Gvermi8135.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8135.t1
Unique NameGvermi8135.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1202929..1203969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709322.1
PFAMsROK
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00847
KEGG ReactionR00760,R00867,R03920
KEGG Pathwayko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100
Evalue1.25e-86
EggNOG OGsCOG1940@1|root,2QRD3@2759|Eukaryota
EC2.7.1.4
DescriptionROK family
COG categoryGK
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8135Gvermi8135Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1202929..1203969 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8135.t1.stop1Gvermi8135.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1202929..1202931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8135.t1.CDS1Gvermi8135.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1202929..1203969 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8135.t1.exon1Gvermi8135.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1202929..1203969 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8135.t1.start1Gvermi8135.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1203967..1203969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8135.t1Gvermi8135.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1202929..1203969 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8135.t1 ID=Gvermi8135.t1|Name=Gvermi8135.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=347bp
MHSLSTPAWRGAALAAAFVSGAALTHLYHHRKARRLSSAPAHRVQLPPNS
LLAAVELGGTTCRAALAFSDEPTKLVDSTEVPTTDPHTTLLHIVRFLRTH
APFASLGIASFGPLDLDRASPTYGYVTSTNKPGWRYTDLLSFFNEFDVPI
GFDTDVNAPAVAELRYGNHTGDSCAYVTVGTGIGVGMVVHGNPIHGLVHP
EAGHIMPLKRDHDHYQGWLTDQPGSVESLASAKACADRAGVEPSNLASVS
DEHPAWDDVAYYLAQLCYSICMIASPHVIVLSGGVMKRSSLFDKIRQHFV
QINNDYLSIDRLTKDIDKYIVPSKFGNDMGIIGALELARRAALGIK*
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spliced messenger RNA

>Gvermi8135.t1 ID=Gvermi8135.t1|Name=Gvermi8135.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at ScGOVlb_24226:1202929..1203969- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTCCCTCTCCACTCCGGCTTGGCGCGGCGCGGCGCTCGCCGCCGC
CTTTGTGTCAGGCGCCGCGCTCACCCACCTCTACCACCACCGCAAAGCGC
GCCGCCTCTCCTCCGCTCCAGCTCATCGCGTGCAGCTACCGCCCAATTCC
CTCCTCGCAGCCGTTGAGCTCGGCGGCACCACGTGTCGCGCCGCATTGGC
CTTCTCCGACGAGCCCACCAAGTTGGTCGACTCCACCGAGGTGCCTACCA
CCGATCCTCACACCACCCTTTTGCACATTGTGCGCTTCCTTCGCACACAT
GCTCCATTCGCTTCGCTCGGCATCGCCTCGTTTGGTCCGTTGGACCTCGA
TCGCGCATCCCCTACGTATGGCTACGTCACCTCCACAAATAAGCCGGGCT
GGAGATACACAGACCTTTTGTCCTTCTTCAACGAGTTTGATGTCCCTATC
GGGTTCGACACAGACGTGAACGCGCCTGCTGTCGCAGAACTTCGTTATGG
AAACCACACCGGCGATAGCTGCGCCTACGTCACTGTAGGCACCGGTATTG
GCGTCGGAATGGTCGTGCATGGCAATCCCATTCACGGTCTCGTGCACCCG
GAAGCGGGCCATATCATGCCACTCAAGAGGGATCATGACCACTATCAGGG
GTGGCTCACTGATCAGCCCGGTTCCGTCGAATCCTTGGCCAGCGCCAAAG
CTTGCGCCGACCGTGCCGGAGTCGAGCCCAGCAATCTAGCGTCCGTGTCT
GATGAACATCCAGCGTGGGATGATGTCGCGTACTACCTTGCGCAGCTGTG
CTACTCTATATGCATGATTGCATCGCCCCATGTTATCGTTTTATCTGGCG
GAGTAATGAAACGAAGCTCACTTTTCGACAAGATCCGACAACATTTCGTG
CAAATCAACAATGATTATCTTTCCATCGATAGACTGACCAAAGACATCGA
CAAGTATATTGTGCCCAGTAAGTTCGGCAACGACATGGGCATCATTGGCG
CCTTGGAGCTTGCGCGGCGGGCGGCGCTTGGAATAAAATGA
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protein sequence of Gvermi8135.t1

