTGAAAAGGCCCGCA
AGGAGGCGCCCCACTCCCTCCGCGCCAAGTTTGGCACGGATGGTAGTAAG
AACGCCACGCACGGCTCCGACTCCCCTCAAAGCGCTTCACGCGAGATTTC
GTTTTTCTTCCCCACGTTCCAATCCGCCTCCCAGTTCAACGGCCAGGACG
CCAAGGAGTACCTCACCAAGACTGTCACCCCGGTTCTCACGACGGCCCTG
ACGGAAATGTGCCGTCTCACCCCGCCGAATGCCGTCGAGTGGCTTGGCAA
TTACCTGCTCAAGTCCGCTGGCGTCGCGCCCATGCCCGCCAAGCCGCCAG
CGAGGAAGATATACTTTGTGCTCGGCGGCCCGGGCTCTGGAAAGGGCACG
CAGTGCGCCAGGCTTGTAGAGAAGCTTGGATTTGACCACTTTTCTGCGGG
CGACTTGCTGCGCAATGAGGTAGCCAGCGGTTCTGAGCAAGGGAAAATGA
TCGGCGATATGATCAAGGAAGGCCAGATTGTACCGGGCGCAATCACCATC
GCTTTGCTCAAGACCGCCATTGAGGGCAGCACTGCACCGGGCATCTTGAT
CGATGGATTTCCGCGCCAATTGGATCAAGCTGGTGCGTTTGAAAAAGACA
TTTCTGACTTTGAGTTTGTGATTTTCTTCGATTGCCCGGAGAAGGAAATG
GAAAGACGGTTATTGGAAAGAGGAAAGACGAGCGGTCGCACCGATGACAA
CACCGACGCCATTCACAAGAGGTTTAATACATTTGTGAACACGTCAATGC
CGGTCATTGAGTACTATGAGGCAAAGGGAAAAGTTCATCGCATTGATGCT
ACGCAGAGCATTGAAACAATCACGGGTCTTGTGTCCAAGCTCTTTTGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:474335..475282+

>Gvermi7980.t2 ID=Gvermi7980.t2|Name=Gvermi7980.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=948bp|location=Sequence derived from alignment at ScGOVlb_24226:474335..475282+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCTCCGGCCCATGCGTTGCGCTCATTCTCCGCAAGGATGACGCCAT
CAAGTCGTGGAGGGAGCATATGGGACCCACAAACTCTGAAAAGGCCCGCA
AGGAGGCGCCCCACTCCCTCCGCGCCAAGTTTGGCACGGATGGTAGTAAG
AACGCCACGCACGGCTCCGACTCCCCTCAAAGCGCTTCACGCGAGATTTC
GTTTTTCTTCCCCACGTTCCAATCCGCCTCCCAGTTCAACGGCCAGGACG
CCAAGGAGTACCTCACCAAGACTGTCACCCCGGTTCTCACGACGGCCCTG
ACGGAAATGTGCCGTCTCACCCCGCCGAATGCCGTCGAGTGGCTTGGCAA
TTACCTGCTCAAGTCCGCTGGCGTCGCGCCCATGCCCGCCAAGCCGCCAG
CGAGGAAGATATACTTTGTGCTCGGCGGCCCGGGCTCTGGAAAGGGCACG
CAGTGCGCCAGGCTTGTAGAGAAGCTTGGATTTGACCACTTTTCTGCGGG
CGACTTGCTGCGCAATGAGGTAGCCAGCGGTTCTGAGCAAGGGAAAATGA
TCGGCGATATGATCAAGGAAGGCCAGATTGTACCGGGCGCAATCACCATC
GCTTTGCTCAAGACCGCCATTGAGGGCAGCACTGCACCGGGCATCTTGAT
CGATGGATTTCCGCGCCAATTGGATCAAGCTGGTGCGTTTGAAAAAGACA
TTTCTGACTTTGAGTTTGTGATTTTCTTCGATTGCCCGGAGAAGGAAATG
GAAAGACGGTTATTGGAAAGAGGAAAGACGAGCGGTCGCACCGATGACAA
CACCGACGCCATTCACAAGAGGTTTAATACATTTGTGAACACGTCAATGC
CGGTCATTGAGTACTATGAGGCAAAGGGAAAAGTTCATCGCATTGATGCT
ACGCAGAGCATTGAAACAATCACGGGTCTTGTGTCCAAGCTCTTTTGA