Gvermi8138.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8138.t1
Unique NameGvermi8138.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length217
Homology
BLAST of Gvermi8138.t1 vs. uniprot
Match: A0A3B4AX72_9GOBI (Frataxin, mitochondrial n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4AX72_9GOBI)

HSP 1 Score: 103 bits (258), Expect = 6.580e-25
Identity = 58/113 (51.33%), Postives = 73/113 (64.60%), Query Frame = 0
Query:   99 EHEFSATAEASLETISEVISNLSLDSVSCSDDFDVEFSQGVLTVSLG-DHGTYVLNTQTPNRQIWLSSPSSGPWRYAWNPRLSQWVSTRDGHSLADRLATELGDIFKGKVAFS 210
            E ++ A +  +L+ ++E + +L +D      DFDV FS GVLTV LG +HGTYV+N QTPNRQIWLSSPSSGP RY W      WV T DG SL   L++EL  IFK  +  S
Sbjct:   16 EAQYEALSRDTLDALAEHLEDL-MDQPFTGPDFDVSFSNGVLTVKLGAEHGTYVVNKQTPNRQIWLSSPSSGPKRYDWTGH--HWVYTHDGSSLHQLLSSELSSIFKTPIDLS 125          
BLAST of Gvermi8138.t1 vs. uniprot
Match: D8PN54_SCHCM (Ferroxidase n=1 Tax=Schizophyllum commune (strain H4-8 / FGSC 9210) TaxID=578458 RepID=D8PN54_SCHCM)

HSP 1 Score: 102 bits (254), Expect = 2.140e-24
Identity = 56/124 (45.16%), Postives = 76/124 (61.29%), Query Frame = 0
Query:   93 MNEEWPEHEFSATAEASLETISEVISNLSLDSVSCSDDFDVEFSQGVLTVSLGDHGTYVLNTQTPNRQIWLSSPSSGPWRYAWNPRLSQWVSTRDGHSLADRLATELGDIFKGKVAFSFSTLHS 216
            M  E P   + A ++A+++T+ + + NL LD +  S+ F+VE+S GVLT+ LG+HGTYV+N Q PN+QIWLSSP SGP RY + P    W   RDG +L D L  EL      KV    S + S
Sbjct:    1 MYSELPIERYHAISDATMDTMLDNLENL-LDDLGKSE-FEVEYSSGVLTLILGEHGTYVINKQPPNKQIWLSSPFSGPKRYDYEPEKDNWYYARDGRALGDLLNEELSKALDRKVDLGLSDVSS 122          
BLAST of Gvermi8138.t1 vs. uniprot
Match: UPI000A1C1F8C (frataxin, mitochondrial n=1 Tax=Boleophthalmus pectinirostris TaxID=150288 RepID=UPI000A1C1F8C)

HSP 1 Score: 103 bits (258), Expect = 5.100e-24
Identity = 58/113 (51.33%), Postives = 74/113 (65.49%), Query Frame = 0
Query:   99 EHEFSATAEASLETISEVISNLSLDSVSCSDDFDVEFSQGVLTVSLG-DHGTYVLNTQTPNRQIWLSSPSSGPWRYAWNPRLSQWVSTRDGHSLADRLATELGDIFKGKVAFS 210
            E ++ A +  +L+ ++E + +L +D      DFDV FS GVLTV LG +HGTYV+N QTPNRQIWLSSPSSGP RY W  +  +WV   DG SL   L++EL  IFK  V  S
Sbjct:   94 EAQYEALSRDTLDALAEHLEDL-MDQPFTGPDFDVSFSNGVLTVKLGAEHGTYVINKQTPNRQIWLSSPSSGPKRYDWTGQ--RWVYAHDGRSLHQLLSSELSSIFKTPVDLS 203          
BLAST of Gvermi8138.t1 vs. uniprot
Match: UPI00145BA36A (frataxin, mitochondrial n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=UPI00145BA36A)

HSP 1 Score: 103 bits (258), Expect = 5.480e-24
Identity = 58/113 (51.33%), Postives = 73/113 (64.60%), Query Frame = 0
Query:   99 EHEFSATAEASLETISEVISNLSLDSVSCSDDFDVEFSQGVLTVSLG-DHGTYVLNTQTPNRQIWLSSPSSGPWRYAWNPRLSQWVSTRDGHSLADRLATELGDIFKGKVAFS 210
            E ++ A +  +L+ ++E + +L +D      DFDV FS GVLTV LG +HGTYV+N QTPNRQIWLSSPSSGP RY W      WV T DG SL   L++EL  IFK  +  S
Sbjct:   97 EAQYEALSRDTLDALAEHLEDL-MDQPFTGPDFDVSFSNGVLTVKLGAEHGTYVVNKQTPNRQIWLSSPSSGPKRYDWTGH--HWVYTHDGSSLHQLLSSELSSIFKTPIDLS 206          
BLAST of Gvermi8138.t1 vs. uniprot
Match: A0A2H3IUQ7_WOLCO (Ferroxidase n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3IUQ7_WOLCO)

