Gvermi7941.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7941.t1
Unique NameGvermi7941.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length477
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:235328..236758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ07231
PFAMsGround-like,Hint,Kelch_4
Max annot lvl2759|Eukaryota
KEGG koko:K06224,ko:K11990,ko:K16669
KEGG Pathwayko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG ModuleM00678
GOsGO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue1.21e-17
EggNOG OGsKOG3638@1|root,KOG3638@2759|Eukaryota
Descriptionintein-mediated protein splicing
COG categoryM
BRITEko00000,ko00001,ko00002,ko00536,ko01002,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7941Gvermi7941Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 235328..236758 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7941.t1.start1Gvermi7941.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 235328..235330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7941.t1.CDS1Gvermi7941.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 235328..236758 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7941.t1.exon1Gvermi7941.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 235328..236758 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7941.t1.stop1Gvermi7941.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 236756..236758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7941.t1Gvermi7941.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 235328..236758 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7941.t1 ID=Gvermi7941.t1|Name=Gvermi7941.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=477bp
MVATKSIVCFAVFIAGACAGLTGRNTRQFLPSDITGEYSLFVKQGTCAPT
VEFKSFKTMAPGVYAVPHGEIVEDGSVCSNEGELTIVAKETIIESGNEEV
LNMKPVDTIVKELNKQGATFMLGYEKDGRKCGEVTTPAKSVAVFIDEEKK
ILIPGLITLFPGAKYMIVYDSSSPTPCTYFAQHDDRVIGVAAAPPSPMPT
PTPVLEVVATPTPVAEEPSSSMEAEVVEEGVGSGAVAGAAAGGAAAAGAA
AAGAATTGSSDSDSDGMDGMDGMDGMAGMDDFATQSFEPEPTSEEDDGSV
CFPADATVELEDGTVKTMDVLELGDRVKVAADEFSPVFMFSHKMGGVSYT
FVRLTAASGESVTLTKGHYLYVNGVMAAAESVRVGDSIETESGLVSVSSV
DSVVSRGLYNPQTVNGNIIVNGIKASTYTTAVETKTAHSLLLPLRAAFRF
AGMTTSMFDNGADRIANMLPTGALIL*
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spliced messenger RNA

>Gvermi7941.t1 ID=Gvermi7941.t1|Name=Gvermi7941.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at ScGOVlb_24226:235328..236758+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCTACCAAGTCAATTGTATGCTTCGCCGTGTTCATTGCCGGTGC
TTGCGCTGGTCTCACTGGTCGTAACACCCGTCAGTTCCTTCCCTCAGACA
TCACGGGTGAATACTCTTTGTTTGTTAAGCAGGGAACATGTGCTCCCACC
GTCGAGTTCAAGTCTTTCAAGACTATGGCCCCTGGTGTTTACGCTGTACC
TCACGGTGAAATTGTGGAGGATGGTTCTGTATGTTCCAATGAAGGCGAAT
TAACCATTGTCGCTAAAGAGACTATCATTGAAAGTGGTAATGAGGAAGTT
