Gvermi8200.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8200.t1
Unique NameGvermi8200.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length240
Homology
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BLAST of Gvermi8200.t1 vs. uniprot
Match: R7QGX8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGX8_CHOCR)

HSP 1 Score: 182 bits (462), Expect = 3.280e-54
Identity = 98/196 (50.00%), Postives = 133/196 (67.86%), Query Frame = 0 
Query:   23 LYLALVCRAVPLEHVAFVILTSSYAALANYYVRRSLDFLPIASLSPRSLTPMRNSVRLLFPFTFVFSLGVPTMLLISAGSSPTDGTQTRLYPILAPHLFLMICQILVETVGSIFSTLFTLYVRFGSTVAFVVYRIPVALEWYRQAGRYARSEDAALLPPTILPLMQAAAILNIVYWLFALLCFLLLYCLPSIIRHP 218
            LYLA+  RAVPL HV FV +T+ YA+LANY+V R  +  P A L PRSL+P +NS RLLFPFT   SL  P +LL    S  T    ++L  ++APHLFLM+ QI++ET+G +    + LYVR G T+A V YR+ V + WY  A  + RS +A+ + P +  L+QA A+LN+V+W F+LLC+LLLYCLP++ R P
Sbjct:    2 LYLAVYLRAVPLSHVLFVCVTAGYASLANYFVLRDSNSFPAAPLRPRSLSPTKNSTRLLFPFTLFLSLVGPAVLLTI--SPATSQRPSQLQQVIAPHLFLMLSQIVMETIGFLLFNSYVLYVRLGVTIAMVSYRLRVIVTWYHMAVAWTRSVEASKVLPFVPSLVQATAVLNLVFWSFSLLCYLLLYCLPAVCREP 195
The following BLAST results are available for this feature:
BLAST of Gvermi8200.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QGX8_CHOCR3.280e-5450.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33829OSJNBA0044M19.10 PROTEINcoord: 28..215
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 135..155
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 195..215
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 130..134
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 216..239
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..79
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 28..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 80..100
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 101..111
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 112..129
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..27
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 156..194
NoneNo IPR availableTMHMMTMhelixcoord: 189..211
NoneNo IPR availableTMHMMTMhelixcoord: 115..137
NoneNo IPR availableTMHMMTMhelixcoord: 142..164
NoneNo IPR availableTMHMMTMhelixcoord: 78..100
NoneNo IPR availableTMHMMTMhelixcoord: 37..54
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1552030..1552749 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8200.t1Gvermi8200.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 1552030..1552749 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8200.t1 ID=Gvermi8200.t1|Name=Gvermi8200.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=240bp
MDLRPALRLAPLAFCTALLCAALYLALVCRAVPLEHVAFVILTSSYAALA
NYYVRRSLDFLPIASLSPRSLTPMRNSVRLLFPFTFVFSLGVPTMLLISA
GSSPTDGTQTRLYPILAPHLFLMICQILVETVGSIFSTLFTLYVRFGSTV
AFVVYRIPVALEWYRQAGRYARSEDAALLPPTILPLMQAAAILNIVYWLF
ALLCFLLLYCLPSIIRHPQTVLTSVKNERPSPVATSQDQ*
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