Gvermi8087.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi8087.t1
Unique Name	Gvermi8087.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	109

Homology

[Close]

BLAST of Gvermi8087.t1 vs. uniprot
Match: A0A2V3J546_9FLOR (Cytochrome c n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J546_9FLOR)

HSP 1 Score: 210 bits (534), Expect = 9.000e-69
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 0

Query:    1 MGVPDGNVDKGAKLFKTKCSQCHTYNQGGGTKQGPNLWGLFGRTAGTVEGFAYTAANKNSGIIWSDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRADLIAFLKANTQ 108
            M VPDGNV KGAK+FKTKCSQCHTY +GGGTKQGPNLWGLFGRTAGTV+GFAYTAANKNSGIIW D+TLFDYLLNPKKYIKGTKMVFAGLKKEKDR DLI+FLKANTQ
Sbjct:    1 MAVPDGNVAKGAKIFKTKCSQCHTYEKGGGTKQGPNLWGLFGRTAGTVDGFAYTAANKNSGIIWGDETLFDYLLNPKKYIKGTKMVFAGLKKEKDRHDLISFLKANTQ 108

[Close]

BLAST of Gvermi8087.t1 vs. uniprot
Match: R7QDE3_CHOCR (Similar to cytochrome c (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDE3_CHOCR)

HSP 1 Score: 200 bits (509), Expect = 7.100e-65
Identity = 91/107 (85.05%), Postives = 102/107 (95.33%), Query Frame = 0

Query:    1 MGVPDGNVDKGAKLFKTKCSQCHTYNQGGGTKQGPNLWGLFGRTAGTVEGFAYTAANKNSGIIWSDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRADLIAFLKANT 107
            MG+P G ++KGAK+FKTKCSQCHTY+QGGGTKQGPNLWGLFGR +G+VEGFAYTAANKNSGIIWSDQTLF+YLLNPK+YIKGTKMVFAGLKKE+DRADLI FLK +T
Sbjct:    7 MGIPAGRIEKGAKIFKTKCSQCHTYDQGGGTKQGPNLWGLFGRQSGSVEGFAYTAANKNSGIIWSDQTLFEYLLNPKRYIKGTKMVFAGLKKEQDRADLIEFLKTHT 113

[Close]

BLAST of Gvermi8087.t1 vs. uniprot
Match: M1VHH6_CYAM1 (Similar to cytochrome c n=2 Tax=Cyanidiaceae TaxID=265316 RepID=M1VHH6_CYAM1)

HSP 1 Score: 171 bits (433), Expect = 2.430e-53
Identity = 78/105 (74.29%), Postives = 91/105 (86.67%), Query Frame = 0

Query:    3 VPDGNVDKGAKLFKTKCSQCHTYNQGGGTKQGPNLWGLFGRTAGTVEGFAYTAANKNSGIIWSDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRADLIAFLKANT 107
            +P+G+  +G K+FKTKCSQCHTY +GG TKQGPNL GLFGR AG+V GFAYTAANKNSG++W D+TLF+YL NPKKYI GTKMVFAGLKK ++RADLIAFLK  T
Sbjct:    4 IPEGDASRGEKIFKTKCSQCHTYEKGGPTKQGPNLHGLFGRPAGSVPGFAYTAANKNSGVVWKDETLFEYLENPKKYIPGTKMVFAGLKKPQERADLIAFLKKAT 108

[Close]

BLAST of Gvermi8087.t1 vs. uniprot
Match: A4RW27_OSTLU (Cytochrome c domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RW27_OSTLU)

HSP 1 Score: 166 bits (421), Expect = 1.750e-51
Identity = 76/106 (71.70%), Postives = 89/106 (83.96%), Query Frame = 0

Query:    3 VPDGNVDKGAKLFKTKCSQCHTYNQGGGTKQGPNLWGLFGRTAGTVEGFAYTAANKNSGIIWSDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRADLIAFLKANTQ 108
             P GN  KGAK+FKTKC+QCH   +GGG KQGPNL GLFGR +GT EGF+Y+AANKN G+ WS+ TL+DYLLNPKKYI GTKMVFAGLKK +DRADLIA+LK +T+
Sbjct:    7 APAGNAAKGAKIFKTKCAQCHVAEKGGGHKQGPNLGGLFGRVSGTTEGFSYSAANKNKGVTWSENTLYDYLLNPKKYIPGTKMVFAGLKKPEDRADLIAYLKESTK 112

[Close]

BLAST of Gvermi8087.t1 vs. uniprot
Match: A0A7S1XIX6_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XIX6_9RHOD)

HSP 1 Score: 166 bits (421), Expect = 5.430e-51
Identity = 80/102 (78.43%), Postives = 87/102 (85.29%), Query Frame = 0

