Gvermi8150.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8150.t1
Unique NameGvermi8150.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length466
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1280805..1282202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8150Gvermi8150Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1280805..1282202 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8150.t1.stop1Gvermi8150.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1280805..1280807 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8150.t1.CDS1Gvermi8150.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1280805..1282202 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8150.t1.exon1Gvermi8150.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1280805..1282202 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8150.t1.start1Gvermi8150.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1282200..1282202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8150.t1Gvermi8150.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1280805..1282202 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8150.t1 ID=Gvermi8150.t1|Name=Gvermi8150.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=466bp
MIRNNKLSYLTAQLPWYSFEIVRTSTSSLVTSVLITLVSYQTAAIVSDVV
LGFKKRHEAKLKYFAMIILTRYLSSPLSVLNSILRKDWLTRLYYNGEIPR
DTAISRDPEPIKIKTVLTMLVLLTVTPLIDVVLLALAMSRTHVLDFDEAG
FGAVSLGASERSNALETTPYLSHCRKAPFEKRSSDNLDVSFLLCETPLLP
EAEDINVTGVEIVIVDGYMISTRVILQGIAVLATKSARMQTIEGNYVVKA
TMGKSSSGLLVQTALEQFSGYCGATNITGTVPPKRSDQFTTQIQLLESVA
ISCNILSKDSTERIEVLGKITSALRERVTLVRSDMMLVRKESDVHGAFSE
ERSIMLLHRTQKNASLFALIISVVLLLSLRFIVRMTIASDVEEGLLGCIR
DQLPESSVASSLKAGEQRISFRRKYQVGDHGYYGMMQKQLPEVERFEKAI
VGAVDVLEPNEPDVC*
back to top

spliced messenger RNA

>Gvermi8150.t1 ID=Gvermi8150.t1|Name=Gvermi8150.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at ScGOVlb_24226:1280805..1282202- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACGAAACAACAAACTTTCCTACTTGACAGCTCAACTTCCATGGTA
TTCGTTTGAAATCGTACGGACATCGACGAGTTCTCTCGTCACTTCCGTTT
TGATTACATTGGTCTCCTACCAAACGGCTGCCATTGTGTCTGATGTTGTT
CTCGGATTCAAGAAGCGTCACGAAGCTAAGCTCAAGTATTTCGCTATGAT
TATTCTCACAAGGTACTTGTCTTCGCCTCTCTCGGTTTTGAACAGCATTC
TTCGTAAGGATTGGCTCACTCGCTTATACTACAATGGAGAAATTCCCAGA
GATACAGCTATATCACGCGATCCGGAACCTATCAAAATCAAGACCGTCCT
CACAATGTTGGTTCTTCTAACTGTCACACCTCTAATTGATGTTGTGCTTT
TGGCCCTTGCTATGTCAAGAACACATGTACTAGACTTCGATGAAGCTGGG
TTTGGCGCTGTCAGTCTCGGAGCATCTGAACGCTCTAACGCTCTTGAAAC
AACCCCGTATCTATCACACTGCAGAAAAGCCCCGTTCGAAAAGAGAAGCA
GTGATAATTTAGATGTTTCGTTTCTGCTCTGTGAAACTCCATTATTACCG
GAGGCTGAGGACATCAATGTGACCGGCGTTGAAATCGTAATAGTAGATGG
ATACATGATAAGCACAAGAGTCATACTTCAGGGGATTGCAGTCTTGGCAA
CAAAGTCAGCGCGCATGCAGACTATAGAAGGAAATTATGTGGTAAAGGCG
ACCATGGGAAAAAGCTCTTCTGGTCTACTTGTGCAAACTGCTCTCGAACA
GTTTTCTGGTTACTGTGGGGCAACGAATATTACTGGAACCGTACCCCCAA
AACGGAGCGACCAGTTTACGACGCAAATACAGCTGCTCGAATCCGTTGCC
ATCTCATGCAACATCCTTTCGAAGGACTCCACAGAGAGAATCGAAGTATT
GGGCAAGATCACTTCTGCTCTCAGAGAAAGAGTGACGTTGGTAAGGTCGG
ACATGATGTTGGTCCGCAAAGAATCGGATGTGCATGGCGCATTCTCAGAA
GAGAGAAGCATTATGCTTCTGCACAGAACTCAAAAAAATGCTTCATTGTT
TGCTCTCATTATTAGCGTCGTTTTGTTGTTGTCTCTACGATTCATTGTGC
GGATGACGATTGCAAGTGACGTGGAAGAAGGATTGCTGGGTTGTATTCGA
GACCAGTTGCCTGAATCAAGCGTTGCCTCTTCATTAAAAGCCGGCGAACA
GCGAATATCCTTTCGGAGGAAATACCAAGTGGGAGATCATGGGTATTATG
GCATGATGCAAAAACAACTGCCTGAAGTCGAACGATTTGAAAAAGCTATC
GTTGGAGCTGTAGATGTGTTGGAGCCGAATGAACCTGATGTCTGTTAA
back to top

