Gvermi8019.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8019.t1
Unique NameGvermi8019.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:673135..674322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705122.1
PFAMsRETICULATA-like
Max annot lvl2759|Eukaryota
Evalue1.51e-93
EggNOG OGs28IK9@1|root,2QQX6@2759|Eukaryota
DescriptionProtein RETICULATA-related
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8019Gvermi8019Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 673135..674322 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8019.t1.start1Gvermi8019.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 673135..673137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8019.t1.CDS1Gvermi8019.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 673135..674322 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8019.t1.exon1Gvermi8019.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 673135..674322 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8019.t1.stop1Gvermi8019.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 674320..674322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8019.t1Gvermi8019.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 673135..674322 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8019.t1 ID=Gvermi8019.t1|Name=Gvermi8019.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=396bp
MEKHTAFVARFPFSAARPASNPSPVSCTRYAPRIARSAPRAHTLCALTPI
ESGAADFDFLPIATVAIYDFHAEDDSTAQPAYEGGSVPPSGSSSGSGSGG
SDDDSPSAPDAKLTSLLRDSNAALADVPADILSAYREGLIPLSAISNFFS
ARANILSRALMGAGSGMRNRFLADKLFLLKILIEEGIGIFGKLSAEYEQR
RHNFWNEKEFVFANLVTALLADFALVYLPAPSVSLTKASTGKGLSSWISN
LSKTLPSNIFQTDRPFTLAQRAAGFTLKASQLFVVGMACCFTGVILTNSL
IFIREKLDKTYVSKTQKQNPVLVSVLYAVFLGASSGTRYQLVNGVENHIF
PRIFRSAPQVVEEASTFLLRYGNTFWGSQQWVMFCRFTNVQKVKE*
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spliced messenger RNA

>Gvermi8019.t1 ID=Gvermi8019.t1|Name=Gvermi8019.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at ScGOVlb_24226:673135..674322+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAGCACACAGCTTTCGTCGCGCGCTTCCCGTTCTCTGCCGCGCG
ACCGGCGTCCAACCCCAGCCCAGTCTCATGTACCAGATATGCCCCTCGCA
TCGCGCGATCGGCACCCCGTGCTCATACGCTGTGTGCTCTGACCCCAATT
GAGTCTGGTGCCGCAGACTTCGACTTCTTGCCCATTGCCACCGTCGCCAT
TTACGACTTCCATGCAGAAGACGACTCTACTGCACAGCCGGCATACGAAG