>Gvermi8135.t1 ID=Gvermi8135.t1|Name=Gvermi8135.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=347bp
MHSLSTPAWRGAALAAAFVSGAALTHLYHHRKARRLSSAPAHRVQLPPNS
LLAAVELGGTTCRAALAFSDEPTKLVDSTEVPTTDPHTTLLHIVRFLRTH
APFASLGIASFGPLDLDRASPTYGYVTSTNKPGWRYTDLLSFFNEFDVPI
GFDTDVNAPAVAELRYGNHTGDSCAYVTVGTGIGVGMVVHGNPIHGLVHP
EAGHIMPLKRDHDHYQGWLTDQPGSVESLASAKACADRAGVEPSNLASVS
DEHPAWDDVAYYLAQLCYSICMIASPHVIVLSGGVMKRSSLFDKIRQHFV
QINNDYLSIDRLTKDIDKYIVPSKFGNDMGIIGALELARRAALGIK*
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mRNA from alignment at ScGOVlb_24226:1202929..1203969-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8135.t1 ID=Gvermi8135.t1|Name=Gvermi8135.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at ScGOVlb_24226:1202929..1203969- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACTCCCTCTCCACTCCGGCTTGGCGCGGCGCGGCGCTCGCCGCCGC
CTTTGTGTCAGGCGCCGCGCTCACCCACCTCTACCACCACCGCAAAGCGC
GCCGCCTCTCCTCCGCTCCAGCTCATCGCGTGCAGCTACCGCCCAATTCC
CTCCTCGCAGCCGTTGAGCTCGGCGGCACCACGTGTCGCGCCGCATTGGC
CTTCTCCGACGAGCCCACCAAGTTGGTCGACTCCACCGAGGTGCCTACCA
CCGATCCTCACACCACCCTTTTGCACATTGTGCGCTTCCTTCGCACACAT
GCTCCATTCGCTTCGCTCGGCATCGCCTCGTTTGGTCCGTTGGACCTCGA
TCGCGCATCCCCTACGTATGGCTACGTCACCTCCACAAATAAGCCGGGCT
GGAGATACACAGACCTTTTGTCCTTCTTCAACGAGTTTGATGTCCCTATC
GGGTTCGACACAGACGTGAACGCGCCTGCTGTCGCAGAACTTCGTTATGG
AAACCACACCGGCGATAGCTGCGCCTACGTCACTGTAGGCACCGGTATTG
GCGTCGGAATGGTCGTGCATGGCAATCCCATTCACGGTCTCGTGCACCCG
GAAGCGGGCCATATCATGCCACTCAAGAGGGATCATGACCACTATCAGGG
GTGGCTCACTGATCAGCCCGGTTCCGTCGAATCCTTGGCCAGCGCCAAAG
CTTGCGCCGACCGTGCCGGAGTCGAGCCCAGCAATCTAGCGTCCGTGTCT
GATGAACATCCAGCGTGGGATGATGTCGCGTACTACCTTGCGCAGCTGTG
CTACTCTATATGCATGATTGCATCGCCCCATGTTATCGTTTTATCTGGCG
GAGTAATGAAACGAAGCTCACTTTTCGACAAGATCCGACAACATTTCGTG
CAAATCAACAATGATTATCTTTCCATCGATAGACTGACCAAAGACATCGA
CAAGTATATTGTGCCCAGTAAGTTCGGCAACGACATGGGCATCATTGGCG
CCTTGGAGCTTGCGCGGCGGGCGGCGCTTGGAATAAAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1202929..1203969-

>Gvermi8135.t1 ID=Gvermi8135.t1|Name=Gvermi8135.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1041bp|location=Sequence derived from alignment at ScGOVlb_24226:1202929..1203969- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACTCCCTCTCCACTCCGGCTTGGCGCGGCGCGGCGCTCGCCGCCGC
CTTTGTGTCAGGCGCCGCGCTCACCCACCTCTACCACCACCGCAAAGCGC
GCCGCCTCTCCTCCGCTCCAGCTCATCGCGTGCAGCTACCGCCCAATTCC
CTCCTCGCAGCCGTTGAGCTCGGCGGCACCACGTGTCGCGCCGCATTGGC
CTTCTCCGACGAGCCCACCAAGTTGGTCGACTCCACCGAGGTGCCTACCA
CCGATCCTCACACCACCCTTTTGCACATTGTGCGCTTCCTTCGCACACAT
GCTCCATTCGCTTCGCTCGGCATCGCCTCGTTTGGTCCGTTGGACCTCGA
TCGCGCATCCCCTACGTATGGCTACGTCACCTCCACAAATAAGCCGGGCT
GGAGATACACAGACCTTTTGTCCTTCTTCAACGAGTTTGATGTCCCTATC
GGGTTCGACACAGACGTGAACGCGCCTGCTGTCGCAGAACTTCGTTATGG
AAACCACACCGGCGATAGCTGCGCCTACGTCACTGTAGGCACCGGTATTG
GCGTCGGAATGGTCGTGCATGGCAATCCCATTCACGGTCTCGTGCACCCG
GAAGCGGGCCATATCATGCCACTCAAGAGGGATCATGACCACTATCAGGG
GTGGCTCACTGATCAGCCCGGTTCCGTCGAATCCTTGGCCAGCGCCAAAG
CTTGCGCCGACCGTGCCGGAGTCGAGCCCAGCAATCTAGCGTCCGTGTCT
GATGAACATCCAGCGTGGGATGATGTCGCGTACTACCTTGCGCAGCTGTG
CTACTCTATATGCATGATTGCATCGCCCCATGTTATCGTTTTATCTGGCG
GAGTAATGAAACGAAGCTCACTTTTCGACAAGATCCGACAACATTTCGTG
CAAATCAACAATGATTATCTTTCCATCGATAGACTGACCAAAGACATCGA
CAAGTATATTGTGCCCAGTAAGTTCGGCAACGACATGGGCATCATTGGCG
CCTTGGAGCTTGCGCGGCGGGCGGCGCTTGGAATAAAATGA
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