Gvermi7973.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7973.t1
Unique NameGvermi7973.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length323
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:411353..412321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7973Gvermi7973Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 411353..412321 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7973.t1.stop1Gvermi7973.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 411353..411355 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7973.t1.CDS1Gvermi7973.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 411353..412321 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7973.t1.exon1Gvermi7973.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 411353..412321 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7973.t1.start1Gvermi7973.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 412319..412321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7973.t1Gvermi7973.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 411353..412321 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7973.t1 ID=Gvermi7973.t1|Name=Gvermi7973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=323bp
MSPVLFCIALALFFVAAAGAPAPLSPPHASVEQALARRRRAHRVAFVVHV
VHSAARQHAEDAGVPEQADAGRGAGSPAASHTRPDESAHSETPPAAPQQA
EPPAKDTPQSDSKHGQAPRADPLQSEEKHNEQQADVSQAEPPQTQPQQDQ
SQQSQPQQSPSQPSQSQPSQSQQEESQQSHEQQDEAQQGKLTPESIAPGA
GDSQPEQPPQAQTAQENSSSPPSQPESLSKHSAQPPFKPSVSTVGIVGAV
ATVVVAAILVWSKSGNSPLSAAQLVSHAYQRVRTEGRRANASAQSSSDAD
GWNAGWDDDDEDWNTNTQSTKV*
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spliced messenger RNA

>Gvermi7973.t1 ID=Gvermi7973.t1|Name=Gvermi7973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=969bp|location=Sequence derived from alignment at ScGOVlb_24226:411353..412321- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCCGTCCTGTTTTGCATCGCGCTCGCGCTCTTCTTCGTCGCCGC
GGCGGGCGCGCCCGCCCCGTTATCGCCGCCCCACGCCTCGGTGGAACAGG
CGCTTGCGCGGAGGCGCCGCGCCCACCGCGTCGCCTTTGTCGTGCACGTC
GTGCACAGCGCCGCCCGTCAGCACGCGGAGGACGCCGGCGTGCCGGAGCA
GGCGGATGCTGGCCGCGGCGCCGGGTCGCCGGCCGCCTCCCACACCCGCC
CCGACGAAAGCGCCCACAGTGAGACGCCGCCGGCGGCCCCGCAACAGGCC
GAGCCTCCGGCGAAGGACACGCCGCAAAGCGACTCAAAGCATGGCCAGGC
ACCGCGCGCTGACCCGCTGCAATCTGAGGAAAAGCACAACGAGCAGCAAG
CCGACGTGTCGCAGGCCGAGCCTCCACAAACTCAGCCGCAGCAGGACCAG
TCGCAGCAGAGCCAGCCGCAGCAGAGCCCTTCTCAGCCGAGCCAGTCGCA
GCCAAGCCAGTCGCAGCAAGAAGAATCGCAACAAAGTCACGAGCAGCAGG
ACGAAGCGCAGCAAGGCAAACTCACGCCCGAAAGTATCGCGCCGGGCGCC
GGCGACTCACAGCCTGAGCAACCGCCGCAAGCTCAAACCGCGCAGGAAAA
CTCGTCCTCACCGCCCAGTCAACCCGAATCGCTTTCCAAACACTCCGCAC
AACCACCATTTAAGCCCTCCGTATCTACAGTTGGAATTGTGGGCGCTGTC
GCCACTGTCGTCGTCGCTGCCATCCTCGTTTGGTCAAAGTCAGGAAACAG
TCCGCTGTCAGCCGCGCAACTGGTCAGTCACGCTTACCAGCGCGTGCGCA
CTGAGGGGCGACGAGCGAACGCGTCGGCGCAGAGCTCCTCCGATGCGGAT
GGATGGAATGCGGGGTGGGATGATGACGATGAGGATTGGAATACCAATAC
TCAAAGCACAAAAGTTTGA
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protein sequence of Gvermi7973.t1