HSP 1 Score: 102 bits (253), Expect = 1.760e-23
Identity = 53/121 (43.80%), Postives = 78/121 (64.46%), Query Frame = 0
Query:   92 VMNEEWPEHEFSATAEASLETISEVISNLSLDSVSCSDDFDVEFSQGVLTVSLGDHGTYVLNTQTPNRQIWLSSPSSGPWRYAWNPRLSQWVSTRDGHSLADRLATELGDIFKGKVAFSFS 212
            V++ + P  ++ A A+A+++ + E + N +LDS+    +++VE+S GVLT+ LG  GTYV+N Q PN+QIWLSSP SGP RY ++P L  WV  RDG  ++  L  ELG  F G +    S
Sbjct:   64 VVHSDLPVQKYHAYADATMDQLLESLEN-ALDSIG-DPEYEVEYSSGVLTLKLGAKGTYVINKQPPNKQIWLSSPVSGPKRYDYSPALDDWVYGRDGRPMSALLEQELGSAFGGAIQLGIS 182          
BLAST of Gvermi8138.t1 vs. uniprot
Match: S9RCT7_SCHOY (Ferroxidase n=1 Tax=Schizosaccharomyces octosporus (strain yFS286) TaxID=483514 RepID=S9RCT7_SCHOY)

HSP 1 Score: 99.8 bits (247), Expect = 6.350e-23
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 0
Query:  101 EFSATAEASLETISEVISNLSLDSVSCSDDFDVEFSQGVLTVSLGDHGTYVLNTQTPNRQIWLSSPSSGPWRYAWNPRLSQWVSTRDGHSLADRLATELGDIFKGKVAF 209
            E+   A+ +LE  +    +L  +  S   D+D+E+S GVLT++LGDHGTYV+N Q P  Q+WLSSP SGP  Y W+     W STRD  ++++ LA E+GD F  K+ F
Sbjct:   47 EYHRLADDTLEVFNNTFEDLLEE--SGRRDYDIEYSSGVLTLNLGDHGTYVINKQPPAHQVWLSSPVSGPKHYEWSSNNKTWKSTRDDSTISEILAKEIGDAFSKKIEF 153          
BLAST of Gvermi8138.t1 vs. uniprot
Match: UPI0007BACDC2 (frataxin, mitochondrial-like n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007BACDC2)

HSP 1 Score: 100 bits (248), Expect = 1.020e-22
Identity = 55/113 (48.67%), Postives = 76/113 (67.26%), Query Frame = 0
Query:   99 EHEFSATAEASLETISEVISNLSLDSVSCSDDFDVEFSQGVLTVSLG-DHGTYVLNTQTPNRQIWLSSPSSGPWRYAWNPRLSQWVSTRDGHSLADRLATELGDIFKGKVAFS 210
            E E+   A+ +L+ ++E + +L+ +S +   D+DV FS GVLTV +G DHGTYV+N QTPNRQIWLSSP+SGP RY W  +  +WV   DG +L + L+ EL  IFK  +  S
Sbjct:   77 EKEYERLADETLDALAEYLEDLTDESFT-GMDYDVVFSNGVLTVKVGSDHGTYVINKQTPNRQIWLSSPTSGPKRYYWTGK--RWVYAHDGVALHNLLSKELSVIFKSNIDLS 186          
BLAST of Gvermi8138.t1 vs. uniprot
Match: A0A672NGR1_SINGR (Frataxin, mitochondrial n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672NGR1_SINGR)

HSP 1 Score: 98.2 bits (243), Expect = 1.080e-22
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 0
Query:   99 EHEFSATAEASLETISEVISNLSLDSVSCSDDFDVEFSQGVLTVSLG-DHGTYVLNTQTPNRQIWLSSPSSGPWRYAWNPRLSQWVSTRDGHSLADRLATELGDIFKGKVAFS 210
            E E+   A+ +L+ ++E + +L+ +S +   D+DV FS GVLTV +G DHGTYV+N QTPNRQIWLSSP+SGP RY W     +W+   DG +L + L+ EL  IFK  +  S
Sbjct:   14 EKEYERLADETLDALAEYLEDLTDESFT-GMDYDVVFSNGVLTVKVGSDHGTYVINKQTPNRQIWLSSPTSGPKRYYWTGE--RWLYAHDGVALHNLLSKELSVIFKSNIDLS 123          
BLAST of Gvermi8138.t1 vs. uniprot
Match: A0A0D2P4V7_HYPSF (Ferroxidase (Fragment) n=1 Tax=Hypholoma sublateritium (strain FD-334 SS-4) TaxID=945553 RepID=A0A0D2P4V7_HYPSF)

