Gvermi7980.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7980.t1
Unique Name	Gvermi7980.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	382

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:474137..475282 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707040.1
PFAMs	ADK,Dpy-30
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002
KEGG ko	ko:K00939,ko:K13800
KEGG Reaction	R00127,R00158,R00512,R01547,R01665,R11319,R11891,R11892
KEGG Pathway	ko00230,ko00240,ko00730,ko00983,ko01100,ko01110,ko01130,map00230,map00240,map00730,map00983,map01100,map01110,map01130
KEGG Module	M00049,M00052
Evalue	2.74e-89
EggNOG OGs	COG0563@1\|root,KOG3079@2759\|Eukaryota
EC	2.7.4.14,2.7.4.3
Description	cytidylate kinase activity
COG category	F
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7980	Gvermi7980	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 474137..475282 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7980.t1.start1	Gvermi7980.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 474137..474139 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7980.t1.CDS1	Gvermi7980.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 474137..475282 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7980.t1.exon1	Gvermi7980.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 474137..475282 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7980.t1.stop1	Gvermi7980.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 475280..475282 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7980.t1	Gvermi7980.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 474137..475282 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:474137..475282+
coding sequence from alignment at ScGOVlb_24226:474137..475282+

mRNA sequence

>Gvermi7980.t1 ID=Gvermi7980.t1|Name=Gvermi7980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=382bp
MTVEVEATLALIKPDAYGKADEIIADIKQSGFVIAERKTVNLTKERAGQF
YEEHKDRPFYDDLTDFMSSGPCVALILRKDDAIKSWREHMGPTNSEKARK
EAPHSLRAKFGTDGSKNATHGSDSPQSASREISFFFPTFQSASQFNGQDA
KEYLTKTVTPVLTTALTEMCRLTPPNAVEWLGNYLLKSAGVAPMPAKPPA
RKIYFVLGGPGSGKGTQCARLVEKLGFDHFSAGDLLRNEVASGSEQGKMI
GDMIKEGQIVPGAITIALLKTAIEGSTAPGILIDGFPRQLDQAGAFEKDI
SDFEFVIFFDCPEKEMERRLLERGKTSGRTDDNTDAIHKRFNTFVNTSMP
VIEYYEAKGKVHRIDATQSIETITGLVSKLF*

spliced messenger RNA

>Gvermi7980.t1 ID=Gvermi7980.t1|Name=Gvermi7980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at ScGOVlb_24226:474137..475282+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTCGAGGTCGAGGCTACGCTTGCCCTCATAAAGCCGGACGCCTA
CGGCAAGGCTGATGAAATCATCGCTGACATCAAGCAAAGTGGCTTTGTCA
TTGCTGAGAGAAAGACCGTCAACCTCACCAAGGAGCGCGCCGGTCAGTTC
TACGAGGAGCACAAGGACCGTCCTTTCTACGACGATCTCACGGACTTTAT
GTCCTCCGGCCCATGCGTTGCGCTCATTCTCCGCAAGGATGACGCCATCA
AGTCGTGGAGGGAGCATATGGGACCCACAAACTCTGAAAAGGCCCGCAAG
GAGGCGCCCCACTCCCTCCGCGCCAAGTTTGGCACGGATGGTAGTAAGAA
CGCCACGCACGGCTCCGACTCCCCTCAAAGCGCTTCACGCGAGATTTCGT
TTTTCTTCCCCACGTTCCAATCCGCCTCCCAGTTCAACGGCCAGGACGCC
AAGGAGTACCTCACCAAGACTGTCACCCCGGTTCTCACGACGGCCCTGAC
GGAAATGTGCCGTCTCACCCCGCCGAATGCCGTCGAGTGGCTTGGCAATT
ACCTGCTCAAGTCCGCTGGCGTCGCGCCCATGCCCGCCAAGCCGCCAGCG
AGGAAGATATACTTTGTGCTCGGCGGCCCGGGCTCTGGAAAGGGCACGCA
GTGCGCCAGGCTTGTAGAGAAGCTTGGATTTGACCACTTTTCTGCGGGCG
ACTTGCTGCGCAATGAGGTAGCCAGCGGTTCTGAGCAAGGGAAAATGATC
GGCGATATGATCAAGGAAGGCCAGATTGTACCGGGCGCAATCACCATCGC
TTTGCTCAAGACCGCCATTGAGGGCAGCACTGCACCGGGCATCTTGATCG
ATGGATTTCCGCGCCAATTGGATCAAGCTGGTGCGTTTGAAAAAGACATT
TCTGACTTTGAGTTTGTGATTTTCTTCGATTGCCCGGAGAAGGAAATGGA
AAGACGGTTATTGGAAAGAGGAAAGACGAGCGGTCGCACCGATGACAACA
CCGACGCCATTCACAAGAGGTTTAATACATTTGTGAACACGTCAATGCCG
GTCATTGAGTACTATGAGGCAAAGGGAAAAGTTCATCGCATTGATGCTAC
GCAGAGCATTGAAACAATCACGGGTCTTGTGTCCAAGCTCTTTTGA