Query:    6 GNVDKGAKLFKTKCSQCHTYNQGGGTKQGPNLWGLFGRTAGTVEGFAYTAANKNSGIIWSDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRADLIAFLKANT 107
            GN +KGAKLFKTKCSQCHTY  G   KQGPNL GLFGR +GTVEGF+YTAANKNSGI W+  TLF+YL NPKKYI GTKMVFAGLKKE++RADLIAFLK  T
Sbjct:   46 GNEEKGAKLFKTKCSQCHTYEAGAPAKQGPNLSGLFGRQSGTVEGFSYTAANKNSGITWNQDTLFEYLENPKKYIPGTKMVFAGLKKEQERADLIAFLKQAT 147

[Close]

BLAST of Gvermi8087.t1 vs. uniprot
Match: A0A8J5XD05_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XD05_DIALT)

HSP 1 Score: 164 bits (416), Expect = 8.920e-51
Identity = 72/107 (67.29%), Postives = 90/107 (84.11%), Query Frame = 0

Query:    1 MGVPDGNVDKGAKLFKTKCSQCHTYNQGGGTKQGPNLWGLFGRTAGTVEGFAYTAANKNSGIIWSDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRADLIAFLKANT 107
            MGVPDG+   GAK+FK KC+ CHTY++GG +K GPNL+GLFGRT+GTVEG++YT AN++ G++W+D TLFDYL NPKKYI GTKM FAG KK ++RAD+IAFLK  T
Sbjct:    1 MGVPDGDAKSGAKIFKVKCATCHTYDKGGASKTGPNLYGLFGRTSGTVEGYSYTQANRDKGVVWNDDTLFDYLENPKKYIPGTKMAFAGFKKPQERADVIAFLKEAT 107

[Close]

BLAST of Gvermi8087.t1 vs. uniprot
Match: C1EDX4_MICCC (Cytochrome c domain-containing protein n=8 Tax=Mamiellales TaxID=13792 RepID=C1EDX4_MICCC)

HSP 1 Score: 164 bits (416), Expect = 1.010e-50
Identity = 75/103 (72.82%), Postives = 87/103 (84.47%), Query Frame = 0

Query:    3 VPDGNVDKGAKLFKTKCSQCHTYNQGGGTKQGPNLWGLFGRTAGTVEGFAYTAANKNSGIIWSDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRADLIAFLKA 105
             P G+ +KGAK+FKTKC+QCH    GGG KQGPNL GLFGR +GT EGFAY+AANKN G+ W ++TL+DYLLNPKKYI GTKMVFAGLKK +DRADLIA+LKA
Sbjct:    7 APAGDAEKGAKIFKTKCAQCHVAESGGGHKQGPNLGGLFGRVSGTTEGFAYSAANKNKGVKWGEETLYDYLLNPKKYIPGTKMVFAGLKKPQDRADLIAYLKA 109

[Close]

BLAST of Gvermi8087.t1 vs. uniprot
Match: A0A7S4U6T7_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4U6T7_9EUKA)

HSP 1 Score: 162 bits (411), Expect = 5.320e-50
Identity = 70/105 (66.67%), Postives = 91/105 (86.67%), Query Frame = 0

Query:    1 MGVPDGNVDKGAKLFKTKCSQCHTYNQGGGTKQGPNLWGLFGRTAGTVEGFAYTAANKNSGIIWSDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRADLIAFLKA 105
            MG+P+GNV+ GAKLFK +C+QCHT N+GG  K GPNL+G+FGR +G+V G++YTAANKN+GI+WSDQTLFDYL NPKKYI  TKM FAG KK +DR+D+IA++++
Sbjct:    1 MGIPEGNVENGAKLFKARCTQCHTVNKGGANKTGPNLYGVFGRQSGSVVGYSYTAANKNAGIVWSDQTLFDYLENPKKYIPKTKMAFAGFKKPQDRSDVIAYMRS 105

[Close]

BLAST of Gvermi8087.t1 vs. uniprot
Match: A0A7S3EMV1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EMV1_9RHOD)

HSP 1 Score: 164 bits (414), Expect = 1.710e-49
Identity = 78/102 (76.47%), Postives = 88/102 (86.27%), Query Frame = 0

Query:    6 GNVDKGAKLFKTKCSQCHTYNQGGGTKQGPNLWGLFGRTAGTVEGFAYTAANKNSGIIWSDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRADLIAFLKANT 107
            G++ KG KLFKTKCSQCHTY++GG TKQGPNL GLFGR +G+VEGF+YTAANKNSGI+W D TLF+YL NPKK I GTKMVFAGLKKE +R DLIAFLK  T
Sbjct:   77 GDLAKGEKLFKTKCSQCHTYDKGGMTKQGPNLHGLFGRQSGSVEGFSYTAANKNSGILWGDDTLFEYLKNPKKMIPGTKMVFAGLKKESERRDLIAFLKKVT 178

