Gvermi7992.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7992.t1
Unique Name	Gvermi7992.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	606

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:537916..539733 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ20512
PFAMs	WD40,zf-C3HC4_2
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K10143
KEGG Pathway	ko04115,ko04120,ko04712,map04115,map04120,map04712
GOs	GO:0000003,GO:0000151,GO:0000152,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009639,GO:0009640,GO:0009641,GO:0009642,GO:0009646,GO:0009647,GO:0009648,GO:0009649,GO:0009791,GO:0009812,GO:0009987,GO:0010119,GO:0010228,GO:0016567,GO:0016604,GO:0016740,GO:0019538,GO:0019787,GO:0022414,GO:0031461,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0036211,GO:0042440,GO:0042752,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046283,GO:0046483,GO:0048573,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061458,GO:0061630,GO:0061659,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080008,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1990234
Evalue	3.45e-93
EggNOG OGs	KOG0297@1\|root,KOG0297@2759\|Eukaryota,37JG1@33090\|Viridiplantae,3GD8D@35493\|Streptophyta
EC	2.3.2.27
Description	E3 ubiquitin-protein ligase
COG category	T
BRITE	ko00000,ko00001,ko01000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7992	Gvermi7992	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 537916..539733 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7992.t1.stop1	Gvermi7992.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 537916..537918 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7992.t1.CDS1	Gvermi7992.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 537916..539733 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7992.t1.exon1	Gvermi7992.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 537916..539733 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7992.t1.start1	Gvermi7992.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 539731..539733 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7992.t1	Gvermi7992.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 537916..539733 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:537916..539733-
coding sequence from alignment at ScGOVlb_24226:537916..539733-

mRNA sequence

>Gvermi7992.t1 ID=Gvermi7992.t1|Name=Gvermi7992.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=606bp
MLSPAAATPPRTPEAPRAALRSSPPPLNRHPRPALRPDTAERIARAQAAA
AAALASLPTPRTPLPQPQRHVFNQPPSTPAPPASLVRSEQLLAVGEQLSA
EQLAGVIAQLQHKLEQKEDVERVVENDLLLDFLRHVRTIKQRTIDRLQTE
VAFLDDDVTSAELHRARLRTPETSSTSSCASKAHREGAPLETVPASASIN
TSDPRFTKKRKRLSRNYDTLQTHYFSTVASQKGEKRAKALNSFKDDISKL
TQFTRFRDTATLMHVARVPDAPCRDVFKASNIVSSIEFDRESELLATAGV
TKRIKIFEFSNVKRNLSDVHYPIREIRTNAKLSWICWNPYIRHLLVSSDY
EGVVALWDVSQARALRVYEEHEKRVWSVDYCPTKPTIFASGSDDYRVKLW
CTTQRSSVLTIDNSRANVCSVKFHPTAPEKLAFGSADFGVHYYDLRMVKQ
PLHVFKSHTRAVSYVKFMSPTSLVSASVDSTVKLWDLDTMTLERNFTGHT
NDRNFVGLSVTPDYIACGSEEDMVYCYYKAIPRPFTGYRFSSVDPLTGRE
IHDDDDESQFVSSVCWCPKDPTKLVAANSLGTIKVLSLESDDSDDDDDDE
EQKGD*