protein sequence of Gvermi8150.t1

>Gvermi8150.t1 ID=Gvermi8150.t1|Name=Gvermi8150.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=466bp
MIRNNKLSYLTAQLPWYSFEIVRTSTSSLVTSVLITLVSYQTAAIVSDVV
LGFKKRHEAKLKYFAMIILTRYLSSPLSVLNSILRKDWLTRLYYNGEIPR
DTAISRDPEPIKIKTVLTMLVLLTVTPLIDVVLLALAMSRTHVLDFDEAG
FGAVSLGASERSNALETTPYLSHCRKAPFEKRSSDNLDVSFLLCETPLLP
EAEDINVTGVEIVIVDGYMISTRVILQGIAVLATKSARMQTIEGNYVVKA
TMGKSSSGLLVQTALEQFSGYCGATNITGTVPPKRSDQFTTQIQLLESVA
ISCNILSKDSTERIEVLGKITSALRERVTLVRSDMMLVRKESDVHGAFSE
ERSIMLLHRTQKNASLFALIISVVLLLSLRFIVRMTIASDVEEGLLGCIR
DQLPESSVASSLKAGEQRISFRRKYQVGDHGYYGMMQKQLPEVERFEKAI
VGAVDVLEPNEPDVC*
back to top

mRNA from alignment at ScGOVlb_24226:1280805..1282202-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8150.t1 ID=Gvermi8150.t1|Name=Gvermi8150.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at ScGOVlb_24226:1280805..1282202- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATACGAAACAACAAACTTTCCTACTTGACAGCTCAACTTCCATGGTA
TTCGTTTGAAATCGTACGGACATCGACGAGTTCTCTCGTCACTTCCGTTT
TGATTACATTGGTCTCCTACCAAACGGCTGCCATTGTGTCTGATGTTGTT
CTCGGATTCAAGAAGCGTCACGAAGCTAAGCTCAAGTATTTCGCTATGAT
TATTCTCACAAGGTACTTGTCTTCGCCTCTCTCGGTTTTGAACAGCATTC
TTCGTAAGGATTGGCTCACTCGCTTATACTACAATGGAGAAATTCCCAGA
GATACAGCTATATCACGCGATCCGGAACCTATCAAAATCAAGACCGTCCT
CACAATGTTGGTTCTTCTAACTGTCACACCTCTAATTGATGTTGTGCTTT
TGGCCCTTGCTATGTCAAGAACACATGTACTAGACTTCGATGAAGCTGGG
TTTGGCGCTGTCAGTCTCGGAGCATCTGAACGCTCTAACGCTCTTGAAAC
AACCCCGTATCTATCACACTGCAGAAAAGCCCCGTTCGAAAAGAGAAGCA
GTGATAATTTAGATGTTTCGTTTCTGCTCTGTGAAACTCCATTATTACCG
GAGGCTGAGGACATCAATGTGACCGGCGTTGAAATCGTAATAGTAGATGG
ATACATGATAAGCACAAGAGTCATACTTCAGGGGATTGCAGTCTTGGCAA
CAAAGTCAGCGCGCATGCAGACTATAGAAGGAAATTATGTGGTAAAGGCG
ACCATGGGAAAAAGCTCTTCTGGTCTACTTGTGCAAACTGCTCTCGAACA
GTTTTCTGGTTACTGTGGGGCAACGAATATTACTGGAACCGTACCCCCAA
AACGGAGCGACCAGTTTACGACGCAAATACAGCTGCTCGAATCCGTTGCC
ATCTCATGCAACATCCTTTCGAAGGACTCCACAGAGAGAATCGAAGTATT
GGGCAAGATCACTTCTGCTCTCAGAGAAAGAGTGACGTTGGTAAGGTCGG
ACATGATGTTGGTCCGCAAAGAATCGGATGTGCATGGCGCATTCTCAGAA
GAGAGAAGCATTATGCTTCTGCACAGAACTCAAAAAAATGCTTCATTGTT
TGCTCTCATTATTAGCGTCGTTTTGTTGTTGTCTCTACGATTCATTGTGC
GGATGACGATTGCAAGTGACGTGGAAGAAGGATTGCTGGGTTGTATTCGA
GACCAGTTGCCTGAATCAAGCGTTGCCTCTTCATTAAAAGCCGGCGAACA
GCGAATATCCTTTCGGAGGAAATACCAAGTGGGAGATCATGGGTATTATG
GCATGATGCAAAAACAACTGCCTGAAGTCGAACGATTTGAAAAAGCTATC
GTTGGAGCTGTAGATGTGTTGGAGCCGAATGAACCTGATGTCTGTTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24226:1280805..1282202-

