Gvermi7946.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7946.t1
Unique Name	Gvermi7946.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	517

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:276002..277552 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMC020CT
PFAMs	5_nucleotid
Max annot lvl	2759\|Eukaryota
Evalue	1.01e-180
EggNOG OGs	KOG2469@1\|root,KOG2469@2759\|Eukaryota
Description	5'-nucleotidase activity
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7946	Gvermi7946	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 276002..277552 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7946.t1.start1	Gvermi7946.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 276002..276004 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7946.t1.CDS1	Gvermi7946.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 276002..277552 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7946.t1.exon1	Gvermi7946.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 276002..277552 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7946.t1.stop1	Gvermi7946.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 277550..277552 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7946.t1	Gvermi7946.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 276002..277552 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:276002..277552+
coding sequence from alignment at ScGOVlb_24226:276002..277552+

mRNA sequence

>Gvermi7946.t1 ID=Gvermi7946.t1|Name=Gvermi7946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=517bp
MSYNTASPLLSVADGTNEYRGEILCNRALNMSKLKAIGFDMDYTLAMYNS
EQFETLSATHALEKLVHNLGYPQPLLATKYDHSYFIRGLVVDKEHGNILK
LDRHKYVKRALHGFRQLSKKERTEMYDKITKSGGGFSEPRFAVLDAMFAL
PDAFLFSAVVQYKDDHPHQITQNYMQIYKDVRTSVDMCHRDGSIKDKVAK
DPKRFILRDPTLIPMLRKLRRSGRKVFLLTNSLWNYTDVVMSYLYEVEPT
GQWIDLFDVIITGSAKPAFLLNPRLPLFRCNPVDGTLSNTEGVYGETPEE
YLARGKCFQGGNYTHLHDMLRIRNGTHLLYVGDHIYSDVLRTKRTLGWRT
MLIVPELEHEINTIYDRKTSALRAELEDMRDKRNDLDEWVDRLEGELVSG
RSLSPAKTADIQQELTVARKELESSHDEIARLVDEYHGTFHPIWGQLFKT
GMQNSRFAEQVEDYACLYTSRVTNIDLVSPEMSWREMNDLMPHDRLAESP
MHRLLSRRSRSNSPVL*

spliced messenger RNA

>Gvermi7946.t1 ID=Gvermi7946.t1|Name=Gvermi7946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1551bp|location=Sequence derived from alignment at ScGOVlb_24226:276002..277552+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTACAACACCGCGTCGCCGTTGCTCAGCGTCGCCGACGGCACCAA
CGAGTACCGCGGCGAGATTCTGTGCAACAGGGCTCTCAACATGTCCAAGT
TGAAGGCAATCGGCTTCGACATGGACTACACGCTCGCCATGTACAACAGC
GAGCAGTTTGAAACCCTCTCCGCCACCCATGCCCTGGAAAAACTCGTCCA
CAACCTAGGCTATCCGCAGCCGTTGCTTGCCACCAAGTATGACCATTCGT
ACTTCATTCGCGGTCTTGTCGTCGACAAGGAGCATGGAAACATTCTCAAA
CTTGACCGCCACAAGTACGTCAAGCGCGCCCTGCACGGGTTTCGACAACT
GTCCAAGAAGGAGCGAACTGAAATGTACGACAAGATAACAAAGTCCGGCG
GCGGTTTCTCCGAACCGCGATTTGCGGTGCTTGACGCCATGTTTGCCTTG
CCGGACGCCTTCTTGTTCAGCGCCGTTGTGCAGTATAAGGACGATCACCC
GCACCAAATCACTCAGAATTACATGCAGATCTACAAGGACGTCAGAACCA
GTGTCGACATGTGTCATCGCGATGGTTCCATCAAAGATAAGGTTGCCAAA
GATCCAAAGCGATTCATATTGAGAGATCCCACTCTTATTCCAATGCTTAG
GAAACTGAGGCGGTCTGGAAGAAAAGTTTTCCTTCTCACCAACTCCCTGT
GGAACTACACTGATGTCGTTATGTCATACCTGTACGAAGTAGAACCCACT
GGACAGTGGATTGATTTATTCGATGTCATCATCACAGGCTCTGCCAAGCC
GGCCTTTCTGCTCAATCCGAGGTTACCCTTGTTCCGTTGCAATCCCGTCG
ACGGCACATTGTCAAACACCGAGGGCGTTTACGGGGAAACCCCGGAAGAA
TACCTTGCCCGCGGCAAATGTTTCCAAGGCGGCAACTACACGCATCTCCA
CGATATGCTCAGAATTCGCAACGGCACTCACCTCCTCTACGTGGGGGATC
ATATCTACTCGGATGTACTGCGGACGAAGCGCACGCTTGGCTGGAGGACC
ATGCTCATTGTGCCGGAATTGGAGCATGAAATTAACACCATTTACGACCG
AAAAACCAGCGCGCTCCGGGCAGAGCTTGAAGATATGAGAGATAAAAGAA
ATGATTTGGATGAGTGGGTGGATCGGTTGGAAGGTGAGCTTGTGAGCGGC
CGCAGCCTGTCACCCGCTAAAACAGCAGATATTCAACAGGAGTTGACGGT
GGCGCGTAAAGAACTCGAGAGCTCTCACGACGAAATTGCGAGGCTCGTCG
ATGAGTACCATGGCACCTTTCATCCTATCTGGGGACAACTGTTCAAAACG
GGTATGCAAAACTCTCGTTTTGCCGAACAAGTTGAGGATTATGCTTGTCT
GTACACGAGTCGGGTCACTAACATTGACTTGGTCAGTCCTGAAATGTCGT
GGCGAGAGATGAACGACTTGATGCCTCATGATCGTCTTGCGGAGTCCCCA
ATGCATCGCCTGCTGTCGCGTCGATCAAGGTCAAACTCACCAGTTCTGTA
G

