Gvermi7965.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7965.t1
Unique NameGvermi7965.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length449
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:333737..335083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog926569.ANT_24830
PFAMsCMAS
Max annot lvl200795|Chloroflexi
KEGG koko:K00574
Evalue6.2e-134
EggNOG OGsCOG2230@1|root,COG2230@2|Bacteria,2G8QA@200795|Chloroflexi
EC2.1.1.79
DescriptionMycolic acid cyclopropane synthetase
COG categoryH
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7965Gvermi7965Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 333737..335083 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7965.t1.start1Gvermi7965.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 333737..333739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7965.t1.CDS1Gvermi7965.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 333737..335083 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7965.t1.exon1Gvermi7965.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 333737..335083 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7965.t1.stop1Gvermi7965.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 335081..335083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7965.t1Gvermi7965.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 333737..335083 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7965.t1 ID=Gvermi7965.t1|Name=Gvermi7965.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=449bp
MANTKEVALPTHGPFVQQTLTFLSSIFANYPPTDFAFRLWDGTVWQKPDA
DAARFTVVLNHPAALRRMFLPPSDTRMARAYILGDFDIEGEASGALSLGQ
HLWQTWGWRDLLSNAVQLVRLPSDSSGGDEHAAQLQGALHSQDRDRSAIQ
FHYDLSNDFYSLWLDSRMVYSCAYFNDAADDIDTAQLNKLDMICRKLRLQ
PGERLLDIGCGWGALVIHAVLKYGVRALGVTLSEEQVQLARKRVQQAGIA
DRCHIELLDYRNIDESQPFDKMVSVGMVEHVGRSMLPTYFAKCFALLRNG
GVFLNHGITLLHDRFKSEREMKRGFFSRYIFPDGDVQPVVYVLQHAAAAG
WEIRDVESLREHYALTLDRWHARLVQHEAEAVQMMGRQTFRLWKLYLLSA
GWGFTSGLHSIYQTLLYKATDVAAPRLPLTRSDWYAHSEGGGQQRARE*
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spliced messenger RNA

>Gvermi7965.t1 ID=Gvermi7965.t1|Name=Gvermi7965.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at ScGOVlb_24226:333737..335083+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAACACGAAAGAGGTGGCACTCCCCACGCATGGGCCGTTCGTACA
GCAAACGCTGACGTTTTTGAGCTCCATCTTCGCCAATTACCCGCCCACGG
ACTTTGCCTTCCGCCTTTGGGACGGCACGGTGTGGCAGAAGCCCGATGCC
GACGCTGCTCGCTTCACCGTGGTGCTCAACCATCCGGCCGCGCTGCGCCG
CATGTTTCTGCCGCCGTCGGACACCCGCATGGCTCGCGCATACATCCTCG
GCGACTTTGACATCGAGGGCGAGGCTTCCGGCGCCCTGTCGCTGGGGCAG