CTCAACATGAAGCCAGTCGATACTATTGTCAAGGAGCTCAACAAGCAAGG
TGCTACTTTCATGTTGGGTTACGAAAAGGATGGTCGTAAATGCGGGGAAG
TCACCACTCCGGCTAAGTCTGTTGCTGTTTTCATTGACGAAGAGAAAAAG
ATTCTAATTCCGGGCCTTATCACTTTGTTCCCGGGAGCGAAGTACATGAT
TGTCTATGATAGTTCTTCCCCGACTCCCTGTACGTACTTCGCCCAGCATG
ATGACCGGGTAATTGGTGTCGCTGCCGCTCCTCCCAGTCCGATGCCAACT
CCGACTCCGGTTCTGGAAGTTGTTGCAACTCCGACCCCTGTCGCCGAAGA
ACCTTCTTCTTCCATGGAAGCTGAAGTCGTTGAGGAAGGTGTCGGTTCCG
GAGCTGTTGCCGGAgctgccgctggtggagccgctgccgctggtgccgct
gccgcgggtgccgccactaccggctcctctgactctgATTCTgatggcat
ggatggcatggatggcatggatggcatggCCGGGATGGATGATTTCGCCA
CGCAATCGTTCGAACCGGAGCCAACCTCTGAAGAAGATGATGGTTCCGTT
TGCTTCCCGGCTGATGCTACTGTTGAACTTGAAGATGGAACGGTAAAGAC
CATGGACGTCCTTGAACTTGGTGACCGTGTGAAGGTTGCCGCCGATGAGT
TCTCCCCGGTCTTCATGTTCTCCCACAAAATGGGTGGCGTTTCGTACACC
TTTGTTCGCCTTACTGCTGCCTCTGGCGAGTCTGTGACCCTGACCAAGGG
ACACTATCTATACGTCAACGGCGTGATGGCCGCTGCCGAATCCGTTCGTG
TCGGTGACTCCATTGAGACTGAATCTGGTTTGGTTTCCGTTTCTTCCGTT
GACTCCGTTGTTTCCCGTGGCCTCTACAACCCTCAGACTGTCAACGGCAA
CATCATTGTCAATGGCATTAAGGCTTCGACCTATACCACAGCCGTTGAGA
CTAAGACCGCCCATTCTCTTCTTCTGCCGCTTCGTGCTGCGTTCCGTTTC
GCTGGTATGACCACCTCCATGTTCGATAATGGAGCTGACAGGATTGCCAA
CATGCTCCCTACCGGTGCGCTGATATTGTAA
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protein sequence of Gvermi7941.t1

>Gvermi7941.t1 ID=Gvermi7941.t1|Name=Gvermi7941.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=477bp
MVATKSIVCFAVFIAGACAGLTGRNTRQFLPSDITGEYSLFVKQGTCAPT
VEFKSFKTMAPGVYAVPHGEIVEDGSVCSNEGELTIVAKETIIESGNEEV
LNMKPVDTIVKELNKQGATFMLGYEKDGRKCGEVTTPAKSVAVFIDEEKK
ILIPGLITLFPGAKYMIVYDSSSPTPCTYFAQHDDRVIGVAAAPPSPMPT
PTPVLEVVATPTPVAEEPSSSMEAEVVEEGVGSGAVAGAAAGGAAAAGAA
AAGAATTGSSDSDSDGMDGMDGMDGMAGMDDFATQSFEPEPTSEEDDGSV
CFPADATVELEDGTVKTMDVLELGDRVKVAADEFSPVFMFSHKMGGVSYT
FVRLTAASGESVTLTKGHYLYVNGVMAAAESVRVGDSIETESGLVSVSSV
DSVVSRGLYNPQTVNGNIIVNGIKASTYTTAVETKTAHSLLLPLRAAFRF
AGMTTSMFDNGADRIANMLPTGALIL*
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mRNA from alignment at ScGOVlb_24226:235328..236758+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7941.t1 ID=Gvermi7941.t1|Name=Gvermi7941.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at ScGOVlb_24226:235328..236758+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGCTACCAAGTCAATTGTATGCTTCGCCGTGTTCATTGCCGGTGC
TTGCGCTGGTCTCACTGGTCGTAACACCCGTCAGTTCCTTCCCTCAGACA
TCACGGGTGAATACTCTTTGTTTGTTAAGCAGGGAACATGTGCTCCCACC
GTCGAGTTCAAGTCTTTCAAGACTATGGCCCCTGGTGTTTACGCTGTACC
TCACGGTGAAATTGTGGAGGATGGTTCTGTATGTTCCAATGAAGGCGAAT
TAACCATTGTCGCTAAAGAGACTATCATTGAAAGTGGTAATGAGGAAGTT
CTCAACATGAAGCCAGTCGATACTATTGTCAAGGAGCTCAACAAGCAAGG
TGCTACTTTCATGTTGGGTTACGAAAAGGATGGTCGTAAATGCGGGGAAG
TCACCACTCCGGCTAAGTCTGTTGCTGTTTTCATTGACGAAGAGAAAAAG
ATTCTAATTCCGGGCCTTATCACTTTGTTCCCGGGAGCGAAGTACATGAT
TGTCTATGATAGTTCTTCCCCGACTCCCTGTACGTACTTCGCCCAGCATG