GAGGCTCTGTTCCTCCGTCCGGTTCGTCATCGGGCTCTGGATCAGGCGGT
TCAGACGATGACTCGCCGTCCGCCCCCGACGCAAAACTCACCTCCCTGCT
ACGCGACTCTAACGCAGCGCTAGCCGATGTTCCCGCTGATATTCTCAGCG
CTTATCGTGAAGGACTGATCCCTCTCTCCGCCATCTCCAACTTCTTTTCT
GCGCGCGCTAACATTCTGTCTCGAGCTTTGATGGGTGCAGGATCCGGCAT
GCGCAACAGGTTCTTGGCAGACAAACTGTTCCTGCTCAAGATACTCATCG
AGGAAGGTATCGGTATTTTTGGCAAGCTTTCCGCCGAATATGAGCAGCGC
CGCCACAATTTTTGGAACGAGAAGGAATTTGTGTTCGCGAACTTGGTCAC
AGCGCTGCTGGCCGATTTCGCGCTGGTTTACCTCCCAGCGCCGTCTGTGT
CGCTCACCAAGGCCTCAACCGGAAAGGGCCTTTCGTCCTGGATAAGCAAT
CTATCAAAAACATTACCAAGTAACATCTTTCAGACCGACCGACCGTTCAC
GCTGGCGCAACGAGCGGCCGGCTTCACTCTAAAGGCCAGTCAACTTTTTG
TTGTGGGCATGGCTTGCTGCTTCACTGGGGTCATCCTCACCAACTCTCTC
ATCTTTATTCGAGAGAAACTCGATAAGACGTACGTGTCAAAGACGCAAAA
GCAAAACCCTGTGCTTGTGTCCGTGCTCTATGCAGTGTTCCTCGGAGCCT
CATCTGGGACAAGGTACCAACTTGTGAATGGCGTGGAGAACCACATTTTC
CCGCGCATCTTTCGCAGTGCTCCGCAAGTCGTAGAGGAAGCCTCAACCTT
CCTTTTACGCTACGGAAACACTTTCTGGGGATCTCAACAGTGGGTCATGT
TTTGTCGTTTCACAAACGTCCAAAAGGTCAAGGAGTAA
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protein sequence of Gvermi8019.t1

>Gvermi8019.t1 ID=Gvermi8019.t1|Name=Gvermi8019.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=396bp
MEKHTAFVARFPFSAARPASNPSPVSCTRYAPRIARSAPRAHTLCALTPI
ESGAADFDFLPIATVAIYDFHAEDDSTAQPAYEGGSVPPSGSSSGSGSGG
SDDDSPSAPDAKLTSLLRDSNAALADVPADILSAYREGLIPLSAISNFFS
ARANILSRALMGAGSGMRNRFLADKLFLLKILIEEGIGIFGKLSAEYEQR
RHNFWNEKEFVFANLVTALLADFALVYLPAPSVSLTKASTGKGLSSWISN
LSKTLPSNIFQTDRPFTLAQRAAGFTLKASQLFVVGMACCFTGVILTNSL
IFIREKLDKTYVSKTQKQNPVLVSVLYAVFLGASSGTRYQLVNGVENHIF
PRIFRSAPQVVEEASTFLLRYGNTFWGSQQWVMFCRFTNVQKVKE*
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mRNA from alignment at ScGOVlb_24226:673135..674322+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8019.t1 ID=Gvermi8019.t1|Name=Gvermi8019.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at ScGOVlb_24226:673135..674322+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGAAGCACACAGCTTTCGTCGCGCGCTTCCCGTTCTCTGCCGCGCG
ACCGGCGTCCAACCCCAGCCCAGTCTCATGTACCAGATATGCCCCTCGCA
TCGCGCGATCGGCACCCCGTGCTCATACGCTGTGTGCTCTGACCCCAATT
GAGTCTGGTGCCGCAGACTTCGACTTCTTGCCCATTGCCACCGTCGCCAT
TTACGACTTCCATGCAGAAGACGACTCTACTGCACAGCCGGCATACGAAG
GAGGCTCTGTTCCTCCGTCCGGTTCGTCATCGGGCTCTGGATCAGGCGGT
TCAGACGATGACTCGCCGTCCGCCCCCGACGCAAAACTCACCTCCCTGCT
ACGCGACTCTAACGCAGCGCTAGCCGATGTTCCCGCTGATATTCTCAGCG
CTTATCGTGAAGGACTGATCCCTCTCTCCGCCATCTCCAACTTCTTTTCT