[Close]

BLAST of Gvermi8087.t1 vs. uniprot
Match: A7ANI1_BABBO (Cytochrome c, putative n=1 Tax=Babesia bovis TaxID=5865 RepID=A7ANI1_BABBO)

HSP 1 Score: 161 bits (407), Expect = 2.610e-49
Identity = 74/106 (69.81%), Postives = 93/106 (87.74%), Query Frame = 0

Query:    3 VPDGNVDKGAKLFKTKCSQCHTYNQGGGTKQGPNLWGLFGRTAGTVEGFAYTAANKNSGIIWSDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRADLIAFLKANTQ 108
            VPDG+  KGAKLFK+KC+QCHT N+GG TKQGPNL+GLFGR +G+ + +AYT ANK+SGI+WSD+ LF YL+NPK+YI GTKM+FAGLKKE+DRAD+IA+LK  T+
Sbjct:   10 VPDGDAQKGAKLFKSKCAQCHTTNKGGATKQGPNLYGLFGRASGSAD-YAYTDANKSSGIVWSDKHLFVYLVNPKEYIPGTKMIFAGLKKEQDRADIIAYLKEATK 114

The following BLAST results are available for this feature:

BLAST of Gvermi8087.t1 vs. uniprot

BLAST of Gvermi8087.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3J546_9FLOR	9.000e-69	90.74	Cytochrome c n=1 Tax=Gracilariopsis chorda TaxID=4...	[more]
R7QDE3_CHOCR	7.100e-65	85.05	Similar to cytochrome c (Fragment) n=1 Tax=Chondru...	[more]
M1VHH6_CYAM1	2.430e-53	74.29	Similar to cytochrome c n=2 Tax=Cyanidiaceae TaxID...	[more]
A4RW27_OSTLU	1.750e-51	71.70	Cytochrome c domain-containing protein n=1 Tax=Ost...	[more]
A0A7S1XIX6_9RHOD	5.430e-51	78.43	Hypothetical protein n=1 Tax=Erythrolobus australi...	[more]
A0A8J5XD05_DIALT	8.920e-51	67.29	Uncharacterized protein n=1 Tax=Diacronema lutheri...	[more]
C1EDX4_MICCC	1.010e-50	72.82	Cytochrome c domain-containing protein n=8 Tax=Mam...	[more]
A0A7S4U6T7_9EUKA	5.320e-50	66.67	Hypothetical protein n=1 Tax=Paramoeba aestuarina ...	[more]
A0A7S3EMV1_9RHOD	1.710e-49	76.47	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]
A7ANI1_BABBO	2.610e-49	69.81	Cytochrome c, putative n=1 Tax=Babesia bovis TaxID...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002327	Cytochrome c, class IA/ IB	PRINTS	PR00604	CYTCHRMECIAB	coord: 31..46 score: 65.71 coord: 18..25 score: 66.94 coord: 61..77 score: 56.73 coord: 47..57 score: 54.97 coord: 80..90 score: 75.28 coord: 97..105 score: 65.32
IPR002327	Cytochrome c, class IA/ IB	PANTHER	PTHR11961	CYTOCHROME C	coord: 3..107
IPR036909	Cytochrome c-like domain superfamily	GENE3D	1.10.760.10		coord: 2..106 e-value: 1.9E-42 score: 146.6
IPR036909	Cytochrome c-like domain superfamily	SUPERFAMILY	46626	Cytochrome c	coord: 5..104
IPR009056	Cytochrome c-like domain	PFAM	PF00034	Cytochrom_C	coord: 9..104 e-value: 7.7E-12 score: 46.1
IPR009056	Cytochrome c-like domain	PROSITE	PS51007	CYTC	coord: 6..107 score: 14.898153
None	No IPR available	PANTHER	PTHR11961:SF32	CYTOCHROME C	coord: 3..107

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:959834..960354 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8087.t1	Gvermi8087.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_24226 959834..960354 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi8087.t1 ID=Gvermi8087.t1|Name=Gvermi8087.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=109bp
MGVPDGNVDKGAKLFKTKCSQCHTYNQGGGTKQGPNLWGLFGRTAGTVEG
FAYTAANKNSGIIWSDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRADLI
AFLKANTQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002327	Cyt_c_1A/1B
IPR036909	Cyt_c-like_dom_sf
IPR009056	Cyt_c-like_dom