Gvermi7972.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7972.t1
Unique NameGvermi7972.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length386
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:410141..411298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S89_56V6.1
PFAMsDHQS
Max annot lvl35493|Streptophyta
Evalue3.09e-64
EggNOG OGsCOG1465@1|root,2QSUR@2759|Eukaryota,37NQ2@33090|Viridiplantae,3G7F2@35493|Streptophyta
Descriptionisoform X1
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7972Gvermi7972Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 410141..411298 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7972.t1.start1Gvermi7972.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 410141..410143 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7972.t1.CDS1Gvermi7972.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 410141..411298 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7972.t1.exon1Gvermi7972.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 410141..411298 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7972.t1.stop1Gvermi7972.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 411296..411298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7972.t1Gvermi7972.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 410141..411298 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7972.t1 ID=Gvermi7972.t1|Name=Gvermi7972.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=386bp
MAALAFSVGATPLFGSTSRTAVFNVRHASSSPCRRACVSMRAFWVQPPSK
TALTTALEHNLTHFVFTDKTFFDQCLPLARFESLFIPDSGHFENGLYCRI
TCAQDVANLMRQAKSYKTIIIHSEDWKIIPAENLIAACQQSRTCLLATVA
SAQEARTMFGMLQVGVHGCVLRTDDLAEIVSFAKLKRDMAHSAAATVRNL
TFAKVVKVCAVNVGERVCIDTCSMLAEDEGMLIGSSSQAMFVVLSEAAKT
AYVPSRPFRVNAGAVHSYCMLAGGSTKYLAEICAGDEVMIVSEFGKRSRT
AVVGRAKIESRPLLMIEALVEDEDNNKCNLFVQNAETVRLAVVDENGNGT
MQSVSTLQLGTRLLLRSDEKARHIGLPIEEDIIEK*
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spliced messenger RNA

>Gvermi7972.t1 ID=Gvermi7972.t1|Name=Gvermi7972.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at ScGOVlb_24226:410141..411298+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCCCTCGCCTTCTCCGTCGGTGCGACCCCGCTTTTCGGCAGCAC
ATCGCGCACAGCCGTGTTCAACGTACGACACGCTTCGTCTTCCCCGTGTC
GCCGAGCCTGTGTCTCGATGCGCGCCTTCTGGGTGCAGCCCCCGTCGAAG
ACAGCGCTCACCACAGCCTTAGAACACAACCTCACCCACTTTGTCTTCAC
AGACAAGACCTTCTTCGACCAATGCCTCCCCTTGGCCCGCTTCGAGTCGC
TCTTCATCCCCGATTCCGGCCACTTTGAGAACGGTCTCTACTGCCGCATA
ACGTGCGCTCAAGACGTGGCCAACCTCATGCGCCAGGCGAAAAGCTACAA
AACCATCATCATCCATTCGGAAGACTGGAAGATCATCCCGGCCGAAAATC
TCATAGCCGCCTGCCAACAGTCGCGCACGTGCTTACTGGCCACCGTCGCG
TCCGCGCAGGAGGCCCGCACCATGTTTGGCATGCTGCAGGTCGGCGTGCA
CGGCTGCGTTCTTCGGACGGACGACCTTGCCGAAATCGTCTCCTTTGCAA
AGCTCAAGCGAGACATGGCGCACAGCGCGGCCGCCACCGTGCGCAATCTC
ACCTTCGCCAAGGTCGTCAAAGTGTGCGCTGTCAACGTGGGAGAGCGCGT
GTGCATCGATACGTGCTCCATGCTGGCGGAGGACGAGGGCATGCTCATCG
GCTCCTCGTCGCAGGCCATGTTCGTGGTGCTGTCCGAGGCTGCCAAAACG
GCCTACGTGCCGAGCCGCCCGTTCCGGGTAAACGCCGGCGCCGTGCACTC
GTACTGCATGCTGGCCGGCGGCAGCACAAAATACCTTGCCGAGATCTGCG
CGGGCGATGAAGTGATGATCGTCAGCGAGTTTGGAAAAAGGAGCCGAACA
GCGGTAGTAGGAAGGGCCAAAATTGAGAGCAGGCCCTTGCTCATGATTGA
GGCGCTCGTTGAAGATGAGGACAACAACAAATGCAACCTGTTCGTGCAGA
ACGCCGAGACGGTCCGACTGGCCGTGGTCGACGAAAACGGAAACGGGACC
ATGCAAAGCGTAAGCACATTGCAGCTGGGAACAAGACTGTTACTGAGGAG
CGATGAGAAAGCACGACACATCGGACTGCCTATCGAGGAGGACATAATCG
AAAAATAA
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protein sequence of Gvermi7972.t1