protein sequence of Gvermi7980.t1

>Gvermi7980.t1 ID=Gvermi7980.t1|Name=Gvermi7980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=382bp
MTVEVEATLALIKPDAYGKADEIIADIKQSGFVIAERKTVNLTKERAGQF
YEEHKDRPFYDDLTDFMSSGPCVALILRKDDAIKSWREHMGPTNSEKARK
EAPHSLRAKFGTDGSKNATHGSDSPQSASREISFFFPTFQSASQFNGQDA
KEYLTKTVTPVLTTALTEMCRLTPPNAVEWLGNYLLKSAGVAPMPAKPPA
RKIYFVLGGPGSGKGTQCARLVEKLGFDHFSAGDLLRNEVASGSEQGKMI
GDMIKEGQIVPGAITIALLKTAIEGSTAPGILIDGFPRQLDQAGAFEKDI
SDFEFVIFFDCPEKEMERRLLERGKTSGRTDDNTDAIHKRFNTFVNTSMP
VIEYYEAKGKVHRIDATQSIETITGLVSKLF*

mRNA from alignment at ScGOVlb_24226:474137..475282+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7980.t1 ID=Gvermi7980.t1|Name=Gvermi7980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at ScGOVlb_24226:474137..475282+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGTCGAGGTCGAGGCTACGCTTGCCCTCATAAAGCCGGACGCCTA
CGGCAAGGCTGATGAAATCATCGCTGACATCAAGCAAAGTGGCTTTGTCA
TTGCTGAGAGAAAGACCGTCAACCTCACCAAGGAGCGCGCCGGTCAGTTC
TACGAGGAGCACAAGGACCGTCCTTTCTACGACGATCTCACGGACTTTAT
GTCCTCCGGCCCATGCGTTGCGCTCATTCTCCGCAAGGATGACGCCATCA
AGTCGTGGAGGGAGCATATGGGACCCACAAACTCTGAAAAGGCCCGCAAG
GAGGCGCCCCACTCCCTCCGCGCCAAGTTTGGCACGGATGGTAGTAAGAA
CGCCACGCACGGCTCCGACTCCCCTCAAAGCGCTTCACGCGAGATTTCGT
TTTTCTTCCCCACGTTCCAATCCGCCTCCCAGTTCAACGGCCAGGACGCC
AAGGAGTACCTCACCAAGACTGTCACCCCGGTTCTCACGACGGCCCTGAC
GGAAATGTGCCGTCTCACCCCGCCGAATGCCGTCGAGTGGCTTGGCAATT
ACCTGCTCAAGTCCGCTGGCGTCGCGCCCATGCCCGCCAAGCCGCCAGCG
AGGAAGATATACTTTGTGCTCGGCGGCCCGGGCTCTGGAAAGGGCACGCA
GTGCGCCAGGCTTGTAGAGAAGCTTGGATTTGACCACTTTTCTGCGGGCG
ACTTGCTGCGCAATGAGGTAGCCAGCGGTTCTGAGCAAGGGAAAATGATC
GGCGATATGATCAAGGAAGGCCAGATTGTACCGGGCGCAATCACCATCGC
TTTGCTCAAGACCGCCATTGAGGGCAGCACTGCACCGGGCATCTTGATCG
ATGGATTTCCGCGCCAATTGGATCAAGCTGGTGCGTTTGAAAAAGACATT
TCTGACTTTGAGTTTGTGATTTTCTTCGATTGCCCGGAGAAGGAAATGGA
AAGACGGTTATTGGAAAGAGGAAAGACGAGCGGTCGCACCGATGACAACA
CCGACGCCATTCACAAGAGGTTTAATACATTTGTGAACACGTCAATGCCG
GTCATTGAGTACTATGAGGCAAAGGGAAAAGTTCATCGCATTGATGCTAC
GCAGAGCATTGAAACAATCACGGGTCTTGTGTCCAAGCTCTTTTGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:474137..475282+