CACCTGTGGCAGACGTGGGGGTGGCGCGACTTGTTGTCCAACGCCGTCCA
GCTGGTCCGCCTGCCGTCCGACTCCAGCGGCGGCGACGAGCACGCCGCGC
AGCTGCAGGGCGCGCTGCACTCGCAGGATCGCGACAGGAGCGCCATCCAG
TTCCACTACGACCTGTCAAACGACTTTTACAGCCTGTGGCTGGACTCGCG
CATGGTGTACTCGTGCGCGTACTTCAACGACGCCGCGGACGACATCGACA
CGGCGCAGCTCAACAAGCTGGACATGATCTGCCGCAAgctgcgcctgcag
ccgggcgagcgcctgctggacatcgggtgcggctggggcgcgCTCGTCAT
CCACGCGGTGCTCAAGTACGGCGTGCGCGCGCTGGGCGTCACGCTGAGCG
AGGAGCAGGTGCAGCTGGCGCGCAAGCGCGTGCAGCAGGCGGGCATCGCG
GACCGCTGCCACATCGAGCTGCTGGACTACCGCAACATCGACGAGTCGCA
GCCGTTCGACAAGATGGTGAGCGTGGGCATGGTGGAGCACGTCGGGCGCA
GCATGCTGCCGACGTACTTTGCCAAGTGCTTTGCGCTGCTGCGCAACGGC
GGGGTGTTTCTCAACCACGGCATCACGCTGCTGCACGACCGGTTCAAGTC
GGAGCGCGAGATGAAGCGCGGCTTCTTCTCGCGCTACATCTTCCCGGACG
GCGACGTGCAGCCGGTGGTGTACGTGCTGCAGCACGCGGCGGCGGCCGGG
TGGGAGATCCGCGACGTGGAGAGCCTGCGCGAGCACTACGCGCTCACGCT
GGACCGGTGGCATGCGCGGCTGGTGCAGCACGAGGCGGAGGCGGTGCAAA
TGATGGGGAGGCAGACGTTCCGGCTGTGGAAGCTGTACCTGCTGAGCGCC
GGGTGGGGTTTTACAAGCGGTCTACACTCCATCTACCAGACGCTGTTGTA
CAAGGCGACGGACGTGGCGGCGCCGCGTCTGCCGCTCACCAGGAGCGACT
GGTACGCGCACAGCGAAGGCGGCGGCCAGCAGCGCGCGCGAGAGTAG
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protein sequence of Gvermi7965.t1

>Gvermi7965.t1 ID=Gvermi7965.t1|Name=Gvermi7965.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=449bp
MANTKEVALPTHGPFVQQTLTFLSSIFANYPPTDFAFRLWDGTVWQKPDA
DAARFTVVLNHPAALRRMFLPPSDTRMARAYILGDFDIEGEASGALSLGQ
HLWQTWGWRDLLSNAVQLVRLPSDSSGGDEHAAQLQGALHSQDRDRSAIQ
FHYDLSNDFYSLWLDSRMVYSCAYFNDAADDIDTAQLNKLDMICRKLRLQ
PGERLLDIGCGWGALVIHAVLKYGVRALGVTLSEEQVQLARKRVQQAGIA
DRCHIELLDYRNIDESQPFDKMVSVGMVEHVGRSMLPTYFAKCFALLRNG
GVFLNHGITLLHDRFKSEREMKRGFFSRYIFPDGDVQPVVYVLQHAAAAG
WEIRDVESLREHYALTLDRWHARLVQHEAEAVQMMGRQTFRLWKLYLLSA
GWGFTSGLHSIYQTLLYKATDVAAPRLPLTRSDWYAHSEGGGQQRARE*
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mRNA from alignment at ScGOVlb_24226:333737..335083+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7965.t1 ID=Gvermi7965.t1|Name=Gvermi7965.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at ScGOVlb_24226:333737..335083+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAAACACGAAAGAGGTGGCACTCCCCACGCATGGGCCGTTCGTACA
GCAAACGCTGACGTTTTTGAGCTCCATCTTCGCCAATTACCCGCCCACGG
ACTTTGCCTTCCGCCTTTGGGACGGCACGGTGTGGCAGAAGCCCGATGCC
GACGCTGCTCGCTTCACCGTGGTGCTCAACCATCCGGCCGCGCTGCGCCG
CATGTTTCTGCCGCCGTCGGACACCCGCATGGCTCGCGCATACATCCTCG
GCGACTTTGACATCGAGGGCGAGGCTTCCGGCGCCCTGTCGCTGGGGCAG
CACCTGTGGCAGACGTGGGGGTGGCGCGACTTGTTGTCCAACGCCGTCCA
GCTGGTCCGCCTGCCGTCCGACTCCAGCGGCGGCGACGAGCACGCCGCGC
AGCTGCAGGGCGCGCTGCACTCGCAGGATCGCGACAGGAGCGCCATCCAG
TTCCACTACGACCTGTCAAACGACTTTTACAGCCTGTGGCTGGACTCGCG