>Gvermi7972.t1 ID=Gvermi7972.t1|Name=Gvermi7972.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=386bp
MAALAFSVGATPLFGSTSRTAVFNVRHASSSPCRRACVSMRAFWVQPPSK
TALTTALEHNLTHFVFTDKTFFDQCLPLARFESLFIPDSGHFENGLYCRI
TCAQDVANLMRQAKSYKTIIIHSEDWKIIPAENLIAACQQSRTCLLATVA
SAQEARTMFGMLQVGVHGCVLRTDDLAEIVSFAKLKRDMAHSAAATVRNL
TFAKVVKVCAVNVGERVCIDTCSMLAEDEGMLIGSSSQAMFVVLSEAAKT
AYVPSRPFRVNAGAVHSYCMLAGGSTKYLAEICAGDEVMIVSEFGKRSRT
AVVGRAKIESRPLLMIEALVEDEDNNKCNLFVQNAETVRLAVVDENGNGT
MQSVSTLQLGTRLLLRSDEKARHIGLPIEEDIIEK*
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mRNA from alignment at ScGOVlb_24226:410141..411298+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7972.t1 ID=Gvermi7972.t1|Name=Gvermi7972.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at ScGOVlb_24226:410141..411298+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGCCCTCGCCTTCTCCGTCGGTGCGACCCCGCTTTTCGGCAGCAC
ATCGCGCACAGCCGTGTTCAACGTACGACACGCTTCGTCTTCCCCGTGTC
GCCGAGCCTGTGTCTCGATGCGCGCCTTCTGGGTGCAGCCCCCGTCGAAG
ACAGCGCTCACCACAGCCTTAGAACACAACCTCACCCACTTTGTCTTCAC
AGACAAGACCTTCTTCGACCAATGCCTCCCCTTGGCCCGCTTCGAGTCGC
TCTTCATCCCCGATTCCGGCCACTTTGAGAACGGTCTCTACTGCCGCATA
ACGTGCGCTCAAGACGTGGCCAACCTCATGCGCCAGGCGAAAAGCTACAA
AACCATCATCATCCATTCGGAAGACTGGAAGATCATCCCGGCCGAAAATC
TCATAGCCGCCTGCCAACAGTCGCGCACGTGCTTACTGGCCACCGTCGCG
TCCGCGCAGGAGGCCCGCACCATGTTTGGCATGCTGCAGGTCGGCGTGCA
CGGCTGCGTTCTTCGGACGGACGACCTTGCCGAAATCGTCTCCTTTGCAA
AGCTCAAGCGAGACATGGCGCACAGCGCGGCCGCCACCGTGCGCAATCTC
ACCTTCGCCAAGGTCGTCAAAGTGTGCGCTGTCAACGTGGGAGAGCGCGT
GTGCATCGATACGTGCTCCATGCTGGCGGAGGACGAGGGCATGCTCATCG
GCTCCTCGTCGCAGGCCATGTTCGTGGTGCTGTCCGAGGCTGCCAAAACG
GCCTACGTGCCGAGCCGCCCGTTCCGGGTAAACGCCGGCGCCGTGCACTC
GTACTGCATGCTGGCCGGCGGCAGCACAAAATACCTTGCCGAGATCTGCG
CGGGCGATGAAGTGATGATCGTCAGCGAGTTTGGAAAAAGGAGCCGAACA
GCGGTAGTAGGAAGGGCCAAAATTGAGAGCAGGCCCTTGCTCATGATTGA
GGCGCTCGTTGAAGATGAGGACAACAACAAATGCAACCTGTTCGTGCAGA
ACGCCGAGACGGTCCGACTGGCCGTGGTCGACGAAAACGGAAACGGGACC
ATGCAAAGCGTAAGCACATTGCAGCTGGGAACAAGACTGTTACTGAGGAG
CGATGAGAAAGCACGACACATCGGACTGCCTATCGAGGAGGACATAATCG
AAAAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:410141..411298+

>Gvermi7972.t1 ID=Gvermi7972.t1|Name=Gvermi7972.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1158bp|location=Sequence derived from alignment at ScGOVlb_24226:410141..411298+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGCCCTCGCCTTCTCCGTCGGTGCGACCCCGCTTTTCGGCAGCAC
ATCGCGCACAGCCGTGTTCAACGTACGACACGCTTCGTCTTCCCCGTGTC
GCCGAGCCTGTGTCTCGATGCGCGCCTTCTGGGTGCAGCCCCCGTCGAAG
ACAGCGCTCACCACAGCCTTAGAACACAACCTCACCCACTTTGTCTTCAC
AGACAAGACCTTCTTCGACCAATGCCTCCCCTTGGCCCGCTTCGAGTCGC
TCTTCATCCCCGATTCCGGCCACTTTGAGAACGGTCTCTACTGCCGCATA
ACGTGCGCTCAAGACGTGGCCAACCTCATGCGCCAGGCGAAAAGCTACAA
AACCATCATCATCCATTCGGAAGACTGGAAGATCATCCCGGCCGAAAATC
TCATAGCCGCCTGCCAACAGTCGCGCACGTGCTTACTGGCCACCGTCGCG
TCCGCGCAGGAGGCCCGCACCATGTTTGGCATGCTGCAGGTCGGCGTGCA
CGGCTGCGTTCTTCGGACGGACGACCTTGCCGAAATCGTCTCCTTTGCAA
AGCTCAAGCGAGACATGGCGCACAGCGCGGCCGCCACCGTGCGCAATCTC
ACCTTCGCCAAGGTCGTCAAAGTGTGCGCTGTCAACGTGGGAGAGCGCGT
GTGCATCGATACGTGCTCCATGCTGGCGGAGGACGAGGGCATGCTCATCG
GCTCCTCGTCGCAGGCCATGTTCGTGGTGCTGTCCGAGGCTGCCAAAACG
GCCTACGTGCCGAGCCGCCCGTTCCGGGTAAACGCCGGCGCCGTGCACTC
GTACTGCATGCTGGCCGGCGGCAGCACAAAATACCTTGCCGAGATCTGCG
CGGGCGATGAAGTGATGATCGTCAGCGAGTTTGGAAAAAGGAGCCGAACA
GCGGTAGTAGGAAGGGCCAAAATTGAGAGCAGGCCCTTGCTCATGATTGA
GGCGCTCGTTGAAGATGAGGACAACAACAAATGCAACCTGTTCGTGCAGA
ACGCCGAGACGGTCCGACTGGCCGTGGTCGACGAAAACGGAAACGGGACC
ATGCAAAGCGTAAGCACATTGCAGCTGGGAACAAGACTGTTACTGAGGAG
CGATGAGAAAGCACGACACATCGGACTGCCTATCGAGGAGGACATAATCG
AAAAATAA
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