>Gvermi8150.t1 ID=Gvermi8150.t1|Name=Gvermi8150.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1398bp|location=Sequence derived from alignment at ScGOVlb_24226:1280805..1282202- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATACGAAACAACAAACTTTCCTACTTGACAGCTCAACTTCCATGGTA
TTCGTTTGAAATCGTACGGACATCGACGAGTTCTCTCGTCACTTCCGTTT
TGATTACATTGGTCTCCTACCAAACGGCTGCCATTGTGTCTGATGTTGTT
CTCGGATTCAAGAAGCGTCACGAAGCTAAGCTCAAGTATTTCGCTATGAT
TATTCTCACAAGGTACTTGTCTTCGCCTCTCTCGGTTTTGAACAGCATTC
TTCGTAAGGATTGGCTCACTCGCTTATACTACAATGGAGAAATTCCCAGA
GATACAGCTATATCACGCGATCCGGAACCTATCAAAATCAAGACCGTCCT
CACAATGTTGGTTCTTCTAACTGTCACACCTCTAATTGATGTTGTGCTTT
TGGCCCTTGCTATGTCAAGAACACATGTACTAGACTTCGATGAAGCTGGG
TTTGGCGCTGTCAGTCTCGGAGCATCTGAACGCTCTAACGCTCTTGAAAC
AACCCCGTATCTATCACACTGCAGAAAAGCCCCGTTCGAAAAGAGAAGCA
GTGATAATTTAGATGTTTCGTTTCTGCTCTGTGAAACTCCATTATTACCG
GAGGCTGAGGACATCAATGTGACCGGCGTTGAAATCGTAATAGTAGATGG
ATACATGATAAGCACAAGAGTCATACTTCAGGGGATTGCAGTCTTGGCAA
CAAAGTCAGCGCGCATGCAGACTATAGAAGGAAATTATGTGGTAAAGGCG
ACCATGGGAAAAAGCTCTTCTGGTCTACTTGTGCAAACTGCTCTCGAACA
GTTTTCTGGTTACTGTGGGGCAACGAATATTACTGGAACCGTACCCCCAA
AACGGAGCGACCAGTTTACGACGCAAATACAGCTGCTCGAATCCGTTGCC
ATCTCATGCAACATCCTTTCGAAGGACTCCACAGAGAGAATCGAAGTATT
GGGCAAGATCACTTCTGCTCTCAGAGAAAGAGTGACGTTGGTAAGGTCGG
ACATGATGTTGGTCCGCAAAGAATCGGATGTGCATGGCGCATTCTCAGAA
GAGAGAAGCATTATGCTTCTGCACAGAACTCAAAAAAATGCTTCATTGTT
TGCTCTCATTATTAGCGTCGTTTTGTTGTTGTCTCTACGATTCATTGTGC
GGATGACGATTGCAAGTGACGTGGAAGAAGGATTGCTGGGTTGTATTCGA
GACCAGTTGCCTGAATCAAGCGTTGCCTCTTCATTAAAAGCCGGCGAACA
GCGAATATCCTTTCGGAGGAAATACCAAGTGGGAGATCATGGGTATTATG
GCATGATGCAAAAACAACTGCCTGAAGTCGAACGATTTGAAAAAGCTATC
GTTGGAGCTGTAGATGTGTTGGAGCCGAATGAACCTGATGTCTGTTAA
back to top