spliced messenger RNA

>Gvermi7992.t1 ID=Gvermi7992.t1|Name=Gvermi7992.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1818bp|location=Sequence derived from alignment at ScGOVlb_24226:537916..539733- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTATCGCCCGCCGCCGCCACCCCCCCGCGCACGCCCGAAGCACCCCG
CGCTGCCCTCCGCTCCTCCCCCCCGCCTCTCAACCGTCACCCGCGCCCCG
CCCTTCGCCCTGACACCGCCGAGCGCATAGCTCGCGCGCAGGCCGCCGCC
GCTGCCGCGCTCGCGTCGCTGCCCACCCCGCGCACCCCGCTGCCGCAGCC
CCAGCGCCACGTCTTCAACCAGCCGCCTTCCACTCCCGCCCCGCCCGCCT
CGCTCGTTCGCAGTGAACAGCTGCTCGCTGTTGGAGAGCAGCTCAGTGCC
GAGCAGCTGGCCGGTGTCATCGCCCAGCTTCAGCACAAGCTGGAACAGAA
AGAGGACGTCGAACGTGTCGTTGAGAATGACCTTTTGTTGGATTTTCTGC
GCCATGTGCGAACCATCAAACAGCGCACGATTGATCGCCTGCAGACGGAG
GTTGCCTTTTTGGACGACGATGTGACTTCTGCGGAGTTGCATCGCGCCCG
CTTGCGCACCCCGGAGACTTCTTCCACCTCAAGTTGTGCGTCTAAAGCGC
ATAGAGAAGGAGCTCCGCTGGAAACTGTCCCTGCATCGGCTAGCATTAAC
ACCAGTGATCCGCGTTTCACAAAGAAGAGAAAGCGACTGTCCAGAAACTA
TGATACACTACAAACCCATTACTTTTCTACCGTTGCGTCTCAAAAGGGCG
AAAAGCGAGCAAAGGCCTTGAACTCTTTCAAGGACGACATCTCCAAGCTT
ACGCAGTTCACCCGCTTTCGAGACACTGCCACATTGATGCATGTTGCCCG
CGTCCCAGATGCTCCCTGTCGGGACGTTTTCAAGGCATCCAACATTGTTT
CCTCCATCGAGTTTGACCGCGAATCAGAACTGTTGGCCACTGCGGGAGTC
ACCAAACGCATCAAGATCTTTGAGTTTTCCAACGTCAAGCGCAACCTCTC
GGACGTTCACTATCCCATCCGCGAGATTAGGACGAACGCAAAGTTGAGCT
GGATTTGCTGGAACCCATACATCAGACATCTTCTCGTGTCATCCGATTAC
GAAGGTGTAGTTGCCCTGTGGGATGTGAGCCAAGCAAGGGCGCTTCGTGT
CTACGAAGAGCACGAGAAACGAGTGTGGAGCGTCGACTATTGCCCGACAA
AACCCACCATTTTTGCGTCAGGCTCCGATGACTACCGCGTCAAACTGTGG
TGTACTACGCAGAGGTCGAGCGTCCTCACTATCGATAATTCGCGCGCCAA
CGTATGCTCCGTTAAATTTCACCCTACCGCCCCCGAAAAACTGGCATTTG
GAAGCGCGGATTTCGGCGTCCATTACTACGACCTCCGCATGGTTAAACAG
CCTCTCCACGTATTTAAGTCGCATACGCGTGCTGTCAGTTACGTCAAGTT
CATGTCGCCGACGTCCCTGGTTTCTGCGTCTGTGGATTCGACGGTTAAGC
TCTGGGACTTGGATACGATGACGTTGGAACGCAATTTCACAGGTCATACG
AACGACAGAAACTTCGTGGGACTGAGCGTCACGCCGGACTATATCGCGTG
CGGCTCTGAAGAGGATATGGTCTACTGTTATTACAAAGCAATCCCGCGAC
CGTTCACAGGGTACCGGTTTTCGAGCGTTGATCCGTTGACCGGCAGGGAA
ATTCACGACGATGATGATGAGTCTCAGTTTGTGAGCAGCGTGTGCTGGTG
CCCAAAGGACCCCACAAAGCTTGTAGCCGCTAACAGCCTGGGCACAATCA
AGGTTCTATCCCTTGAATCGGATGATAGTGACGACGACGACGATGATGAA
GAGCAGAAGGGCGATTGA

protein sequence of Gvermi7992.t1

>Gvermi7992.t1 ID=Gvermi7992.t1|Name=Gvermi7992.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=606bp
MLSPAAATPPRTPEAPRAALRSSPPPLNRHPRPALRPDTAERIARAQAAA
AAALASLPTPRTPLPQPQRHVFNQPPSTPAPPASLVRSEQLLAVGEQLSA
EQLAGVIAQLQHKLEQKEDVERVVENDLLLDFLRHVRTIKQRTIDRLQTE
VAFLDDDVTSAELHRARLRTPETSSTSSCASKAHREGAPLETVPASASIN
TSDPRFTKKRKRLSRNYDTLQTHYFSTVASQKGEKRAKALNSFKDDISKL
TQFTRFRDTATLMHVARVPDAPCRDVFKASNIVSSIEFDRESELLATAGV
TKRIKIFEFSNVKRNLSDVHYPIREIRTNAKLSWICWNPYIRHLLVSSDY
EGVVALWDVSQARALRVYEEHEKRVWSVDYCPTKPTIFASGSDDYRVKLW
CTTQRSSVLTIDNSRANVCSVKFHPTAPEKLAFGSADFGVHYYDLRMVKQ
PLHVFKSHTRAVSYVKFMSPTSLVSASVDSTVKLWDLDTMTLERNFTGHT
NDRNFVGLSVTPDYIACGSEEDMVYCYYKAIPRPFTGYRFSSVDPLTGRE
IHDDDDESQFVSSVCWCPKDPTKLVAANSLGTIKVLSLESDDSDDDDDDE
EQKGD*

