Gvermi7940.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7940.t1
Unique NameGvermi7940.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:233100..233540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S217_91V6.1
PFAMsRotamase,Rotamase_3
Max annot lvl35493|Streptophyta
KEGG koko:K09579
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003681,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005819,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue6.35e-45
EggNOG OGsCOG0760@1|root,KOG3258@2759|Eukaryota,37TSN@33090|Viridiplantae,3GIEX@35493|Streptophyta
EC5.2.1.8
DescriptionPeptidyl-prolyl cis-trans isomerase
COG categoryO
BRITEko00000,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7940Gvermi7940Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 233100..233540 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7940.t1.start1Gvermi7940.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 233100..233102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7940.t1.CDS1Gvermi7940.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 233100..233540 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7940.t1.exon1Gvermi7940.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 233100..233540 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7940.t1.stop1Gvermi7940.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 233538..233540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7940.t1Gvermi7940.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 233100..233540 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7940.t1 ID=Gvermi7940.t1|Name=Gvermi7940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=147bp
MGKKGGKGASSSASGGKGKGQAGPSNPNKGGKGGKGGKGGNDDMKNCNYV
KARHILCEKYGKIDEAYTELKEKYPGKIPPAKFGEIAKKYSECSSGNSGG
NLGWFPRGKMVGAFEEKAFNTPPGEVTAPFKSSAGYHIVLVEGRKM*
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spliced messenger RNA

>Gvermi7940.t1 ID=Gvermi7940.t1|Name=Gvermi7940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=441bp|location=Sequence derived from alignment at ScGOVlb_24226:233100..233540+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAAGAAGGGAGGCAAAGGAGCCAGCTCCAGTGCAAGCGGCGGAAA
AGGAAAAGGGCAGGCCGGTCCAAGCAATCCAAATAAGGGGGGCAAGGGCG
GCAAGGGCGGAAAGGGCGGTAATGACGACATGAAAAACTGCAACTACGTC
AAAGCCCGCCACATTCTATGCGAGAAGTACGGAAAGATTGATGAGGCGTA
CACGGAGCTGAAAGAAAAGTATCCTGGCAAGATCCCCCCTGCCAAGTTCG
GAGAAATTGCCAAAAAGTATAGTGAGTGTTCTTCAGGCAACTCTGGTGGT
AATTTGGGTTGGTTCCCGCGTGGAAAGATGGTGGGTGCTTTCGAGGAAAA
GGCGTTCAACACGCCGCCGGGAGAAGTCACGGCCCCGTTTAAGAGCAGTG
CTGGTTATCATATTGTGCTGGTTGAGGGCCGTAAGATGTAG
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protein sequence of Gvermi7940.t1

>Gvermi7940.t1 ID=Gvermi7940.t1|Name=Gvermi7940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=147bp
MGKKGGKGASSSASGGKGKGQAGPSNPNKGGKGGKGGKGGNDDMKNCNYV
KARHILCEKYGKIDEAYTELKEKYPGKIPPAKFGEIAKKYSECSSGNSGG
NLGWFPRGKMVGAFEEKAFNTPPGEVTAPFKSSAGYHIVLVEGRKM*
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mRNA from alignment at ScGOVlb_24226:233100..233540+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7940.t1 ID=Gvermi7940.t1|Name=Gvermi7940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=441bp|location=Sequence derived from alignment at ScGOVlb_24226:233100..233540+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAAAGAAGGGAGGCAAAGGAGCCAGCTCCAGTGCAAGCGGCGGAAA
AGGAAAAGGGCAGGCCGGTCCAAGCAATCCAAATAAGGGGGGCAAGGGCG
GCAAGGGCGGAAAGGGCGGTAATGACGACATGAAAAACTGCAACTACGTC
AAAGCCCGCCACATTCTATGCGAGAAGTACGGAAAGATTGATGAGGCGTA
CACGGAGCTGAAAGAAAAGTATCCTGGCAAGATCCCCCCTGCCAAGTTCG
GAGAAATTGCCAAAAAGTATAGTGAGTGTTCTTCAGGCAACTCTGGTGGT
AATTTGGGTTGGTTCCCGCGTGGAAAGATGGTGGGTGCTTTCGAGGAAAA
GGCGTTCAACACGCCGCCGGGAGAAGTCACGGCCCCGTTTAAGAGCAGTG
CTGGTTATCATATTGTGCTGGTTGAGGGCCGTAAGATGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:233100..233540+

>Gvermi7940.t1 ID=Gvermi7940.t1|Name=Gvermi7940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=441bp|location=Sequence derived from alignment at ScGOVlb_24226:233100..233540+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAAAGAAGGGAGGCAAAGGAGCCAGCTCCAGTGCAAGCGGCGGAAA
AGGAAAAGGGCAGGCCGGTCCAAGCAATCCAAATAAGGGGGGCAAGGGCG
GCAAGGGCGGAAAGGGCGGTAATGACGACATGAAAAACTGCAACTACGTC
AAAGCCCGCCACATTCTATGCGAGAAGTACGGAAAGATTGATGAGGCGTA
CACGGAGCTGAAAGAAAAGTATCCTGGCAAGATCCCCCCTGCCAAGTTCG
GAGAAATTGCCAAAAAGTATAGTGAGTGTTCTTCAGGCAACTCTGGTGGT
AATTTGGGTTGGTTCCCGCGTGGAAAGATGGTGGGTGCTTTCGAGGAAAA
GGCGTTCAACACGCCGCCGGGAGAAGTCACGGCCCCGTTTAAGAGCAGTG
CTGGTTATCATATTGTGCTGGTTGAGGGCCGTAAGATGTAG
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