CATGGTGTACTCGTGCGCGTACTTCAACGACGCCGCGGACGACATCGACA
CGGCGCAGCTCAACAAGCTGGACATGATCTGCCGCAAgctgcgcctgcag
ccgggcgagcgcctgctggacatcgggtgcggctggggcgcgCTCGTCAT
CCACGCGGTGCTCAAGTACGGCGTGCGCGCGCTGGGCGTCACGCTGAGCG
AGGAGCAGGTGCAGCTGGCGCGCAAGCGCGTGCAGCAGGCGGGCATCGCG
GACCGCTGCCACATCGAGCTGCTGGACTACCGCAACATCGACGAGTCGCA
GCCGTTCGACAAGATGGTGAGCGTGGGCATGGTGGAGCACGTCGGGCGCA
GCATGCTGCCGACGTACTTTGCCAAGTGCTTTGCGCTGCTGCGCAACGGC
GGGGTGTTTCTCAACCACGGCATCACGCTGCTGCACGACCGGTTCAAGTC
GGAGCGCGAGATGAAGCGCGGCTTCTTCTCGCGCTACATCTTCCCGGACG
GCGACGTGCAGCCGGTGGTGTACGTGCTGCAGCACGCGGCGGCGGCCGGG
TGGGAGATCCGCGACGTGGAGAGCCTGCGCGAGCACTACGCGCTCACGCT
GGACCGGTGGCATGCGCGGCTGGTGCAGCACGAGGCGGAGGCGGTGCAAA
TGATGGGGAGGCAGACGTTCCGGCTGTGGAAGCTGTACCTGCTGAGCGCC
GGGTGGGGTTTTACAAGCGGTCTACACTCCATCTACCAGACGCTGTTGTA
CAAGGCGACGGACGTGGCGGCGCCGCGTCTGCCGCTCACCAGGAGCGACT
GGTACGCGCACAGCGAAGGCGGCGGCCAGCAGCGCGCGCGAGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:333737..335083+

>Gvermi7965.t1 ID=Gvermi7965.t1|Name=Gvermi7965.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1347bp|location=Sequence derived from alignment at ScGOVlb_24226:333737..335083+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAAACACGAAAGAGGTGGCACTCCCCACGCATGGGCCGTTCGTACA
GCAAACGCTGACGTTTTTGAGCTCCATCTTCGCCAATTACCCGCCCACGG
ACTTTGCCTTCCGCCTTTGGGACGGCACGGTGTGGCAGAAGCCCGATGCC
GACGCTGCTCGCTTCACCGTGGTGCTCAACCATCCGGCCGCGCTGCGCCG
CATGTTTCTGCCGCCGTCGGACACCCGCATGGCTCGCGCATACATCCTCG
GCGACTTTGACATCGAGGGCGAGGCTTCCGGCGCCCTGTCGCTGGGGCAG
CACCTGTGGCAGACGTGGGGGTGGCGCGACTTGTTGTCCAACGCCGTCCA
GCTGGTCCGCCTGCCGTCCGACTCCAGCGGCGGCGACGAGCACGCCGCGC
AGCTGCAGGGCGCGCTGCACTCGCAGGATCGCGACAGGAGCGCCATCCAG
TTCCACTACGACCTGTCAAACGACTTTTACAGCCTGTGGCTGGACTCGCG
CATGGTGTACTCGTGCGCGTACTTCAACGACGCCGCGGACGACATCGACA
CGGCGCAGCTCAACAAGCTGGACATGATCTGCCGCAAgctgcgcctgcag
ccgggcgagcgcctgctggacatcgggtgcggctggggcgcgCTCGTCAT
CCACGCGGTGCTCAAGTACGGCGTGCGCGCGCTGGGCGTCACGCTGAGCG
AGGAGCAGGTGCAGCTGGCGCGCAAGCGCGTGCAGCAGGCGGGCATCGCG
GACCGCTGCCACATCGAGCTGCTGGACTACCGCAACATCGACGAGTCGCA
GCCGTTCGACAAGATGGTGAGCGTGGGCATGGTGGAGCACGTCGGGCGCA
GCATGCTGCCGACGTACTTTGCCAAGTGCTTTGCGCTGCTGCGCAACGGC
GGGGTGTTTCTCAACCACGGCATCACGCTGCTGCACGACCGGTTCAAGTC
GGAGCGCGAGATGAAGCGCGGCTTCTTCTCGCGCTACATCTTCCCGGACG
GCGACGTGCAGCCGGTGGTGTACGTGCTGCAGCACGCGGCGGCGGCCGGG
TGGGAGATCCGCGACGTGGAGAGCCTGCGCGAGCACTACGCGCTCACGCT
GGACCGGTGGCATGCGCGGCTGGTGCAGCACGAGGCGGAGGCGGTGCAAA
TGATGGGGAGGCAGACGTTCCGGCTGTGGAAGCTGTACCTGCTGAGCGCC
GGGTGGGGTTTTACAAGCGGTCTACACTCCATCTACCAGACGCTGTTGTA
CAAGGCGACGGACGTGGCGGCGCCGCGTCTGCCGCTCACCAGGAGCGACT
GGTACGCGCACAGCGAAGGCGGCGGCCAGCAGCGCGCGCGAGAGTAG
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