mRNA from alignment at ScGOVlb_24226:537916..539733-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7992.t1 ID=Gvermi7992.t1|Name=Gvermi7992.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1818bp|location=Sequence derived from alignment at ScGOVlb_24226:537916..539733- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTATCGCCCGCCGCCGCCACCCCCCCGCGCACGCCCGAAGCACCCCG
CGCTGCCCTCCGCTCCTCCCCCCCGCCTCTCAACCGTCACCCGCGCCCCG
CCCTTCGCCCTGACACCGCCGAGCGCATAGCTCGCGCGCAGGCCGCCGCC
GCTGCCGCGCTCGCGTCGCTGCCCACCCCGCGCACCCCGCTGCCGCAGCC
CCAGCGCCACGTCTTCAACCAGCCGCCTTCCACTCCCGCCCCGCCCGCCT
CGCTCGTTCGCAGTGAACAGCTGCTCGCTGTTGGAGAGCAGCTCAGTGCC
GAGCAGCTGGCCGGTGTCATCGCCCAGCTTCAGCACAAGCTGGAACAGAA
AGAGGACGTCGAACGTGTCGTTGAGAATGACCTTTTGTTGGATTTTCTGC
GCCATGTGCGAACCATCAAACAGCGCACGATTGATCGCCTGCAGACGGAG
GTTGCCTTTTTGGACGACGATGTGACTTCTGCGGAGTTGCATCGCGCCCG
CTTGCGCACCCCGGAGACTTCTTCCACCTCAAGTTGTGCGTCTAAAGCGC
ATAGAGAAGGAGCTCCGCTGGAAACTGTCCCTGCATCGGCTAGCATTAAC
ACCAGTGATCCGCGTTTCACAAAGAAGAGAAAGCGACTGTCCAGAAACTA
TGATACACTACAAACCCATTACTTTTCTACCGTTGCGTCTCAAAAGGGCG
AAAAGCGAGCAAAGGCCTTGAACTCTTTCAAGGACGACATCTCCAAGCTT
ACGCAGTTCACCCGCTTTCGAGACACTGCCACATTGATGCATGTTGCCCG
CGTCCCAGATGCTCCCTGTCGGGACGTTTTCAAGGCATCCAACATTGTTT
CCTCCATCGAGTTTGACCGCGAATCAGAACTGTTGGCCACTGCGGGAGTC
ACCAAACGCATCAAGATCTTTGAGTTTTCCAACGTCAAGCGCAACCTCTC
GGACGTTCACTATCCCATCCGCGAGATTAGGACGAACGCAAAGTTGAGCT
GGATTTGCTGGAACCCATACATCAGACATCTTCTCGTGTCATCCGATTAC
GAAGGTGTAGTTGCCCTGTGGGATGTGAGCCAAGCAAGGGCGCTTCGTGT
CTACGAAGAGCACGAGAAACGAGTGTGGAGCGTCGACTATTGCCCGACAA
AACCCACCATTTTTGCGTCAGGCTCCGATGACTACCGCGTCAAACTGTGG
TGTACTACGCAGAGGTCGAGCGTCCTCACTATCGATAATTCGCGCGCCAA
CGTATGCTCCGTTAAATTTCACCCTACCGCCCCCGAAAAACTGGCATTTG
GAAGCGCGGATTTCGGCGTCCATTACTACGACCTCCGCATGGTTAAACAG
CCTCTCCACGTATTTAAGTCGCATACGCGTGCTGTCAGTTACGTCAAGTT
CATGTCGCCGACGTCCCTGGTTTCTGCGTCTGTGGATTCGACGGTTAAGC
TCTGGGACTTGGATACGATGACGTTGGAACGCAATTTCACAGGTCATACG
AACGACAGAAACTTCGTGGGACTGAGCGTCACGCCGGACTATATCGCGTG
CGGCTCTGAAGAGGATATGGTCTACTGTTATTACAAAGCAATCCCGCGAC
CGTTCACAGGGTACCGGTTTTCGAGCGTTGATCCGTTGACCGGCAGGGAA
ATTCACGACGATGATGATGAGTCTCAGTTTGTGAGCAGCGTGTGCTGGTG
CCCAAAGGACCCCACAAAGCTTGTAGCCGCTAACAGCCTGGGCACAATCA
AGGTTCTATCCCTTGAATCGGATGATAGTGACGACGACGACGATGATGAA
GAGCAGAAGGGCGATTGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:537916..539733-