>Gvermi7973.t1 ID=Gvermi7973.t1|Name=Gvermi7973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=323bp
MSPVLFCIALALFFVAAAGAPAPLSPPHASVEQALARRRRAHRVAFVVHV
VHSAARQHAEDAGVPEQADAGRGAGSPAASHTRPDESAHSETPPAAPQQA
EPPAKDTPQSDSKHGQAPRADPLQSEEKHNEQQADVSQAEPPQTQPQQDQ
SQQSQPQQSPSQPSQSQPSQSQQEESQQSHEQQDEAQQGKLTPESIAPGA
GDSQPEQPPQAQTAQENSSSPPSQPESLSKHSAQPPFKPSVSTVGIVGAV
ATVVVAAILVWSKSGNSPLSAAQLVSHAYQRVRTEGRRANASAQSSSDAD
GWNAGWDDDDEDWNTNTQSTKV*
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mRNA from alignment at ScGOVlb_24226:411353..412321-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7973.t1 ID=Gvermi7973.t1|Name=Gvermi7973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=969bp|location=Sequence derived from alignment at ScGOVlb_24226:411353..412321- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCCCGTCCTGTTTTGCATCGCGCTCGCGCTCTTCTTCGTCGCCGC
GGCGGGCGCGCCCGCCCCGTTATCGCCGCCCCACGCCTCGGTGGAACAGG
CGCTTGCGCGGAGGCGCCGCGCCCACCGCGTCGCCTTTGTCGTGCACGTC
GTGCACAGCGCCGCCCGTCAGCACGCGGAGGACGCCGGCGTGCCGGAGCA
GGCGGATGCTGGCCGCGGCGCCGGGTCGCCGGCCGCCTCCCACACCCGCC
CCGACGAAAGCGCCCACAGTGAGACGCCGCCGGCGGCCCCGCAACAGGCC
GAGCCTCCGGCGAAGGACACGCCGCAAAGCGACTCAAAGCATGGCCAGGC
ACCGCGCGCTGACCCGCTGCAATCTGAGGAAAAGCACAACGAGCAGCAAG
CCGACGTGTCGCAGGCCGAGCCTCCACAAACTCAGCCGCAGCAGGACCAG
TCGCAGCAGAGCCAGCCGCAGCAGAGCCCTTCTCAGCCGAGCCAGTCGCA
GCCAAGCCAGTCGCAGCAAGAAGAATCGCAACAAAGTCACGAGCAGCAGG
ACGAAGCGCAGCAAGGCAAACTCACGCCCGAAAGTATCGCGCCGGGCGCC
GGCGACTCACAGCCTGAGCAACCGCCGCAAGCTCAAACCGCGCAGGAAAA
CTCGTCCTCACCGCCCAGTCAACCCGAATCGCTTTCCAAACACTCCGCAC
AACCACCATTTAAGCCCTCCGTATCTACAGTTGGAATTGTGGGCGCTGTC
GCCACTGTCGTCGTCGCTGCCATCCTCGTTTGGTCAAAGTCAGGAAACAG
TCCGCTGTCAGCCGCGCAACTGGTCAGTCACGCTTACCAGCGCGTGCGCA
CTGAGGGGCGACGAGCGAACGCGTCGGCGCAGAGCTCCTCCGATGCGGAT
GGATGGAATGCGGGGTGGGATGATGACGATGAGGATTGGAATACCAATAC
TCAAAGCACAAAAGTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:411353..412321-

>Gvermi7973.t1 ID=Gvermi7973.t1|Name=Gvermi7973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=969bp|location=Sequence derived from alignment at ScGOVlb_24226:411353..412321- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCCCGTCCTGTTTTGCATCGCGCTCGCGCTCTTCTTCGTCGCCGC
GGCGGGCGCGCCCGCCCCGTTATCGCCGCCCCACGCCTCGGTGGAACAGG
CGCTTGCGCGGAGGCGCCGCGCCCACCGCGTCGCCTTTGTCGTGCACGTC
GTGCACAGCGCCGCCCGTCAGCACGCGGAGGACGCCGGCGTGCCGGAGCA
GGCGGATGCTGGCCGCGGCGCCGGGTCGCCGGCCGCCTCCCACACCCGCC
CCGACGAAAGCGCCCACAGTGAGACGCCGCCGGCGGCCCCGCAACAGGCC
GAGCCTCCGGCGAAGGACACGCCGCAAAGCGACTCAAAGCATGGCCAGGC
ACCGCGCGCTGACCCGCTGCAATCTGAGGAAAAGCACAACGAGCAGCAAG
CCGACGTGTCGCAGGCCGAGCCTCCACAAACTCAGCCGCAGCAGGACCAG
TCGCAGCAGAGCCAGCCGCAGCAGAGCCCTTCTCAGCCGAGCCAGTCGCA
GCCAAGCCAGTCGCAGCAAGAAGAATCGCAACAAAGTCACGAGCAGCAGG
ACGAAGCGCAGCAAGGCAAACTCACGCCCGAAAGTATCGCGCCGGGCGCC
GGCGACTCACAGCCTGAGCAACCGCCGCAAGCTCAAACCGCGCAGGAAAA
CTCGTCCTCACCGCCCAGTCAACCCGAATCGCTTTCCAAACACTCCGCAC
AACCACCATTTAAGCCCTCCGTATCTACAGTTGGAATTGTGGGCGCTGTC
GCCACTGTCGTCGTCGCTGCCATCCTCGTTTGGTCAAAGTCAGGAAACAG
TCCGCTGTCAGCCGCGCAACTGGTCAGTCACGCTTACCAGCGCGTGCGCA
CTGAGGGGCGACGAGCGAACGCGTCGGCGCAGAGCTCCTCCGATGCGGAT
GGATGGAATGCGGGGTGGGATGATGACGATGAGGATTGGAATACCAATAC
TCAAAGCACAAAAGTTTGA
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