Gvermi8019.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8019.t1
Unique Name	Gvermi8019.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	396

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:673135..674322 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705122.1
PFAMs	RETICULATA-like
Max annot lvl	2759\|Eukaryota
Evalue	1.51e-93
EggNOG OGs	28IK9@1\|root,2QQX6@2759\|Eukaryota
Description	Protein RETICULATA-related
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8019	Gvermi8019	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 673135..674322 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8019.t1.start1	Gvermi8019.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 673135..673137 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8019.t1.CDS1	Gvermi8019.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 673135..674322 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8019.t1.exon1	Gvermi8019.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 673135..674322 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8019.t1.stop1	Gvermi8019.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 674320..674322 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8019.t1	Gvermi8019.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 673135..674322 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:673135..674322+
coding sequence from alignment at ScGOVlb_24226:673135..674322+

mRNA sequence

>Gvermi8019.t1 ID=Gvermi8019.t1|Name=Gvermi8019.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=396bp
MEKHTAFVARFPFSAARPASNPSPVSCTRYAPRIARSAPRAHTLCALTPI
ESGAADFDFLPIATVAIYDFHAEDDSTAQPAYEGGSVPPSGSSSGSGSGG
SDDDSPSAPDAKLTSLLRDSNAALADVPADILSAYREGLIPLSAISNFFS
ARANILSRALMGAGSGMRNRFLADKLFLLKILIEEGIGIFGKLSAEYEQR
RHNFWNEKEFVFANLVTALLADFALVYLPAPSVSLTKASTGKGLSSWISN
LSKTLPSNIFQTDRPFTLAQRAAGFTLKASQLFVVGMACCFTGVILTNSL
IFIREKLDKTYVSKTQKQNPVLVSVLYAVFLGASSGTRYQLVNGVENHIF
PRIFRSAPQVVEEASTFLLRYGNTFWGSQQWVMFCRFTNVQKVKE*

spliced messenger RNA

>Gvermi8019.t1 ID=Gvermi8019.t1|Name=Gvermi8019.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at ScGOVlb_24226:673135..674322+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAGCACACAGCTTTCGTCGCGCGCTTCCCGTTCTCTGCCGCGCG
ACCGGCGTCCAACCCCAGCCCAGTCTCATGTACCAGATATGCCCCTCGCA
TCGCGCGATCGGCACCCCGTGCTCATACGCTGTGTGCTCTGACCCCAATT
GAGTCTGGTGCCGCAGACTTCGACTTCTTGCCCATTGCCACCGTCGCCAT
TTACGACTTCCATGCAGAAGACGACTCTACTGCACAGCCGGCATACGAAG
GAGGCTCTGTTCCTCCGTCCGGTTCGTCATCGGGCTCTGGATCAGGCGGT
TCAGACGATGACTCGCCGTCCGCCCCCGACGCAAAACTCACCTCCCTGCT
ACGCGACTCTAACGCAGCGCTAGCCGATGTTCCCGCTGATATTCTCAGCG
CTTATCGTGAAGGACTGATCCCTCTCTCCGCCATCTCCAACTTCTTTTCT
GCGCGCGCTAACATTCTGTCTCGAGCTTTGATGGGTGCAGGATCCGGCAT
GCGCAACAGGTTCTTGGCAGACAAACTGTTCCTGCTCAAGATACTCATCG
AGGAAGGTATCGGTATTTTTGGCAAGCTTTCCGCCGAATATGAGCAGCGC
CGCCACAATTTTTGGAACGAGAAGGAATTTGTGTTCGCGAACTTGGTCAC
AGCGCTGCTGGCCGATTTCGCGCTGGTTTACCTCCCAGCGCCGTCTGTGT
CGCTCACCAAGGCCTCAACCGGAAAGGGCCTTTCGTCCTGGATAAGCAAT
CTATCAAAAACATTACCAAGTAACATCTTTCAGACCGACCGACCGTTCAC
GCTGGCGCAACGAGCGGCCGGCTTCACTCTAAAGGCCAGTCAACTTTTTG
TTGTGGGCATGGCTTGCTGCTTCACTGGGGTCATCCTCACCAACTCTCTC
ATCTTTATTCGAGAGAAACTCGATAAGACGTACGTGTCAAAGACGCAAAA
GCAAAACCCTGTGCTTGTGTCCGTGCTCTATGCAGTGTTCCTCGGAGCCT
CATCTGGGACAAGGTACCAACTTGTGAATGGCGTGGAGAACCACATTTTC
CCGCGCATCTTTCGCAGTGCTCCGCAAGTCGTAGAGGAAGCCTCAACCTT
CCTTTTACGCTACGGAAACACTTTCTGGGGATCTCAACAGTGGGTCATGT
TTTGTCGTTTCACAAACGTCCAAAAGGTCAAGGAGTAA

