Gvermi8037.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8037.t1
Unique NameGvermi8037.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:776060..777094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004344376.1
Preferred nameBDP1
PFAMsMyb_DNA-bind_7
Max annot lvl33154|Opisthokonta
KEGG rclassRC00002,RC00078
KEGG koko:K00858,ko:K15198
KEGG ReactionR00104
KEGG Pathwayko00760,ko01100,map00760,map01100
GOsGO:0000126,GO:0000976,GO:0000992,GO:0001006,GO:0001016,GO:0001025,GO:0001032,GO:0001067,GO:0001112,GO:0001120,GO:0001156,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010528,GO:0010530,GO:0010556,GO:0010604,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051252,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070894,GO:0070896,GO:0070897,GO:0070898,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090576,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903506,GO:1990837,GO:2000112,GO:2001141
Evalue5.54e-17
EggNOG OGsCOG5118@1|root,KOG2009@2759|Eukaryota,38I0C@33154|Opisthokonta
EC2.7.1.23
DescriptionB double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
COG categoryK
BRITEko00000,ko00001,ko01000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8037Gvermi8037Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 776060..777094 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8037.t1.stop1Gvermi8037.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 776060..776062 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8037.t1.CDS1Gvermi8037.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 776060..777094 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8037.t1.exon1Gvermi8037.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 776060..777094 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8037.t1.start1Gvermi8037.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 777092..777094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8037.t1Gvermi8037.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 776060..777094 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8037.t1 ID=Gvermi8037.t1|Name=Gvermi8037.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=345bp
MSEPPYSDEDDDDATTTVRHADAVGLANNGQITINEVIRNIRKRKNRKQM
PSTARRNEQRRQRRRTGAPQPQPLEAGHQVPQAEPASPPPPEEEEPDTAV
VAPQLTLDENGNIVVDSSSLVVSAGTVINAETEGGDVTTFENYEYTKHIT
SATFSKRQNSTKWLAEETDRFYECLRKYGTDFLLMESDFPTRSRRQLKLK
FKREERENPCRIDNALRATPLPLPTSLPKRPAAPDDQQTENTSREEQDTP
PDAAGDTPPAPDLTATAPASHSQKIADVQAAQAQANDASDTEVKDDENSD
NEATREAVIKVVGTADDDPDMQDVDMNAMPLITAESDDSWGDSD*
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spliced messenger RNA

>Gvermi8037.t1 ID=Gvermi8037.t1|Name=Gvermi8037.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at ScGOVlb_24226:776060..777094- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGAGCCTCCGTATTCAGACGAGGACGATGACGATGCGACAACAAC
TGTGCGCCATGCAGACGCTGTCGGCTTGGCAAACAACGGCCAAATAACCA
TTAATGAGGTGATTCGTAACATCAGAAAGCGCAAGAATCGCAAACAAATG
CCCTCCACGGCCCGTAGGAATGAGCAGCGTCGTCAGCGTCGCCGAACCGG
TGCTCCGCAACCGCAACCTTTGGAAGCGGGCCATCAAGTCCCGCAAGCTG
AACCTGCGTCCCCACCGCCCCCGGAAGAGGAGGAGCCGGACACAGCTGTC
GTTGCGCCGCAGCTCACCCTGGACGAGAACGGGAACATTGTTGTAGACAG
CTCTTCTTTGGTTGTCAGTGCCGGCACCGTCATCAACGCGGAGACTGAAG
GCGGGGATGTCACGACGTTTGAGAACTACGAGTACACAAAGCACATTACA
TCGGCAACGTTTTCGAAACGGCAGAATTCTACCAAATGGCTTGCGGAAGA
AACGGATCGCTTCTACGAGTGCTTGCGCAAGTACGGAACTGACTTTCTGC
TGATGGAGTCTGATTTTCCAACACGAAGTCGCCGCCAATTGAAACTGAAG
TTCAAGCGTGAGGAGAGGGAAAATCCGTGTCGAATCGACAATGCATTGCG
CGCCACTCCCCTTCCTTTACCTACTTCCCTGCCTAAACGCCCCGCTGCGC
CAGACGACCAACAGACCGAGAACACCTCGCGCGAGGAACAAGACACTCCC
CCAGACGCCGCGGGTGATACGCCACCCGCACCAGACCTGACAGCAACTGC
TCCAGCATCCCATTCACAGAAAATAGCCGACGTGCAAGCTGCTCAAGCTC
AAGCAAATGACGCGTCTGACACAGAAGTGAAGGATGATGAAAACAGCGAT
AACGAGGCCACTCGCGAAGCGGTGATCAAAGTAGTGGGCACTGCCGATGA
CGACCCTGACATGCAAGATGTGGACATGAATGCGATGCCGCTCATCACGG
CAGAGTCTGATGATTCTTGGGGAGACTCCGATTAA
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protein sequence of Gvermi8037.t1

