Gvermi8031.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8031.t1
Unique NameGvermi8031.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length209
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:761592..762218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FZR3
PFAMsPentapeptide
Max annot lvl2759|Eukaryota
Evalue1.87e-10
EggNOG OGs2CYH2@1|root,2S4CZ@2759|Eukaryota
DescriptionPentapeptide repeats (8 copies)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8031Gvermi8031Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 761592..762218 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8031.t1.start1Gvermi8031.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 761592..761594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8031.t1.CDS1Gvermi8031.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 761592..762218 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8031.t1.exon1Gvermi8031.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 761592..762218 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8031.t1.stop1Gvermi8031.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 762216..762218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8031.t1Gvermi8031.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 761592..762218 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8031.t1 ID=Gvermi8031.t1|Name=Gvermi8031.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=209bp
MMMFITSVSLQASAWLNRSTLKGATACKRSNTATMSATKSNDIPRRIATV
ITALAASASLTLAPSQAVSGGGKDFASQNWTGQTFHGSYSGKDFSGGLFR
GCDFAGSDLTNTRFFKAELREANMTGANLSYSSIEAAILRDTNLQDAVMV
GSYISDSILDVASIENADFTDALISPESAIVKLCEREDAKGVNSITGAST
RESLMCPE*
back to top

spliced messenger RNA

>Gvermi8031.t1 ID=Gvermi8031.t1|Name=Gvermi8031.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=627bp|location=Sequence derived from alignment at ScGOVlb_24226:761592..762218+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGATGTTTATCACATCAGTTTCACTTCAAGCAAGTGCTTGGCTCAA
CCGTTCCACTCTCAAAGGTGCAACTGCATGCAAACGCAGCAACACCGCCA
CAATGAGCGCCACAAAGAGCAATGACATACCCCGCCGAATCGCGACGGTC
ATAACTGCTCTAGCTGCGTCAGCTTCTTTAACCCTGGCGCCATCGCAAGC
TGTTTCAGGGGGTGGAAAGGATTTTGCATCCCAAAACTGGACTGGGCAGA
CTTTTCACGGCTCATATTCCGGTAAGGACTTCTCTGGTGGTCTCTTCCGC
GGATGCGATTTTGCCGGTAGCGACTTGACCAATACTCGTTTCTTTAAGGC
TGAACTGCGGGAAGCGAATATGACAGGAGCGAATTTAAGCTATTCAAGCA
TTGAAGCGGCCATTTTGAGGGACACCAATTTACAGGATGCTGTTATGGTC
GGCTCGTACATCTCTGATAGTATATTAGACGTTGCTAGCATAGAGAATGC
TGACTTCACCGATGCGTTAATAAGTCCTGAAAGTGCCATTGTCAAGCTTT
GCGAGAGAGAAGATGCCAAAGGTGTGAACTCAATCACAGGGGCTTCAACC
AGAGAAAGTCTCATGTGTCCCGAATAA
back to top

protein sequence of Gvermi8031.t1

>Gvermi8031.t1 ID=Gvermi8031.t1|Name=Gvermi8031.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=209bp
MMMFITSVSLQASAWLNRSTLKGATACKRSNTATMSATKSNDIPRRIATV
ITALAASASLTLAPSQAVSGGGKDFASQNWTGQTFHGSYSGKDFSGGLFR
GCDFAGSDLTNTRFFKAELREANMTGANLSYSSIEAAILRDTNLQDAVMV
GSYISDSILDVASIENADFTDALISPESAIVKLCEREDAKGVNSITGAST
RESLMCPE*
back to top

mRNA from alignment at ScGOVlb_24226:761592..762218+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8031.t1 ID=Gvermi8031.t1|Name=Gvermi8031.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=627bp|location=Sequence derived from alignment at ScGOVlb_24226:761592..762218+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGATGTTTATCACATCAGTTTCACTTCAAGCAAGTGCTTGGCTCAA
CCGTTCCACTCTCAAAGGTGCAACTGCATGCAAACGCAGCAACACCGCCA
CAATGAGCGCCACAAAGAGCAATGACATACCCCGCCGAATCGCGACGGTC
ATAACTGCTCTAGCTGCGTCAGCTTCTTTAACCCTGGCGCCATCGCAAGC
TGTTTCAGGGGGTGGAAAGGATTTTGCATCCCAAAACTGGACTGGGCAGA
CTTTTCACGGCTCATATTCCGGTAAGGACTTCTCTGGTGGTCTCTTCCGC
GGATGCGATTTTGCCGGTAGCGACTTGACCAATACTCGTTTCTTTAAGGC
TGAACTGCGGGAAGCGAATATGACAGGAGCGAATTTAAGCTATTCAAGCA
TTGAAGCGGCCATTTTGAGGGACACCAATTTACAGGATGCTGTTATGGTC
GGCTCGTACATCTCTGATAGTATATTAGACGTTGCTAGCATAGAGAATGC
TGACTTCACCGATGCGTTAATAAGTCCTGAAAGTGCCATTGTCAAGCTTT
GCGAGAGAGAAGATGCCAAAGGTGTGAACTCAATCACAGGGGCTTCAACC
AGAGAAAGTCTCATGTGTCCCGAATAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24226:761592..762218+

>Gvermi8031.t1 ID=Gvermi8031.t1|Name=Gvermi8031.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=627bp|location=Sequence derived from alignment at ScGOVlb_24226:761592..762218+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGATGTTTATCACATCAGTTTCACTTCAAGCAAGTGCTTGGCTCAA
CCGTTCCACTCTCAAAGGTGCAACTGCATGCAAACGCAGCAACACCGCCA
CAATGAGCGCCACAAAGAGCAATGACATACCCCGCCGAATCGCGACGGTC
ATAACTGCTCTAGCTGCGTCAGCTTCTTTAACCCTGGCGCCATCGCAAGC
TGTTTCAGGGGGTGGAAAGGATTTTGCATCCCAAAACTGGACTGGGCAGA
CTTTTCACGGCTCATATTCCGGTAAGGACTTCTCTGGTGGTCTCTTCCGC
GGATGCGATTTTGCCGGTAGCGACTTGACCAATACTCGTTTCTTTAAGGC
TGAACTGCGGGAAGCGAATATGACAGGAGCGAATTTAAGCTATTCAAGCA
TTGAAGCGGCCATTTTGAGGGACACCAATTTACAGGATGCTGTTATGGTC
GGCTCGTACATCTCTGATAGTATATTAGACGTTGCTAGCATAGAGAATGC
TGACTTCACCGATGCGTTAATAAGTCCTGAAAGTGCCATTGTCAAGCTTT
GCGAGAGAGAAGATGCCAAAGGTGTGAACTCAATCACAGGGGCTTCAACC
AGAGAAAGTCTCATGTGTCCCGAATAA
back to top