>Gvermi7980.t1 ID=Gvermi7980.t1|Name=Gvermi7980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1146bp|location=Sequence derived from alignment at ScGOVlb_24226:474137..475282+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGTCGAGGTCGAGGCTACGCTTGCCCTCATAAAGCCGGACGCCTA
CGGCAAGGCTGATGAAATCATCGCTGACATCAAGCAAAGTGGCTTTGTCA
TTGCTGAGAGAAAGACCGTCAACCTCACCAAGGAGCGCGCCGGTCAGTTC
TACGAGGAGCACAAGGACCGTCCTTTCTACGACGATCTCACGGACTTTAT
GTCCTCCGGCCCATGCGTTGCGCTCATTCTCCGCAAGGATGACGCCATCA
AGTCGTGGAGGGAGCATATGGGACCCACAAACTCTGAAAAGGCCCGCAAG
GAGGCGCCCCACTCCCTCCGCGCCAAGTTTGGCACGGATGGTAGTAAGAA
CGCCACGCACGGCTCCGACTCCCCTCAAAGCGCTTCACGCGAGATTTCGT
TTTTCTTCCCCACGTTCCAATCCGCCTCCCAGTTCAACGGCCAGGACGCC
AAGGAGTACCTCACCAAGACTGTCACCCCGGTTCTCACGACGGCCCTGAC
GGAAATGTGCCGTCTCACCCCGCCGAATGCCGTCGAGTGGCTTGGCAATT
ACCTGCTCAAGTCCGCTGGCGTCGCGCCCATGCCCGCCAAGCCGCCAGCG
AGGAAGATATACTTTGTGCTCGGCGGCCCGGGCTCTGGAAAGGGCACGCA
GTGCGCCAGGCTTGTAGAGAAGCTTGGATTTGACCACTTTTCTGCGGGCG
ACTTGCTGCGCAATGAGGTAGCCAGCGGTTCTGAGCAAGGGAAAATGATC
GGCGATATGATCAAGGAAGGCCAGATTGTACCGGGCGCAATCACCATCGC
TTTGCTCAAGACCGCCATTGAGGGCAGCACTGCACCGGGCATCTTGATCG
ATGGATTTCCGCGCCAATTGGATCAAGCTGGTGCGTTTGAAAAAGACATT
TCTGACTTTGAGTTTGTGATTTTCTTCGATTGCCCGGAGAAGGAAATGGA
AAGACGGTTATTGGAAAGAGGAAAGACGAGCGGTCGCACCGATGACAACA
CCGACGCCATTCACAAGAGGTTTAATACATTTGTGAACACGTCAATGCCG
GTCATTGAGTACTATGAGGCAAAGGGAAAAGTTCATCGCATTGATGCTAC
GCAGAGCATTGAAACAATCACGGGTCTTGTGTCCAAGCTCTTTTGA