>Gvermi8037.t1 ID=Gvermi8037.t1|Name=Gvermi8037.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=345bp
MSEPPYSDEDDDDATTTVRHADAVGLANNGQITINEVIRNIRKRKNRKQM
PSTARRNEQRRQRRRTGAPQPQPLEAGHQVPQAEPASPPPPEEEEPDTAV
VAPQLTLDENGNIVVDSSSLVVSAGTVINAETEGGDVTTFENYEYTKHIT
SATFSKRQNSTKWLAEETDRFYECLRKYGTDFLLMESDFPTRSRRQLKLK
FKREERENPCRIDNALRATPLPLPTSLPKRPAAPDDQQTENTSREEQDTP
PDAAGDTPPAPDLTATAPASHSQKIADVQAAQAQANDASDTEVKDDENSD
NEATREAVIKVVGTADDDPDMQDVDMNAMPLITAESDDSWGDSD*
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mRNA from alignment at ScGOVlb_24226:776060..777094-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8037.t1 ID=Gvermi8037.t1|Name=Gvermi8037.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at ScGOVlb_24226:776060..777094- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTGAGCCTCCGTATTCAGACGAGGACGATGACGATGCGACAACAAC
TGTGCGCCATGCAGACGCTGTCGGCTTGGCAAACAACGGCCAAATAACCA
TTAATGAGGTGATTCGTAACATCAGAAAGCGCAAGAATCGCAAACAAATG
CCCTCCACGGCCCGTAGGAATGAGCAGCGTCGTCAGCGTCGCCGAACCGG
TGCTCCGCAACCGCAACCTTTGGAAGCGGGCCATCAAGTCCCGCAAGCTG
AACCTGCGTCCCCACCGCCCCCGGAAGAGGAGGAGCCGGACACAGCTGTC
GTTGCGCCGCAGCTCACCCTGGACGAGAACGGGAACATTGTTGTAGACAG
CTCTTCTTTGGTTGTCAGTGCCGGCACCGTCATCAACGCGGAGACTGAAG
GCGGGGATGTCACGACGTTTGAGAACTACGAGTACACAAAGCACATTACA
TCGGCAACGTTTTCGAAACGGCAGAATTCTACCAAATGGCTTGCGGAAGA
AACGGATCGCTTCTACGAGTGCTTGCGCAAGTACGGAACTGACTTTCTGC
TGATGGAGTCTGATTTTCCAACACGAAGTCGCCGCCAATTGAAACTGAAG
TTCAAGCGTGAGGAGAGGGAAAATCCGTGTCGAATCGACAATGCATTGCG
CGCCACTCCCCTTCCTTTACCTACTTCCCTGCCTAAACGCCCCGCTGCGC
CAGACGACCAACAGACCGAGAACACCTCGCGCGAGGAACAAGACACTCCC
CCAGACGCCGCGGGTGATACGCCACCCGCACCAGACCTGACAGCAACTGC
TCCAGCATCCCATTCACAGAAAATAGCCGACGTGCAAGCTGCTCAAGCTC
AAGCAAATGACGCGTCTGACACAGAAGTGAAGGATGATGAAAACAGCGAT
AACGAGGCCACTCGCGAAGCGGTGATCAAAGTAGTGGGCACTGCCGATGA
CGACCCTGACATGCAAGATGTGGACATGAATGCGATGCCGCTCATCACGG
CAGAGTCTGATGATTCTTGGGGAGACTCCGATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:776060..777094-

>Gvermi8037.t1 ID=Gvermi8037.t1|Name=Gvermi8037.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1035bp|location=Sequence derived from alignment at ScGOVlb_24226:776060..777094- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTGAGCCTCCGTATTCAGACGAGGACGATGACGATGCGACAACAAC
TGTGCGCCATGCAGACGCTGTCGGCTTGGCAAACAACGGCCAAATAACCA
TTAATGAGGTGATTCGTAACATCAGAAAGCGCAAGAATCGCAAACAAATG
CCCTCCACGGCCCGTAGGAATGAGCAGCGTCGTCAGCGTCGCCGAACCGG
TGCTCCGCAACCGCAACCTTTGGAAGCGGGCCATCAAGTCCCGCAAGCTG
AACCTGCGTCCCCACCGCCCCCGGAAGAGGAGGAGCCGGACACAGCTGTC
GTTGCGCCGCAGCTCACCCTGGACGAGAACGGGAACATTGTTGTAGACAG
CTCTTCTTTGGTTGTCAGTGCCGGCACCGTCATCAACGCGGAGACTGAAG
GCGGGGATGTCACGACGTTTGAGAACTACGAGTACACAAAGCACATTACA
TCGGCAACGTTTTCGAAACGGCAGAATTCTACCAAATGGCTTGCGGAAGA
AACGGATCGCTTCTACGAGTGCTTGCGCAAGTACGGAACTGACTTTCTGC
TGATGGAGTCTGATTTTCCAACACGAAGTCGCCGCCAATTGAAACTGAAG
TTCAAGCGTGAGGAGAGGGAAAATCCGTGTCGAATCGACAATGCATTGCG
CGCCACTCCCCTTCCTTTACCTACTTCCCTGCCTAAACGCCCCGCTGCGC
CAGACGACCAACAGACCGAGAACACCTCGCGCGAGGAACAAGACACTCCC
CCAGACGCCGCGGGTGATACGCCACCCGCACCAGACCTGACAGCAACTGC
TCCAGCATCCCATTCACAGAAAATAGCCGACGTGCAAGCTGCTCAAGCTC
AAGCAAATGACGCGTCTGACACAGAAGTGAAGGATGATGAAAACAGCGAT
AACGAGGCCACTCGCGAAGCGGTGATCAAAGTAGTGGGCACTGCCGATGA
CGACCCTGACATGCAAGATGTGGACATGAATGCGATGCCGCTCATCACGG
CAGAGTCTGATGATTCTTGGGGAGACTCCGATTAA
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