protein sequence of Gvermi7946.t1

>Gvermi7946.t1 ID=Gvermi7946.t1|Name=Gvermi7946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=517bp
MSYNTASPLLSVADGTNEYRGEILCNRALNMSKLKAIGFDMDYTLAMYNS
EQFETLSATHALEKLVHNLGYPQPLLATKYDHSYFIRGLVVDKEHGNILK
LDRHKYVKRALHGFRQLSKKERTEMYDKITKSGGGFSEPRFAVLDAMFAL
PDAFLFSAVVQYKDDHPHQITQNYMQIYKDVRTSVDMCHRDGSIKDKVAK
DPKRFILRDPTLIPMLRKLRRSGRKVFLLTNSLWNYTDVVMSYLYEVEPT
GQWIDLFDVIITGSAKPAFLLNPRLPLFRCNPVDGTLSNTEGVYGETPEE
YLARGKCFQGGNYTHLHDMLRIRNGTHLLYVGDHIYSDVLRTKRTLGWRT
MLIVPELEHEINTIYDRKTSALRAELEDMRDKRNDLDEWVDRLEGELVSG
RSLSPAKTADIQQELTVARKELESSHDEIARLVDEYHGTFHPIWGQLFKT
GMQNSRFAEQVEDYACLYTSRVTNIDLVSPEMSWREMNDLMPHDRLAESP
MHRLLSRRSRSNSPVL*

mRNA from alignment at ScGOVlb_24226:276002..277552+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7946.t1 ID=Gvermi7946.t1|Name=Gvermi7946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1551bp|location=Sequence derived from alignment at ScGOVlb_24226:276002..277552+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTTACAACACCGCGTCGCCGTTGCTCAGCGTCGCCGACGGCACCAA
CGAGTACCGCGGCGAGATTCTGTGCAACAGGGCTCTCAACATGTCCAAGT
TGAAGGCAATCGGCTTCGACATGGACTACACGCTCGCCATGTACAACAGC
GAGCAGTTTGAAACCCTCTCCGCCACCCATGCCCTGGAAAAACTCGTCCA
CAACCTAGGCTATCCGCAGCCGTTGCTTGCCACCAAGTATGACCATTCGT
ACTTCATTCGCGGTCTTGTCGTCGACAAGGAGCATGGAAACATTCTCAAA
CTTGACCGCCACAAGTACGTCAAGCGCGCCCTGCACGGGTTTCGACAACT
GTCCAAGAAGGAGCGAACTGAAATGTACGACAAGATAACAAAGTCCGGCG
GCGGTTTCTCCGAACCGCGATTTGCGGTGCTTGACGCCATGTTTGCCTTG
CCGGACGCCTTCTTGTTCAGCGCCGTTGTGCAGTATAAGGACGATCACCC
GCACCAAATCACTCAGAATTACATGCAGATCTACAAGGACGTCAGAACCA
GTGTCGACATGTGTCATCGCGATGGTTCCATCAAAGATAAGGTTGCCAAA
GATCCAAAGCGATTCATATTGAGAGATCCCACTCTTATTCCAATGCTTAG
GAAACTGAGGCGGTCTGGAAGAAAAGTTTTCCTTCTCACCAACTCCCTGT
GGAACTACACTGATGTCGTTATGTCATACCTGTACGAAGTAGAACCCACT
GGACAGTGGATTGATTTATTCGATGTCATCATCACAGGCTCTGCCAAGCC
GGCCTTTCTGCTCAATCCGAGGTTACCCTTGTTCCGTTGCAATCCCGTCG
ACGGCACATTGTCAAACACCGAGGGCGTTTACGGGGAAACCCCGGAAGAA
TACCTTGCCCGCGGCAAATGTTTCCAAGGCGGCAACTACACGCATCTCCA
CGATATGCTCAGAATTCGCAACGGCACTCACCTCCTCTACGTGGGGGATC
ATATCTACTCGGATGTACTGCGGACGAAGCGCACGCTTGGCTGGAGGACC
ATGCTCATTGTGCCGGAATTGGAGCATGAAATTAACACCATTTACGACCG
AAAAACCAGCGCGCTCCGGGCAGAGCTTGAAGATATGAGAGATAAAAGAA
ATGATTTGGATGAGTGGGTGGATCGGTTGGAAGGTGAGCTTGTGAGCGGC
CGCAGCCTGTCACCCGCTAAAACAGCAGATATTCAACAGGAGTTGACGGT
GGCGCGTAAAGAACTCGAGAGCTCTCACGACGAAATTGCGAGGCTCGTCG
ATGAGTACCATGGCACCTTTCATCCTATCTGGGGACAACTGTTCAAAACG
GGTATGCAAAACTCTCGTTTTGCCGAACAAGTTGAGGATTATGCTTGTCT
GTACACGAGTCGGGTCACTAACATTGACTTGGTCAGTCCTGAAATGTCGT
GGCGAGAGATGAACGACTTGATGCCTCATGATCGTCTTGCGGAGTCCCCA
ATGCATCGCCTGCTGTCGCGTCGATCAAGGTCAAACTCACCAGTTCTGTA
G