GCGCGCGCTAACATTCTGTCTCGAGCTTTGATGGGTGCAGGATCCGGCAT
GCGCAACAGGTTCTTGGCAGACAAACTGTTCCTGCTCAAGATACTCATCG
AGGAAGGTATCGGTATTTTTGGCAAGCTTTCCGCCGAATATGAGCAGCGC
CGCCACAATTTTTGGAACGAGAAGGAATTTGTGTTCGCGAACTTGGTCAC
AGCGCTGCTGGCCGATTTCGCGCTGGTTTACCTCCCAGCGCCGTCTGTGT
CGCTCACCAAGGCCTCAACCGGAAAGGGCCTTTCGTCCTGGATAAGCAAT
CTATCAAAAACATTACCAAGTAACATCTTTCAGACCGACCGACCGTTCAC
GCTGGCGCAACGAGCGGCCGGCTTCACTCTAAAGGCCAGTCAACTTTTTG
TTGTGGGCATGGCTTGCTGCTTCACTGGGGTCATCCTCACCAACTCTCTC
ATCTTTATTCGAGAGAAACTCGATAAGACGTACGTGTCAAAGACGCAAAA
GCAAAACCCTGTGCTTGTGTCCGTGCTCTATGCAGTGTTCCTCGGAGCCT
CATCTGGGACAAGGTACCAACTTGTGAATGGCGTGGAGAACCACATTTTC
CCGCGCATCTTTCGCAGTGCTCCGCAAGTCGTAGAGGAAGCCTCAACCTT
CCTTTTACGCTACGGAAACACTTTCTGGGGATCTCAACAGTGGGTCATGT
TTTGTCGTTTCACAAACGTCCAAAAGGTCAAGGAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:673135..674322+

>Gvermi8019.t1 ID=Gvermi8019.t1|Name=Gvermi8019.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1188bp|location=Sequence derived from alignment at ScGOVlb_24226:673135..674322+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGAAGCACACAGCTTTCGTCGCGCGCTTCCCGTTCTCTGCCGCGCG
ACCGGCGTCCAACCCCAGCCCAGTCTCATGTACCAGATATGCCCCTCGCA
TCGCGCGATCGGCACCCCGTGCTCATACGCTGTGTGCTCTGACCCCAATT
GAGTCTGGTGCCGCAGACTTCGACTTCTTGCCCATTGCCACCGTCGCCAT
TTACGACTTCCATGCAGAAGACGACTCTACTGCACAGCCGGCATACGAAG
GAGGCTCTGTTCCTCCGTCCGGTTCGTCATCGGGCTCTGGATCAGGCGGT
TCAGACGATGACTCGCCGTCCGCCCCCGACGCAAAACTCACCTCCCTGCT
ACGCGACTCTAACGCAGCGCTAGCCGATGTTCCCGCTGATATTCTCAGCG
CTTATCGTGAAGGACTGATCCCTCTCTCCGCCATCTCCAACTTCTTTTCT
GCGCGCGCTAACATTCTGTCTCGAGCTTTGATGGGTGCAGGATCCGGCAT
GCGCAACAGGTTCTTGGCAGACAAACTGTTCCTGCTCAAGATACTCATCG
AGGAAGGTATCGGTATTTTTGGCAAGCTTTCCGCCGAATATGAGCAGCGC
CGCCACAATTTTTGGAACGAGAAGGAATTTGTGTTCGCGAACTTGGTCAC
AGCGCTGCTGGCCGATTTCGCGCTGGTTTACCTCCCAGCGCCGTCTGTGT
CGCTCACCAAGGCCTCAACCGGAAAGGGCCTTTCGTCCTGGATAAGCAAT
CTATCAAAAACATTACCAAGTAACATCTTTCAGACCGACCGACCGTTCAC
GCTGGCGCAACGAGCGGCCGGCTTCACTCTAAAGGCCAGTCAACTTTTTG
TTGTGGGCATGGCTTGCTGCTTCACTGGGGTCATCCTCACCAACTCTCTC
ATCTTTATTCGAGAGAAACTCGATAAGACGTACGTGTCAAAGACGCAAAA
GCAAAACCCTGTGCTTGTGTCCGTGCTCTATGCAGTGTTCCTCGGAGCCT
CATCTGGGACAAGGTACCAACTTGTGAATGGCGTGGAGAACCACATTTTC
CCGCGCATCTTTCGCAGTGCTCCGCAAGTCGTAGAGGAAGCCTCAACCTT
CCTTTTACGCTACGGAAACACTTTCTGGGGATCTCAACAGTGGGTCATGT
TTTGTCGTTTCACAAACGTCCAAAAGGTCAAGGAGTAA
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