protein sequence of Gvermi8019.t1

>Gvermi8019.t1 ID=Gvermi8019.t1|Name=Gvermi8019.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=396bp
MEKHTAFVARFPFSAARPASNPSPVSCTRYAPRIARSAPRAHTLCALTPI
ESGAADFDFLPIATVAIYDFHAEDDSTAQPAYEGGSVPPSGSSSGSGSGG
SDDDSPSAPDAKLTSLLRDSNAALADVPADILSAYREGLIPLSAISNFFS
ARANILSRALMGAGSGMRNRFLADKLFLLKILIEEGIGIFGKLSAEYEQR
RHNFWNEKEFVFANLVTALLADFALVYLPAPSVSLTKASTGKGLSSWISN
LSKTLPSNIFQTDRPFTLAQRAAGFTLKASQLFVVGMACCFTGVILTNSL
IFIREKLDKTYVSKTQKQNPVLVSVLYAVFLGASSGTRYQLVNGVENHIF
PRIFRSAPQVVEEASTFLLRYGNTFWGSQQWVMFCRFTNVQKVKE*

mRNA from alignment at ScGOVlb_24226:673135..674322+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8019.t1 ID=Gvermi8019.t1|Name=Gvermi8019.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at ScGOVlb_24226:673135..674322+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGAAGCACACAGCTTTCGTCGCGCGCTTCCCGTTCTCTGCCGCGCG
ACCGGCGTCCAACCCCAGCCCAGTCTCATGTACCAGATATGCCCCTCGCA
TCGCGCGATCGGCACCCCGTGCTCATACGCTGTGTGCTCTGACCCCAATT
GAGTCTGGTGCCGCAGACTTCGACTTCTTGCCCATTGCCACCGTCGCCAT
TTACGACTTCCATGCAGAAGACGACTCTACTGCACAGCCGGCATACGAAG
GAGGCTCTGTTCCTCCGTCCGGTTCGTCATCGGGCTCTGGATCAGGCGGT
TCAGACGATGACTCGCCGTCCGCCCCCGACGCAAAACTCACCTCCCTGCT
ACGCGACTCTAACGCAGCGCTAGCCGATGTTCCCGCTGATATTCTCAGCG
CTTATCGTGAAGGACTGATCCCTCTCTCCGCCATCTCCAACTTCTTTTCT
GCGCGCGCTAACATTCTGTCTCGAGCTTTGATGGGTGCAGGATCCGGCAT
GCGCAACAGGTTCTTGGCAGACAAACTGTTCCTGCTCAAGATACTCATCG
AGGAAGGTATCGGTATTTTTGGCAAGCTTTCCGCCGAATATGAGCAGCGC
CGCCACAATTTTTGGAACGAGAAGGAATTTGTGTTCGCGAACTTGGTCAC
AGCGCTGCTGGCCGATTTCGCGCTGGTTTACCTCCCAGCGCCGTCTGTGT
CGCTCACCAAGGCCTCAACCGGAAAGGGCCTTTCGTCCTGGATAAGCAAT
CTATCAAAAACATTACCAAGTAACATCTTTCAGACCGACCGACCGTTCAC
GCTGGCGCAACGAGCGGCCGGCTTCACTCTAAAGGCCAGTCAACTTTTTG
TTGTGGGCATGGCTTGCTGCTTCACTGGGGTCATCCTCACCAACTCTCTC
ATCTTTATTCGAGAGAAACTCGATAAGACGTACGTGTCAAAGACGCAAAA
GCAAAACCCTGTGCTTGTGTCCGTGCTCTATGCAGTGTTCCTCGGAGCCT
CATCTGGGACAAGGTACCAACTTGTGAATGGCGTGGAGAACCACATTTTC
CCGCGCATCTTTCGCAGTGCTCCGCAAGTCGTAGAGGAAGCCTCAACCTT
CCTTTTACGCTACGGAAACACTTTCTGGGGATCTCAACAGTGGGTCATGT
TTTGTCGTTTCACAAACGTCCAAAAGGTCAAGGAGTAA