Coding sequence (CDS) from alignment at ScGOVlb_24226:276002..277552+

>Gvermi7946.t1 ID=Gvermi7946.t1|Name=Gvermi7946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1551bp|location=Sequence derived from alignment at ScGOVlb_24226:276002..277552+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTTACAACACCGCGTCGCCGTTGCTCAGCGTCGCCGACGGCACCAA
CGAGTACCGCGGCGAGATTCTGTGCAACAGGGCTCTCAACATGTCCAAGT
TGAAGGCAATCGGCTTCGACATGGACTACACGCTCGCCATGTACAACAGC
GAGCAGTTTGAAACCCTCTCCGCCACCCATGCCCTGGAAAAACTCGTCCA
CAACCTAGGCTATCCGCAGCCGTTGCTTGCCACCAAGTATGACCATTCGT
ACTTCATTCGCGGTCTTGTCGTCGACAAGGAGCATGGAAACATTCTCAAA
CTTGACCGCCACAAGTACGTCAAGCGCGCCCTGCACGGGTTTCGACAACT
GTCCAAGAAGGAGCGAACTGAAATGTACGACAAGATAACAAAGTCCGGCG
GCGGTTTCTCCGAACCGCGATTTGCGGTGCTTGACGCCATGTTTGCCTTG
CCGGACGCCTTCTTGTTCAGCGCCGTTGTGCAGTATAAGGACGATCACCC
GCACCAAATCACTCAGAATTACATGCAGATCTACAAGGACGTCAGAACCA
GTGTCGACATGTGTCATCGCGATGGTTCCATCAAAGATAAGGTTGCCAAA
GATCCAAAGCGATTCATATTGAGAGATCCCACTCTTATTCCAATGCTTAG
GAAACTGAGGCGGTCTGGAAGAAAAGTTTTCCTTCTCACCAACTCCCTGT
GGAACTACACTGATGTCGTTATGTCATACCTGTACGAAGTAGAACCCACT
GGACAGTGGATTGATTTATTCGATGTCATCATCACAGGCTCTGCCAAGCC
GGCCTTTCTGCTCAATCCGAGGTTACCCTTGTTCCGTTGCAATCCCGTCG
ACGGCACATTGTCAAACACCGAGGGCGTTTACGGGGAAACCCCGGAAGAA
TACCTTGCCCGCGGCAAATGTTTCCAAGGCGGCAACTACACGCATCTCCA
CGATATGCTCAGAATTCGCAACGGCACTCACCTCCTCTACGTGGGGGATC
ATATCTACTCGGATGTACTGCGGACGAAGCGCACGCTTGGCTGGAGGACC
ATGCTCATTGTGCCGGAATTGGAGCATGAAATTAACACCATTTACGACCG
AAAAACCAGCGCGCTCCGGGCAGAGCTTGAAGATATGAGAGATAAAAGAA
ATGATTTGGATGAGTGGGTGGATCGGTTGGAAGGTGAGCTTGTGAGCGGC
CGCAGCCTGTCACCCGCTAAAACAGCAGATATTCAACAGGAGTTGACGGT
GGCGCGTAAAGAACTCGAGAGCTCTCACGACGAAATTGCGAGGCTCGTCG
ATGAGTACCATGGCACCTTTCATCCTATCTGGGGACAACTGTTCAAAACG
GGTATGCAAAACTCTCGTTTTGCCGAACAAGTTGAGGATTATGCTTGTCT
GTACACGAGTCGGGTCACTAACATTGACTTGGTCAGTCCTGAAATGTCGT
GGCGAGAGATGAACGACTTGATGCCTCATGATCGTCTTGCGGAGTCCCCA
ATGCATCGCCTGCTGTCGCGTCGATCAAGGTCAAACTCACCAGTTCTGTA
G