Gvermi8073.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8073.t1
Unique Name	Gvermi8073.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	192

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:932229..932804 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45351.EDO42412
Preferred name	PPIH
PFAMs	Pro_isomerase
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K09567
KEGG Pathway	ko03040,map03040
KEGG Module	M00354
GOs	GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006457,GO:0006464,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016018,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0022607,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0033218,GO:0034641,GO:0036211,GO:0042277,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045069,GO:0045070,GO:0046483,GO:0046540,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0065003,GO:0065007,GO:0070013,GO:0071001,GO:0071704,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140096,GO:1901360,GO:1901564,GO:1903900,GO:1903902,GO:1990904
Evalue	1.42e-78
EggNOG OGs	COG0652@1\|root,KOG0879@2759\|Eukaryota,38S5T@33154\|Opisthokonta,3BGNF@33208\|Metazoa
EC	5.2.1.8
Description	peptidyl-prolyl cis-trans isomerase activity
COG category	O
BRITE	ko00000,ko00001,ko00002,ko01000,ko03041,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8073	Gvermi8073	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 932229..932804 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8073.t1.stop1	Gvermi8073.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 932229..932231 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8073.t1.CDS1	Gvermi8073.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 932229..932804 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8073.t1.exon1	Gvermi8073.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 932229..932804 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8073.t1.start1	Gvermi8073.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 932802..932804 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8073.t1	Gvermi8073.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 932229..932804 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:932229..932804-
coding sequence from alignment at ScGOVlb_24226:932229..932804-

mRNA sequence

>Gvermi8073.t1 ID=Gvermi8073.t1|Name=Gvermi8073.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=192bp
MISAPVGDPTNALNHHDEQNPIVFFDVSIGDKTIGRMTFELFADVCPRTA
ENFRQFCTGEYRKDNKPVGYKDALFHRVVKGFIVQGGDFVNGDGTGCMSI
YGEKAFQDESMGAFRHSGAGVLAMANSGPNTNGCQFYITCKECPFLDGKH
VVFGKVANEESMLVVRKLENVAVDKGSRPIMRCKIVQCGEL*

spliced messenger RNA

>Gvermi8073.t1 ID=Gvermi8073.t1|Name=Gvermi8073.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=576bp|location=Sequence derived from alignment at ScGOVlb_24226:932229..932804- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATATCAGCTCCCGTTGGAGACCCCACAAATGCCCTCAATCATCACGA
TGAGCAGAATCCGATCGTATTCTTCGATGTAAGCATTGGAGACAAAACAA
TTGGACGCATGACTTTCGAGCTATTCGCAGACGTTTGTCCGAGAACCGCT
GAGAATTTCCGTCAGTTTTGCACCGGTGAGTACAGGAAGGATAACAAGCC
TGTCGGGTATAAAGATGCTCTTTTTCATCGGGTTGTGAAAGGCTTCATAG
TACAAGGTGGCGATTTTGTCAATGGAGACGGCACCGGCTGTATGTCCATT
TACGGAGAAAAGGCATTTCAGGATGAATCGATGGGCGCCTTTCGCCATTC
CGGCGCTGGTGTTCTCGCCATGGCTAACAGCGGTCCCAACACCAACGGTT
GCCAGTTCTACATCACGTGCAAAGAATGTCCATTTCTGGACGGAAAGCAC
GTCGTGTTTGGAAAAGTTGCGAACGAAGAGTCGATGCTTGTGGTCCGAAA
GCTGGAAAACGTTGCCGTTGATAAGGGCAGTCGGCCAATCATGAGATGCA
AGATTGTGCAATGCGGGGAGCTCTGA

protein sequence of Gvermi8073.t1

>Gvermi8073.t1 ID=Gvermi8073.t1|Name=Gvermi8073.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=192bp
MISAPVGDPTNALNHHDEQNPIVFFDVSIGDKTIGRMTFELFADVCPRTA
ENFRQFCTGEYRKDNKPVGYKDALFHRVVKGFIVQGGDFVNGDGTGCMSI
YGEKAFQDESMGAFRHSGAGVLAMANSGPNTNGCQFYITCKECPFLDGKH
VVFGKVANEESMLVVRKLENVAVDKGSRPIMRCKIVQCGEL*

mRNA from alignment at ScGOVlb_24226:932229..932804-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8073.t1 ID=Gvermi8073.t1|Name=Gvermi8073.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=576bp|location=Sequence derived from alignment at ScGOVlb_24226:932229..932804- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATATCAGCTCCCGTTGGAGACCCCACAAATGCCCTCAATCATCACGA
TGAGCAGAATCCGATCGTATTCTTCGATGTAAGCATTGGAGACAAAACAA
TTGGACGCATGACTTTCGAGCTATTCGCAGACGTTTGTCCGAGAACCGCT
GAGAATTTCCGTCAGTTTTGCACCGGTGAGTACAGGAAGGATAACAAGCC
TGTCGGGTATAAAGATGCTCTTTTTCATCGGGTTGTGAAAGGCTTCATAG
TACAAGGTGGCGATTTTGTCAATGGAGACGGCACCGGCTGTATGTCCATT
TACGGAGAAAAGGCATTTCAGGATGAATCGATGGGCGCCTTTCGCCATTC
CGGCGCTGGTGTTCTCGCCATGGCTAACAGCGGTCCCAACACCAACGGTT
GCCAGTTCTACATCACGTGCAAAGAATGTCCATTTCTGGACGGAAAGCAC
GTCGTGTTTGGAAAAGTTGCGAACGAAGAGTCGATGCTTGTGGTCCGAAA
GCTGGAAAACGTTGCCGTTGATAAGGGCAGTCGGCCAATCATGAGATGCA
AGATTGTGCAATGCGGGGAGCTCTGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:932229..932804-

>Gvermi8073.t1 ID=Gvermi8073.t1|Name=Gvermi8073.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=576bp|location=Sequence derived from alignment at ScGOVlb_24226:932229..932804- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATATCAGCTCCCGTTGGAGACCCCACAAATGCCCTCAATCATCACGA
TGAGCAGAATCCGATCGTATTCTTCGATGTAAGCATTGGAGACAAAACAA
TTGGACGCATGACTTTCGAGCTATTCGCAGACGTTTGTCCGAGAACCGCT
GAGAATTTCCGTCAGTTTTGCACCGGTGAGTACAGGAAGGATAACAAGCC
TGTCGGGTATAAAGATGCTCTTTTTCATCGGGTTGTGAAAGGCTTCATAG
TACAAGGTGGCGATTTTGTCAATGGAGACGGCACCGGCTGTATGTCCATT
TACGGAGAAAAGGCATTTCAGGATGAATCGATGGGCGCCTTTCGCCATTC
CGGCGCTGGTGTTCTCGCCATGGCTAACAGCGGTCCCAACACCAACGGTT
GCCAGTTCTACATCACGTGCAAAGAATGTCCATTTCTGGACGGAAAGCAC
GTCGTGTTTGGAAAAGTTGCGAACGAAGAGTCGATGCTTGTGGTCCGAAA
GCTGGAAAACGTTGCCGTTGATAAGGGCAGTCGGCCAATCATGAGATGCA
AGATTGTGCAATGCGGGGAGCTCTGA