Coding sequence (CDS) from alignment at ScGOVlb_24226:673135..674322+

>Gvermi8019.t1 ID=Gvermi8019.t1|Name=Gvermi8019.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1188bp|location=Sequence derived from alignment at ScGOVlb_24226:673135..674322+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGAAGCACACAGCTTTCGTCGCGCGCTTCCCGTTCTCTGCCGCGCG
ACCGGCGTCCAACCCCAGCCCAGTCTCATGTACCAGATATGCCCCTCGCA
TCGCGCGATCGGCACCCCGTGCTCATACGCTGTGTGCTCTGACCCCAATT
GAGTCTGGTGCCGCAGACTTCGACTTCTTGCCCATTGCCACCGTCGCCAT
TTACGACTTCCATGCAGAAGACGACTCTACTGCACAGCCGGCATACGAAG
GAGGCTCTGTTCCTCCGTCCGGTTCGTCATCGGGCTCTGGATCAGGCGGT
TCAGACGATGACTCGCCGTCCGCCCCCGACGCAAAACTCACCTCCCTGCT
ACGCGACTCTAACGCAGCGCTAGCCGATGTTCCCGCTGATATTCTCAGCG
CTTATCGTGAAGGACTGATCCCTCTCTCCGCCATCTCCAACTTCTTTTCT
GCGCGCGCTAACATTCTGTCTCGAGCTTTGATGGGTGCAGGATCCGGCAT
GCGCAACAGGTTCTTGGCAGACAAACTGTTCCTGCTCAAGATACTCATCG
AGGAAGGTATCGGTATTTTTGGCAAGCTTTCCGCCGAATATGAGCAGCGC
CGCCACAATTTTTGGAACGAGAAGGAATTTGTGTTCGCGAACTTGGTCAC
AGCGCTGCTGGCCGATTTCGCGCTGGTTTACCTCCCAGCGCCGTCTGTGT
CGCTCACCAAGGCCTCAACCGGAAAGGGCCTTTCGTCCTGGATAAGCAAT
CTATCAAAAACATTACCAAGTAACATCTTTCAGACCGACCGACCGTTCAC
GCTGGCGCAACGAGCGGCCGGCTTCACTCTAAAGGCCAGTCAACTTTTTG
TTGTGGGCATGGCTTGCTGCTTCACTGGGGTCATCCTCACCAACTCTCTC
ATCTTTATTCGAGAGAAACTCGATAAGACGTACGTGTCAAAGACGCAAAA
GCAAAACCCTGTGCTTGTGTCCGTGCTCTATGCAGTGTTCCTCGGAGCCT
CATCTGGGACAAGGTACCAACTTGTGAATGGCGTGGAGAACCACATTTTC
CCGCGCATCTTTCGCAGTGCTCCGCAAGTCGTAGAGGAAGCCTCAACCTT
CCTTTTACGCTACGGAAACACTTTCTGGGGATCTCAACAGTGGGTCATGT
TTTGTCGTTTCACAAACGTCCAAAAGGTCAAGGAGTAA