HSP 1 Score: 97.8 bits (242), Expect = 1.120e-22
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 0
Query:  101 EFSATAEASLETISEVISNLSLDSVSCSDDFDVEFSQGVLTVSLGDHGTYVLNTQTPNRQIWLSSPSSGPWRYAWNPRLSQWVSTRDGHSLADRLATELGDIFKGKVAFSF 211
            E+   A+ +++ + E +  L LD+ S +  ++V++  GVLT+ LG HGTYV+N Q PN+QIWLSSP SGP RY ++   SQWV  RDGH+    L  EL DIFK +V   F
Sbjct:    8 EYHYLADETMDDLVEALEEL-LDAESDAG-YEVDYHSGVLTLKLGAHGTYVINKQPPNKQIWLSSPLSGPKRYDYDSAHSQWVYARDGHTFDGLLTKELSDIFKKQVQLQF 116          
BLAST of Gvermi8138.t1 vs. uniprot
Match: W5PU52_SHEEP (Frataxin, mitochondrial n=8 Tax=Bovidae TaxID=9895 RepID=W5PU52_SHEEP)

HSP 1 Score: 100 bits (248), Expect = 1.880e-22
Identity = 57/110 (51.82%), Postives = 72/110 (65.45%), Query Frame = 0
Query:  102 FSATAEASLETISEVISNLSLDSVSCSDDFDVEFSQGVLTVSLG-DHGTYVLNTQTPNRQIWLSSPSSGPWRYAWNPRLSQWVSTRDGHSLADRLATELGDIFKGKVAFS 210
            +   AE +L++++E   +L+ D    S+D+DV F  GVLTV LG D GTYV+N QTPN+QIWLSSPSSGP RY W  R   WV + DG SL + LATEL    K K+  S
Sbjct:   96 YERLAEETLDSLAEFFEDLA-DKPYTSEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGR--NWVYSHDGMSLHELLATELTQALKTKMDLS 202          
The following BLAST results are available for this feature:
BLAST of Gvermi8138.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B4AX72_9GOBI6.580e-2551.33Frataxin, mitochondrial n=1 Tax=Periophthalmus mag... [more]
D8PN54_SCHCM2.140e-2445.16Ferroxidase n=1 Tax=Schizophyllum commune (strain ... [more]
UPI000A1C1F8C5.100e-2451.33frataxin, mitochondrial n=1 Tax=Boleophthalmus pec... [more]
UPI00145BA36A5.480e-2451.33frataxin, mitochondrial n=1 Tax=Periophthalmus mag... [more]
A0A2H3IUQ7_WOLCO1.760e-2343.80Ferroxidase n=1 Tax=Wolfiporia cocos (strain MD-10... [more]
S9RCT7_SCHOY6.350e-2344.95Ferroxidase n=1 Tax=Schizosaccharomyces octosporus... [more]
UPI0007BACDC21.020e-2248.67frataxin, mitochondrial-like n=1 Tax=Sinocyclochei... [more]
A0A672NGR1_SINGR1.080e-2247.79Frataxin, mitochondrial n=1 Tax=Sinocyclocheilus g... [more]
A0A0D2P4V7_HYPSF1.120e-2246.85Ferroxidase (Fragment) n=1 Tax=Hypholoma sublateri... [more]
W5PU52_SHEEP1.880e-2251.82Frataxin, mitochondrial n=8 Tax=Bovidae TaxID=9895... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002908Frataxin/CyaYPRINTSPR00904FRATAXINcoord: 97..115
score: 26.32
coord: 152..167
score: 81.25
coord: 137..152
score: 37.5
IPR002908Frataxin/CyaYSMARTSM01219Frataxin_Cyay_2coord: 97..210
e-value: 1.6E-38
score: 144.0
IPR002908Frataxin/CyaYTIGRFAMTIGR03421TIGR03421coord: 99..207
e-value: 9.3E-22
score: 74.9
IPR002908Frataxin/CyaYPFAMPF01491Frataxin_Cyaycoord: 99..206
e-value: 3.9E-31
score: 107.4
IPR002908Frataxin/CyaYPANTHERPTHR16821FRATAXINcoord: 74..210
IPR002908Frataxin/CyaYPROSITEPS50810FRATAXIN_2coord: 93..207
score: 25.835569
IPR017789FrataxinTIGRFAMTIGR03422TIGR03422coord: 101..200
e-value: 5.2E-30
score: 101.6
IPR036524Frataxin/CyaY superfamilyGENE3D3.30.920.10Frataxin/CyaYcoord: 92..215
e-value: 6.4E-37
score: 128.2
IPR036524Frataxin/CyaY superfamilySUPERFAMILY55387Frataxin/Nqo15-likecoord: 93..204
IPR020895Frataxin conserved sitePROSITEPS01344FRATAXIN_1coord: 151..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1207756..1208406 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8138.t1Gvermi8138.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 1207756..1208406 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8138.t1 ID=Gvermi8138.t1|Name=Gvermi8138.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=217bp
MLSRSSQKALNVVRMYELGFIRCSRLQHRSIAFSAFAKALVSIPYSQMNI
QTSVNSRYPLKSWMDKSVVSSLGNKHISLVRGLSSDSFLKDVMNEEWPEH
EFSATAEASLETISEVISNLSLDSVSCSDDFDVEFSQGVLTVSLGDHGTY
VLNTQTPNRQIWLSSPSSGPWRYAWNPRLSQWVSTRDGHSLADRLATELG
DIFKGKVAFSFSTLHS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002908Frataxin/CyaY
IPR017789Frataxin
IPR036524Frataxin/CyaY_sf
IPR020895Frataxin_CS