>Gvermi7992.t1 ID=Gvermi7992.t1|Name=Gvermi7992.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1818bp|location=Sequence derived from alignment at ScGOVlb_24226:537916..539733- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTATCGCCCGCCGCCGCCACCCCCCCGCGCACGCCCGAAGCACCCCG
CGCTGCCCTCCGCTCCTCCCCCCCGCCTCTCAACCGTCACCCGCGCCCCG
CCCTTCGCCCTGACACCGCCGAGCGCATAGCTCGCGCGCAGGCCGCCGCC
GCTGCCGCGCTCGCGTCGCTGCCCACCCCGCGCACCCCGCTGCCGCAGCC
CCAGCGCCACGTCTTCAACCAGCCGCCTTCCACTCCCGCCCCGCCCGCCT
CGCTCGTTCGCAGTGAACAGCTGCTCGCTGTTGGAGAGCAGCTCAGTGCC
GAGCAGCTGGCCGGTGTCATCGCCCAGCTTCAGCACAAGCTGGAACAGAA
AGAGGACGTCGAACGTGTCGTTGAGAATGACCTTTTGTTGGATTTTCTGC
GCCATGTGCGAACCATCAAACAGCGCACGATTGATCGCCTGCAGACGGAG
GTTGCCTTTTTGGACGACGATGTGACTTCTGCGGAGTTGCATCGCGCCCG
CTTGCGCACCCCGGAGACTTCTTCCACCTCAAGTTGTGCGTCTAAAGCGC
ATAGAGAAGGAGCTCCGCTGGAAACTGTCCCTGCATCGGCTAGCATTAAC
ACCAGTGATCCGCGTTTCACAAAGAAGAGAAAGCGACTGTCCAGAAACTA
TGATACACTACAAACCCATTACTTTTCTACCGTTGCGTCTCAAAAGGGCG
AAAAGCGAGCAAAGGCCTTGAACTCTTTCAAGGACGACATCTCCAAGCTT
ACGCAGTTCACCCGCTTTCGAGACACTGCCACATTGATGCATGTTGCCCG
CGTCCCAGATGCTCCCTGTCGGGACGTTTTCAAGGCATCCAACATTGTTT
CCTCCATCGAGTTTGACCGCGAATCAGAACTGTTGGCCACTGCGGGAGTC
ACCAAACGCATCAAGATCTTTGAGTTTTCCAACGTCAAGCGCAACCTCTC
GGACGTTCACTATCCCATCCGCGAGATTAGGACGAACGCAAAGTTGAGCT
GGATTTGCTGGAACCCATACATCAGACATCTTCTCGTGTCATCCGATTAC
GAAGGTGTAGTTGCCCTGTGGGATGTGAGCCAAGCAAGGGCGCTTCGTGT
CTACGAAGAGCACGAGAAACGAGTGTGGAGCGTCGACTATTGCCCGACAA
AACCCACCATTTTTGCGTCAGGCTCCGATGACTACCGCGTCAAACTGTGG
TGTACTACGCAGAGGTCGAGCGTCCTCACTATCGATAATTCGCGCGCCAA
CGTATGCTCCGTTAAATTTCACCCTACCGCCCCCGAAAAACTGGCATTTG
GAAGCGCGGATTTCGGCGTCCATTACTACGACCTCCGCATGGTTAAACAG
CCTCTCCACGTATTTAAGTCGCATACGCGTGCTGTCAGTTACGTCAAGTT
CATGTCGCCGACGTCCCTGGTTTCTGCGTCTGTGGATTCGACGGTTAAGC
TCTGGGACTTGGATACGATGACGTTGGAACGCAATTTCACAGGTCATACG
AACGACAGAAACTTCGTGGGACTGAGCGTCACGCCGGACTATATCGCGTG
CGGCTCTGAAGAGGATATGGTCTACTGTTATTACAAAGCAATCCCGCGAC
CGTTCACAGGGTACCGGTTTTCGAGCGTTGATCCGTTGACCGGCAGGGAA
ATTCACGACGATGATGATGAGTCTCAGTTTGTGAGCAGCGTGTGCTGGTG
CCCAAAGGACCCCACAAAGCTTGTAGCCGCTAACAGCCTGGGCACAATCA
AGGTTCTATCCCTTGAATCGGATGATAGTGACGACGACGACGATGATGAA
GAGCAGAAGGGCGATTGA