ATGACCGGGTAATTGGTGTCGCTGCCGCTCCTCCCAGTCCGATGCCAACT
CCGACTCCGGTTCTGGAAGTTGTTGCAACTCCGACCCCTGTCGCCGAAGA
ACCTTCTTCTTCCATGGAAGCTGAAGTCGTTGAGGAAGGTGTCGGTTCCG
GAGCTGTTGCCGGAgctgccgctggtggagccgctgccgctggtgccgct
gccgcgggtgccgccactaccggctcctctgactctgATTCTgatggcat
ggatggcatggatggcatggatggcatggCCGGGATGGATGATTTCGCCA
CGCAATCGTTCGAACCGGAGCCAACCTCTGAAGAAGATGATGGTTCCGTT
TGCTTCCCGGCTGATGCTACTGTTGAACTTGAAGATGGAACGGTAAAGAC
CATGGACGTCCTTGAACTTGGTGACCGTGTGAAGGTTGCCGCCGATGAGT
TCTCCCCGGTCTTCATGTTCTCCCACAAAATGGGTGGCGTTTCGTACACC
TTTGTTCGCCTTACTGCTGCCTCTGGCGAGTCTGTGACCCTGACCAAGGG
ACACTATCTATACGTCAACGGCGTGATGGCCGCTGCCGAATCCGTTCGTG
TCGGTGACTCCATTGAGACTGAATCTGGTTTGGTTTCCGTTTCTTCCGTT
GACTCCGTTGTTTCCCGTGGCCTCTACAACCCTCAGACTGTCAACGGCAA
CATCATTGTCAATGGCATTAAGGCTTCGACCTATACCACAGCCGTTGAGA
CTAAGACCGCCCATTCTCTTCTTCTGCCGCTTCGTGCTGCGTTCCGTTTC
GCTGGTATGACCACCTCCATGTTCGATAATGGAGCTGACAGGATTGCCAA
CATGCTCCCTACCGGTGCGCTGATATTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:235328..236758+

>Gvermi7941.t1 ID=Gvermi7941.t1|Name=Gvermi7941.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1431bp|location=Sequence derived from alignment at ScGOVlb_24226:235328..236758+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGCTACCAAGTCAATTGTATGCTTCGCCGTGTTCATTGCCGGTGC
TTGCGCTGGTCTCACTGGTCGTAACACCCGTCAGTTCCTTCCCTCAGACA
TCACGGGTGAATACTCTTTGTTTGTTAAGCAGGGAACATGTGCTCCCACC
GTCGAGTTCAAGTCTTTCAAGACTATGGCCCCTGGTGTTTACGCTGTACC
TCACGGTGAAATTGTGGAGGATGGTTCTGTATGTTCCAATGAAGGCGAAT
TAACCATTGTCGCTAAAGAGACTATCATTGAAAGTGGTAATGAGGAAGTT
CTCAACATGAAGCCAGTCGATACTATTGTCAAGGAGCTCAACAAGCAAGG
TGCTACTTTCATGTTGGGTTACGAAAAGGATGGTCGTAAATGCGGGGAAG
TCACCACTCCGGCTAAGTCTGTTGCTGTTTTCATTGACGAAGAGAAAAAG
ATTCTAATTCCGGGCCTTATCACTTTGTTCCCGGGAGCGAAGTACATGAT
TGTCTATGATAGTTCTTCCCCGACTCCCTGTACGTACTTCGCCCAGCATG
ATGACCGGGTAATTGGTGTCGCTGCCGCTCCTCCCAGTCCGATGCCAACT
CCGACTCCGGTTCTGGAAGTTGTTGCAACTCCGACCCCTGTCGCCGAAGA
ACCTTCTTCTTCCATGGAAGCTGAAGTCGTTGAGGAAGGTGTCGGTTCCG
GAGCTGTTGCCGGAgctgccgctggtggagccgctgccgctggtgccgct
gccgcgggtgccgccactaccggctcctctgactctgATTCTgatggcat
ggatggcatggatggcatggatggcatggCCGGGATGGATGATTTCGCCA
CGCAATCGTTCGAACCGGAGCCAACCTCTGAAGAAGATGATGGTTCCGTT
TGCTTCCCGGCTGATGCTACTGTTGAACTTGAAGATGGAACGGTAAAGAC
CATGGACGTCCTTGAACTTGGTGACCGTGTGAAGGTTGCCGCCGATGAGT
TCTCCCCGGTCTTCATGTTCTCCCACAAAATGGGTGGCGTTTCGTACACC
TTTGTTCGCCTTACTGCTGCCTCTGGCGAGTCTGTGACCCTGACCAAGGG
ACACTATCTATACGTCAACGGCGTGATGGCCGCTGCCGAATCCGTTCGTG
TCGGTGACTCCATTGAGACTGAATCTGGTTTGGTTTCCGTTTCTTCCGTT
GACTCCGTTGTTTCCCGTGGCCTCTACAACCCTCAGACTGTCAACGGCAA
CATCATTGTCAATGGCATTAAGGCTTCGACCTATACCACAGCCGTTGAGA
CTAAGACCGCCCATTCTCTTCTTCTGCCGCTTCGTGCTGCGTTCCGTTTC
GCTGGTATGACCACCTCCATGTTCGATAATGGAGCTGACAGGATTGCCAA
CATGCTCCCTACCGGTGCGCTGATATTGTAA
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